RNA id: XM_026942654.2


Basic Information

Item Value
RNA id XM_026942654.2
length 6161
RNA type mRNA
GC content 0.47
exon number 13
gene id sh2d3ca
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23566714 ~ 23618521 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGTTGGAGACAGTCAGGGACAGTTGGAGACAGTTGGAGACAGTTGGAGACAGTCAGAGaaattgtaattgctgtaaTTGCTGTAGCTCTGAAGCCTTTCTGACTTCAGTACATTTGTCCGTCTTATATGAGAGCGAGGTTTGCGTTGGCTCCACCACAAACCCAGGGCTGCTCATATCTGTGCAGCTCAACACAGGAAGTGTTACACTGACACTTCTTACACTGCACCAGCTcttctgtccacacacacacacacacacacacacacacacacacacacacacacacacacaaggacataCGAGAAGGAAGCAGGTTATTCAGAACTATCTAGGAAAGAACATAAACATCTACATCCTGACAAAGGGACAACATGCTCAAGCACAAACTGAGTTTTAAGTGGTTTGGGAGTCTGGGTAACCTTTCCTTTCGTCGCAAGTCGGACGCAGCAAAGGAAGCTTCCCAAAAGGATGACTTGGCGCCCATCGATGATGATGAAATGCGCCCTCGCTGCCCGAGCTACGCCCGTTCCAGTGAAATGTACACCCACATGGGCACCATGCCTCGCcctaagaaaaagaaagataagagCATCAAGTCTAAAAGTCAGGATCAGAAGagtcttaaaaataaaaccaagacCAAGAGCAGCCCCTTGAGCCGGAGTCAGAGCATGAGATGTTCGGACTACGTGATCGAGTCGCCTCTCCTCAGCGCTCTCAATGGCAAAGCGCTCTCAAGCCTGCACGAGAACAAGGTAGACAACAAGCTCACACCACAACACCAGAAAGCTGAGTCCAAGGAAGAACCTGAAGCTGTGATCACTGAGCAGAGCCATAAAGATCCggataacacacactcaaaaccCGCAGAAGATCCAGATCCACCTCCGGATGCTCTCCAGGAGAAACCAGCACTGCCTAGGAAGAGTAGTCTCCCTGTAAAGATCTCTGTGGACCTGCAGGAGGAAAACACTTCCACCGTCAGTGAGCATCATcaacagaaagaagaagagaaaagaaaaacaagtccAGATCCTGAAAGtcaAAAGGGAACCACAGACAGTCAAGGAGAGTATGTAGAGttctCCAAGGAGAAGTACCTGTTGGAGTCTCCCCCAGAGAAGCTGAggaaggagctggaggaggaacTCAAACTCAGCAGCAGTGACCTGAGGAGCCACGGCTGGTACCATGGCCGCATCCCacgagagGTGTCGGAGACGCTGGCTCTGCGCAGCGGGGATTTCCTGGTGCGAGACTCTCTGGCCAACGCGGGCGATTACGTGATCACGTGTCGCTGGCAGCAGGAAGTGGTGCACTGCCGCATCAGTAAGGTTCTGGTGAAGAGCGGACAGACGAAGGTGCAGTTCCTCCTGGAGGACGAGACCTTCGACTCGCTGCCCACTCTGATCCGGCACCACGCTGGCACCGGCCGGCCCGTGTGCCCGCGCTCCGGCGCTCAGCTGCTGTGCCCCGTCAACCGCACGCTGCCCCTCAGGTACCTGGAGGCCACGTTTGCCCTGGCGAGCGGGAGATCGGGGTCACATTCACCATCCGCTCAGCGGGGGGCGCACATCAAGAGACGCAGCGTCACCATGACGGACGGCCTGACCACCGAGAAGATCATCCCACACAGCGATGGCGAGTCGAGTGAAGCGGCCGACTCTCGAGTATCAGACACCAAAGCGAAGACGGAGCAGGGAtgcagctgTCCATCCACAGTTCACCATAAAGACGCCATGAGGAACTGTGCGCTCAGTATGGACCAGATCCAGGAGATGCGCTGTCCCCTGTCCCCTGTAGGAGAAGCTCCTCTCTCACCTGCCTACACCTCCATTTCCCGTCACAGACATGGCTCAGGTGGGCGTGTCTTAGCCGTCATTCCACCTTCGCCGGTGATGCGACGATCCAGCGAGCCCCAcctctccccctcctcctccagtAACAATGTCCCGTGCTCGGACACGCCCCCCAACGCTCATGGCTACCCCTCAGATGGCTCAGAAGGAGGGGGCAGTTACTGCGAGCTGAGGCCGGGCCAGCCCCCAACGCCTCCATCTAAGAGCTACGTGGAGAGGCTGAGGGTGGAGGAGGGCCGAGCACCAGGCTCCGCCCCTAGCGATGGAggagaaagcttcaccatgcCTCTGGTGGAGAGCAGTTCGTGCTTCAGACCCGGGCGGTACCAATCAACCCTGCTTCCTGCAGAGAATAAGCCCCTGGAGATGGGGGTCCTGAAGAGGGTGAAGGAACTGCTGGCTGAGGTGGACCCTAAAACAGCAGCCAAACACATCACCAAGGCTGACTGCATGGTTGCTAGGATACTGGGCGTTACCAAGGAGATGCAAAGGATGATGGGAGTTAGTTCGGGGCTGGAGTTGCTGACTCTACCACATGGCCATCAGCTGAGACTGGACCTGCTCgagagGTTCTACACCATGTCCATAATGATGGCGGTGGACCTGCTGGGCTGTACGGGCAGTACGGAGGAACGAGCCGCTCTGCTCTATAAGACCATCCAGCTGGCAGCCGAGCTCAAGAGCACCATGGGAAATATGTTCGGATTCGCCGCCATCATGAGAGCGCTGGAACTTCCGCAGATCTCACGCTTGGACCAGACGTGGATGACGCTGAGGCAGAGACACACGGAGGGAGCCATCTTGTACGAGAAGAAGCTCAAACCCTTCATGAAGGGCTTAAATGAAGGCAAAGAGAGCTCTGTGCTGTCGAGTACGTCTTTCCCACACGTGGTGCCCGTGTTGTGTCTGTTGGAGAAGGGCGTGGCCGTGGGGGAGGGGCCAGAGCCGTGGGATGCTTCAGAATGTGGCGTGGACGTGGTCATGAGCCACCTAGAGGCAGCACGCAGCATTGCACACCACGGAGGCCTGTACCACACCAACGCCGAGAGCAAGCTTCACGacttccaggagagagaggaagtgtcGGAGATCTTCTGCACGGAATTCCAGATGAGGCTGCTCTGGGGAAGCCGAGGTTCTGAGGGGAGCCAGAGCGAACGCTACGAGAAGTTCGACAAAGTCCTCACGGCTCTTTCGCACAAGCTGGAGCCTCCTGTACGCCACAGCGAGCTATAGCACCACCCCCCACCCCCGTCTGGCACATTGGTACTGTCCGTCACCTCACTGTCTTTCCCACTTCTGGGAGAGACCATTATACTTctgggagagacagaggaaagcGAAAGAGGAAATGGAAAAGGAGCAAATCAAATCTAATCTGCGAATAAGGCACAAAAGGGGGCGGGGTTTATCCAGACGGGATGGCGCCTCGTATCGTACGGAACGCAGAACTACGGCAGGGGCGGAGTTTAAAATCCTGACACCAAAATCTCTTTTCTGACTCGGGAGATGAGGGATCGAGAAACATCTTTTTCGTGATCTCAGTCTGCATGATCATCACTCCATCGTCCCGGGACACTCAGAGAGACGTCACACTCAGTCACTCATCTAATGTCTTAATGTCTTAATGTATGTTGCCAAAACCACTTTCTTTACAAACatctcatttttatacatttttattattattattatttttattatgtttattttgattTCTGCGTACAAGGAGCAATATGTGGCAACCGACACACTCAGTACACAATGCTGTGGAGATGGTGGAGATCTCAGTGTAGTCTATGGGTGAGTGTGTAAGGTTGAGGATCTCATCCTGGACCTCACCCTGGTTCCTGCTGGAGATCTCACCACAAatcctgatttaaaaaagagacTCAAAATGGTTCCTGTTGGTGATCTGTTGAAGATCTCACCCTGGTTCCTGTTGGTGATCTGTTGAAGATCTCACCCTGGTTCCTGTTAAAGATTTGTTGAAGATCTCACTCTGGTTCCTGTTAAAGATTTATTGAAGATCTCACCTTGGTTCAGGTTAAAGAGTTGAGGATATCTGTTGAAGATCTCACCTTGGGTGCTTTGGAAAATTATAGCTTTCATCCTGGTTACTGTTGAAGATCTCACAACAAGTCAGGGGAAATGTTTTACAGTAGTTCCTGTTAAAGATCTCACACTGGTTCCTGTTAAATATCTGTTGAAGGTCTCATCCCAGCTCTGTTTAAGATCTCACCTATCAACCTAGGTCCTCTTAAAGATCTCACCCTAGTTTCTGTAGAAGACCTCATCTTAGTTCCAGTTGAAGTTCTCACCACAAATCCTGTTAAAAATCTGTTGAAAAAAGATCTCACCCTGGTTCCTCTAAAAGATCACATCAGGATCTCACCCTGGTTCCTGTTGAAGATTTGTtgaagatctctctctctctctctctctctctctctctctctctctctctctggttcctGTTAAAGAACTGTTGAACATCTCACCCTGATTCTTGTTAAAAATGTCACCACAAGTCCTAGTAAGGATCTCACCCTAGTTCCTGTTAAAGCTCCTCCCTAGATTCCTTTTAAAGATCTCCCTATGGAACTCGTTGAAGctcctctctgaagatctcCTGTGCAGACTGATACGCTGAGGTGGTGGACGTGCTGCATGTTGCTCCTTTACTCCTGTCACGGCTTTACCGAGTGCGAAGACTGGAGAGAAACTGTGAAGAGTGTAAAcctgttgtgtgtttgagtacgttttcattttctccattttacacatgtgtgtgtgtgtgtgtgtgagggaaagtgtgtgtgtgagggaaagtgtgtgtgtgtgtgtgtgtgtgtgaggtcttCAGGATAAAGTCCAGTGTAATAACTGGATGGTGTGAATTTTCTCTGTGTGATATTTTGgacattataataatttaatttatattcatcGATTGAGGCggttttatttttcctgctcCGTCTCAGCGCATGCTCCACTCTGGAACcctgaaataaaacataaagcaaaaaattagacattttttaaaaaaaataataacagtctttgtttatttttttgggtAGTTCAGTTTCAGaggacagtgagagaaagaacttctgttttctctccttattttttatttattcgcTTTAAAACCAGCGCTCGTCCCACTGTTCAGGTCAATCAGACTCAAAGTGATATACCTCTTACTGTAATTCTCTTTCCTGATATTATTACAGCTCACCTGTATTCGTATTTCCCCCTGATGATAATTACAGATGCCTTTATTTCTTGATTTCTTGATTTCTTGATTTCTCAGTAGTTCTGCGATCACCACCATTAACTGTCTGTTTAGCAAACTTTATTCCCAGGGGATTAAAAACACATGGTGGAGGCTCTATTTcaggtaatttttttataaaagcaatttGAGATGAGGATAGAGGAATGGAGGAGCTCTGTATGCAATTCCACTCCGAGTCAGAAGAGGGCTCTGTacagcaagcaaaaaaaaataaaaaataaaaaaaattttaagggaaaaaagagagcgCAAATGAGGCATGACAATTTGCACCAACATGGATTAAATATCATGAagttttcattaattaatcagttaGTCATCCAAGGTTgaaattttaaatctaattcACCTGACATAAATCTTGAACAATGAAATTCTGCACAGATGCTGCAGTAGAAACtagagtataaataaataaataaacaaacaaacaaacaaataaataaataaataaaattacaacaatgtttaaaaaaaaaacagaaaataaccAATAACATTAGAAAGTTGTCATGGACagatttcatattttacataatcCTACTTTGGAgagtatagttttttttattattattataattgaattttaatattattttaaaaatgtatttaattttcacTTCTACATTTCAATACTACAAGCAGATTTGCATCATTTATGGAGCAGAACTCTCAGTCAGGATTCGGTTTAACGGAATCAAATGCAGGTGTGAATTGGAGATACATACATGTGAATTAACTCCAGGTGAAACTGAGTCCACGTTGGTGCAAACTCACACTCAGAGgcatttttacagatttgtttGGATTGCACTGAGTGTTTTGTGACTGATATGAGGTTTATTTCATGGTGTAAATAGAGAATGAACTCTGATAGACAACATGTTTGAAGCTGATTTTGGTTGCATCTTCTTTCTTATGTGCTGTACATATGAGTATGTGATATGTTTTTCAATCTTTTTTCcaggaaataaaatacagtaagcTTGC

Function

GO: NA

KEGG:

id description
K23690 SH2D3C; SH2 domain-containing protein 3C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324528 lncRNA upstream 168183 23396808 ~ 23398531 (+) True G273900
TU324506 lncRNA upstream 233165 23286000 ~ 23333549 (+) True G273880
TU324488 lncRNA upstream 286925 23261046 ~ 23279789 (+) False G273865
TU324489 lncRNA upstream 286925 23270148 ~ 23279789 (+) True G273865
TU324487 lncRNA upstream 288864 23274822 ~ 23277850 (+) False G273865
TU324813 lncRNA downstream 57122 23675643 ~ 23677227 (+) True G274161
TU324841 lncRNA downstream 233476 23851997 ~ 23852218 (+) True G274186
TU324847 lncRNA downstream 241303 23859824 ~ 23860703 (+) True G274192
TU324848 lncRNA downstream 250333 23868854 ~ 23869197 (+) True G274193
TU324880 lncRNA downstream 319512 23938033 ~ 23940111 (+) False cdc37l1
XM_034312519.1 mRNA upstream 180607 23281561 ~ 23386107 (+) True LOC113543986
XM_026942502.2 mRNA upstream 220906 23342796 ~ 23345808 (+) True LOC113543956
XM_034312934.1 mRNA upstream 292061 23244560 ~ 23274653 (+) True rc3h2
XM_034312933.1 mRNA upstream 292061 23247556 ~ 23274653 (+) False rc3h2
XM_034312932.1 mRNA upstream 292061 23250984 ~ 23274653 (+) False rc3h2
XM_034312337.1 mRNA downstream 5616 23624137 ~ 23640347 (+) True urm1
XM_026942519.2 mRNA downstream 5616 23624137 ~ 23640347 (+) False urm1
XM_026942864.2 mRNA downstream 44098 23662619 ~ 23676630 (+) True cercam
XM_026942634.2 mRNA downstream 65029 23683550 ~ 23721518 (+) True sardh
XM_026942637.2 mRNA downstream 136596 23755117 ~ 23777033 (+) True fam163ba
TU324491 other upstream 206211 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 292544 23265453 ~ 23274170 (+) False rc3h2
TU324289 other upstream 437394 23125367 ~ 23129320 (+) False lhx6
XR_003404475.2 other upstream 901144 22622428 ~ 22665570 (+) True lrrtm4l1
TU323909 other upstream 1191839 22369274 ~ 22374875 (+) False tmem230a
TU324879 other downstream 484568 24103089 ~ 24104595 (+) False hsdl2
TU325154 other downstream 608860 24227381 ~ 24228678 (+) False LOC117599389
TU325389 other downstream 911457 24529978 ~ 24587552 (+) False erbin

Expression Profile