RNA id: XM_026942657.2


Basic Information

Item Value
RNA id XM_026942657.2
length 2343
RNA type mRNA
GC content 0.59
exon number 11
gene id sh2d3ca
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23566714 ~ 23618521 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccccacctCCTCCTTTCATCCGAGAGCGATGAGGTAATCCCTGCCAGCTCTCTGAAGCATAGACAGTGCGGCTCTGTGCTCACACACTCTTGTACGTATCCTgagtgtgtgcgtctgtgtgtgcatgtgtgtgtgtgtgtgtgtgcatgtgtgtgtgagtgtgagcgaCGAGGGGCATGACCCGGACCTTCTAGTGGACCCTAAGACGAAAAAGAGAACTGGATAGAGGGAGacaggaggaggaaaagaggaagcatGACGGAGAGATGCAGTCTGTGGAGCGCCCTGTCTGCAGCCGCCTGCTGCTTCTACAGGGGATCGTTCATGCagttctCCAAGGAGAAGTACCTGTTGGAGTCTCCCCCAGAGAAGCTGAggaaggagctggaggaggaacTCAAACTCAGCAGCAGTGACCTGAGGAGCCACGGCTGGTACCATGGCCGCATCCCacgagagGTGTCGGAGACGCTGGCTCTGCGCAGCGGGGATTTCCTGGTGCGAGACTCTCTGGCCAACGCGGGCGATTACGTGATCACGTGTCGCTGGCAGCAGGAAGTGGTGCACTGCCGCATCAGTAAGGTTCTGGTGAAGAGCGGACAGACGAAGGTGCAGTTCCTCCTGGAGGACGAGACCTTCGACTCGCTGCCCACTCTGATCCGGCACCACGCTGGCACCGGCCGGCCCGTGTGCCCGCGCTCCGGCGCTCAGCTGCTGTGCCCCGTCAACCGCACGCTGCCCCTCAGGTACCTGGAGGCCACGTTTGCCCTGGCGAGCGGGAGATCGGGGTCACATTCACCATCCGCTCAGCGGGGGGCGCACATCAAGAGACGCAGCGTCACCATGACGGACGGCCTGACCACCGAGAAGATCATCCCACACAGCGATGGCGAGTCGAGTGAAGCGGCCGACTCTCGAGTATCAGACACCAAAGCGAAGACGGAGCAGGGAtgcagctgTCCATCCACAGTTCACCATAAAGACGCCATGAGGAACTGTGCGCTCAGTATGGACCAGATCCAGGAGATGCGCTGTCCCCTGTCCCCTGTAGGAGAAGCTCCTCTCTCACCTGCCTACACCTCCATTTCCCGTCACAGACATGGCTCAGGTGGGCGTGTCTTAGCCGTCATTCCACCTTCGCCGGTGATGCGACGATCCAGCGAGCCCCAcctctccccctcctcctccagtAACAATGTCCCGTGCTCGGACACGCCCCCCAACGCTCATGGCTACCCCTCAGATGGCTCAGAAGGAGGGGGCAGTTACTGCGAGCTGAGGCCGGGCCAGCCCCCAACGCCTCCATCTAAGAGCTACGTGGAGAGGCTGAGGGTGGAGGAGGGCCGAGCACCAGGCTCCGCCCCTAGCGATGGAggagaaagcttcaccatgcCTCTGGTGGAGAGCAGTTCGTGCTTCAGACCCGGGCGGTACCAATCAACCCTGCTTCCTGCAGAGAATAAGCCCCTGGAGATGGGGGTCCTGAAGAGGGTGAAGGAACTGCTGGCTGAGGTGGACCCTAAAACAGCAGCCAAACACATCACCAAGGCTGACTGCATGGTTGCTAGGATACTGGGCGTTACCAAGGAGATGCAAAGGATGATGGGAGTTAGTTCGGGGCTGGAGTTGCTGACTCTACCACATGGCCATCAGCTGAGACTGGACCTGCTCgagagGTTCTACACCATGTCCATAATGATGGCGGTGGACCTGCTGGGCTGTACGGGCAGTACGGAGGAACGAGCCGCTCTGCTCTATAAGACCATCCAGCTGGCAGCCGAGCTCAAGAGCACCATGGGAAATATGTTCGGATTCGCCGCCATCATGAGAGCGCTGGAACTTCCGCAGATCTCACGCTTGGACCAGACGTGGATGACGCTGAGGCAGAGACACACGGAGGGAGCCATCTTGTACGAGAAGAAGCTCAAACCCTTCATGAAGGGCTTAAATGAAGGCAAAGAGAGCTCTGTGCTGTCGAGTACGTCTTTCCCACACGTGGTGCCCGTGTTGTGTCTGTTGGAGAAGGGCGTGGCCGTGGGGGAGGGGCCAGAGCCGTGGGATGCTTCAGAATGTGGCGTGGACGTGGTCATGAGCCACCTAGAGGCAGCACGCAGCATTGCACACCACGGAGGCCTGTACCACACCAACGCCGAGAGCAAGCTTCACGacttccaggagagagaggaagtgtcGGAGATCTTCTGCACGGAATTCCAGATGAGGCTGCTCTGGGGAAGCCGAGGTTCTGAGGGGAGCCAGAGCGAACGCTACGAGAAGTTCGACAAAGTCCTCACGGCTCTTTCGCACAAGCTGGAGCCTCCTGTACGCCACAGCGAGCTATAG

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324528 lncRNA upstream 178994 23396808 ~ 23398531 (+) True G273900
TU324506 lncRNA upstream 243976 23286000 ~ 23333549 (+) True G273880
TU324488 lncRNA upstream 297736 23261046 ~ 23279789 (+) False G273865
TU324813 lncRNA downstream 60186 23675643 ~ 23677227 (+) True G274161
TU324841 lncRNA downstream 236540 23851997 ~ 23852218 (+) True G274186
TU324847 lncRNA downstream 244367 23859824 ~ 23860703 (+) True G274192
TU324848 lncRNA downstream 253397 23868854 ~ 23869197 (+) True G274193
TU324880 lncRNA downstream 322576 23938033 ~ 23940111 (+) False cdc37l1
XM_034312519.1 mRNA upstream 191418 23281561 ~ 23386107 (+) True LOC113543986
XM_026942502.2 mRNA upstream 231717 23342796 ~ 23345808 (+) True LOC113543956
XM_034312934.1 mRNA upstream 302872 23244560 ~ 23274653 (+) True rc3h2
XM_034312933.1 mRNA upstream 302872 23247556 ~ 23274653 (+) False rc3h2
XM_034312932.1 mRNA upstream 302872 23250984 ~ 23274653 (+) False rc3h2
XM_034312337.1 mRNA downstream 8680 23624137 ~ 23640347 (+) True urm1
XM_026942519.2 mRNA downstream 8680 23624137 ~ 23640347 (+) False urm1
XM_026942864.2 mRNA downstream 47162 23662619 ~ 23676630 (+) True cercam
XM_026942634.2 mRNA downstream 68093 23683550 ~ 23721518 (+) True sardh
XM_026942637.2 mRNA downstream 139660 23755117 ~ 23777033 (+) True fam163ba
TU324491 other upstream 217022 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 303355 23265453 ~ 23274170 (+) False rc3h2
TU324289 other upstream 448205 23125367 ~ 23129320 (+) False lhx6
XR_003404475.2 other upstream 911955 22622428 ~ 22665570 (+) True lrrtm4l1
TU323909 other upstream 1202650 22369274 ~ 22374875 (+) False tmem230a
TU324879 other downstream 487632 24103089 ~ 24104595 (+) False hsdl2
TU325154 other downstream 611924 24227381 ~ 24228678 (+) False LOC117599389
TU325389 other downstream 914521 24529978 ~ 24587552 (+) False erbin

Expression Profile