RNA id: XM_026942648.2


Basic Information

Item Value
RNA id XM_026942648.2
length 3499
RNA type mRNA
GC content 0.48
exon number 14
gene id dpysl2b
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 22315294 ~ 22351716 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCTGTCCTTCTTGGCGCATCAGCGGAGAAAAGGAGAGCAGATATTCTTTCTTCGCCTTTGATTTGTCTTTTGCGCTTCGGCTCGATCGTCTCTGACTTCCGACCGCACAGCAGGGCCTGTTCTCCTCTTCCTGAAAAGCGCTCGAGCCTTTTTTTTGACGTCCATTTCAGCCATAACGGTTCATCCACAAGAGGGTGAAGATGTCCGGATATCAGGGCAAGAAGAACATCCCTCGCATCACCAGTGAGCGTTTGCTAATTAAAGGAGCGAAGATTGTGAACGATGACCAGTCTTTCTCCGCAGACATCTACATGGAGGATGGACTCATcaaGCAGATTGGGGAGAACCTGATCGTCCCAGGCGGGGTGAAGACCATCGACGCTCATGGCCGCATGGTGATGCCGGGCGGTATCGATGTCCACACTCGCTTTCAGATGCCTGACCGAGGCATGACGGCAGCTGATGACTTTTACCAGGGCACCCGGGCGGCAGTGGCAGGAGGAACCACCATGATCATCGACCATGTGATTCCGGAGCCCGGCACTGGCCTGATAGCGGCGTTTAATCAGTGGCGTCAGTGGGCCGACAGTAAGTCGTGCTGCGATTACTCGCTCCACGTCGATATCACTGAGTGGCACAAAGGCATCCAGGAGGACATGGAGACACTCGTCAAGGACCATGGTGTTAACTCTTTCCTGGTCTACCTGGCCTACAAGGATGTCTTCCAGCTGACCGACTCCCAGATCTACGAGGTGTTCAGCGTGATCCGAGACCTCGGCGCCATTGCACAGGTCCACGCTGAGAACGGAGACATCATCGCAGAGGAGCAGCGTAGAATCCTGGAGTTGGGAATCACCGGCCCGGAGGGACACGTGCTGAGCCGTCCAGAGGAGGTGGAGGCCGAGGCGGTGAACCGCTCCATCACAGTGGCCAATCAGACCAACTGTCCTCTTTACATCACCAAGGTGATGAGCAAGAGCGCCGCTGATGTCATCGCCCAGGCCAGGAAGAAAGGCACTGTGGTGTACGGGGAGCCAATCACGGCCAGTCTTGGCACAGACGGCTCGCACTATTGGAGCAAAAACTGGGCCAAAGCTGCAGCGTATGTGACCTCGCCGCCCCTGAGTCCGGATCCCACTACGCCCGACTATCTCAACTCCCTGCTGTCATGTGGCGACCTCCAAGTGACGGGCAGCGCCCACTGCACCTTCAACACCGCTCAGAGAGCCGTGGGGAAAGACGACTTCACCCTCATCCCTGAGGGAACCAACGGCACAGAGGAGAGGATGTCCATCATCTGGGACAAATGTGTGGTGTCTGGGAAGATGGATGAGAACCAGTTTGTGGCCGTGACCAGCACAAATGCAGCTAAGATCTTTAACCTGTACCCCCGTAAGGGCCGCATCGCTGTGGGATCAGACGCAGACCTGGTGCTGTGGGACCCCGACCTCACCAAGATCATCTCGGCCAAGAGCCACAATCTGGCGGTGGAGTACAACATCTTCGAGGGCATGGAAGTGCGTGGAGCTCCGCTGGTGGTCATTAGCCAGGGAAAGATCGTACTAGAGGACGGAACCCTGCACACCACTGAGGGCTCAGGACGCTACGTGACCCGAAAACCGTTCCCTGATTACGTCTACAAGAGGATAAAAGCCCGCAGCAGGCTTGCTGAGTTGAGGGGCGTTCCTCGTGGCCTGTACGACGGGCCGGTGTGTGAGGTCACCGTCACTCCCAAGGCTGTTACCCCTGCTTCTTCAGCCAAAACATCTCCGGCCAAGCAGCAAGGACAGCCTGTCAGGAACCTGCACCAGTCTGGATTCAGCCTCTCTGGTGCTCAGGTTGACGATAACGTTCCCCGTCGCAGCACTCAGCGCATCGTGGCACCCCCTGGTGGCAGGGCTAACATCACCAGCCTGGGTTAGAGCTCTCGGCTCCCTGCAGGAGATCAGGGGGTTGGGGGGTGTTTACAAGTGGAGGTGTTTCCGATACCAACGCTAGGTCCAGAGTCGAGACTCTCCACTCCCGAAACCCACTAACCCTCCTTTAATCTCATAGTCCCCTACTTTTACCCTGTTTTCCCTCCTTGCCCCAAACCCTAAACCCTCTCTTTGAGGAGAAATTTAGCGAAAAAGAAGTATTTGCCTCATGTGaagataaaaggaaaataattaacactcCATATTTGAGCACCTTGATTGTatgatttagcatttttatactgtatttttaccTATCGtgtgtcattttatattttttttctttatttaacaccttttttttattggagGGGTCCAGATAATAGGCTAAGCAGTTACTGTTTACcattataactttatttaacaagGTGAGTGGCATATAGAGTCCTAGCTTTGAGCACATCCAGTGGCATGAAGTTGTTTTTCTGTCATTGTAGggttttatataattttctgtAAGCACACAAAGGATTGTTAATATTCATTGCATAATTGGCTAAATGAAGTTATAACTTCGCATATAACGCATATAAACAATGGCTTTTTGACCAGAAATTGAAAACTTTCACTTATTCATTTGGCATAAATTAAAACCTTCAGGACATCTAATCAAACTATGAGCAAAGTTAAACTTGGAGTCCTCTCGATTTGGCCACATgatctgaataaataaaatccatatGAGGAAGCAGCTTTACTGCTTCAGAGTTAGTTCTGTGATTGGTAGTTGATGAATTGTGCACTGTTTAGTCATTTTAAAGGTGAGGTATTTGGAAATTGGCGCCCCGTGTGAGGACATTTCTGGCTTGTTGTGATTAAGGGTCAGGAACGCAAATCAGGAAGATGCTGATGGGAAATTAGGAAATTAGAGAGGAATGTCTGAGTTTTTAAAGTTTGCATTGTTGCAGTTGTTTTATATTCATGTAAAATGTGGATTTATTGGCATCGTAACTTCTGCCGTTCCTGTAAAGCGAGATTTCGGGGCCAGATCTGTCATCTTGGCTTATTATAATTGTGCTTCGCTTTGCAATGAAATTTAGCAGgttctgagtgtttttttattttaatttttttttattattattattttaaattttgccATTACATTCTGTGTTAATGAATATGATAATATGGATATGGCATTTTTACATcgatggaaatgaaaatgtaatatcttATGATTTAGATTAACCTAACACTTAGCTTTATGCCTGTGCCTAAAGTAACAGAAGTGTACTGATCATgttaagccttttttttcttttttctaattttattaaaCTTGCTGATGAAAAAAGAAGGCTATAGATGTAGAATAGCCGAAGTAAACCGATGCAAAGgtgccagatttttcttctcAACCCCTTTCCACAAGGGTCTTGTTCGAGATTCTGTGTCGCAGTGCCATTACAGGGGTGTCAATGTCAATGTTAGTGATGTAGTGCAATGGATGATCATTTACAATAAGGGACTTTCGCCACACTGAAATACACATCAACTGACCgggttttcaaaaaaaaa

Function

GO:

id name namespace
GO:0031103 axon regeneration biological_process
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323778 lncRNA upstream 282940 22037839 ~ 22038149 (+) True G273226
TU323780 lncRNA upstream 289563 22030600 ~ 22031526 (+) False LOC113544129
TU323810 lncRNA upstream 338898 21981979 ~ 21982191 (+) True G273258
TU323800 lncRNA upstream 358222 21962664 ~ 21962867 (+) True G273248
XR_003404485.2 lncRNA upstream 829013 21488112 ~ 21492076 (+) True LOC113544190
TU324041 lncRNA downstream 210388 22562104 ~ 22562325 (+) True G273473
TU324179 lncRNA downstream 449365 22801081 ~ 22840120 (+) True G273600
XR_004579839.1 lncRNA downstream 640826 22992542 ~ 22994797 (+) True LOC117599377
TU324282 lncRNA downstream 640840 22992556 ~ 22994510 (+) False LOC117599377
TU324287 lncRNA downstream 685693 23037409 ~ 23038616 (+) True G273683
XM_026942658.2 mRNA upstream 10536 22291081 ~ 22310553 (+) True bnip3lb
XM_034312836.1 mRNA upstream 32056 22272066 ~ 22289033 (+) True ppp2r2ab
XM_026942779.2 mRNA upstream 287092 21922551 ~ 22033997 (+) True LOC113544129
XM_026942559.2 mRNA upstream 842526 21476087 ~ 21478563 (+) False LOC113543995
XM_026942513.2 mRNA upstream 847971 21468412 ~ 21473118 (+) True LOC113543961
XM_026942855.2 mRNA downstream 17540 22369256 ~ 22374870 (+) True tmem230a
XM_026942708.2 mRNA downstream 28204 22379920 ~ 22426821 (+) True igsf9a
XM_034312727.1 mRNA downstream 28204 22379920 ~ 22426821 (+) False igsf9a
XM_026942709.2 mRNA downstream 28204 22379920 ~ 22426821 (+) False igsf9a
XM_026942744.2 mRNA downstream 270713 22622429 ~ 22665570 (+) False lrrtm4l1
TU323423 other upstream 842209 21476112 ~ 21478880 (+) True LOC113543995
TU322810 other upstream 1778135 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 1891946 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 1922142 20398280 ~ 20398947 (+) True G272367
trnae-cuc_36 other upstream 2472263 19848755 ~ 19848826 (+) True trnae-cuc_36
TU323909 other downstream 17558 22369274 ~ 22374875 (+) False tmem230a
XR_003404475.2 other downstream 270712 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 773651 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 913737 23265453 ~ 23274170 (+) False rc3h2
TU324491 other downstream 969855 23321571 ~ 23360503 (+) False LOC113543986

Expression Profile