RNA id: XM_026942659.2


Basic Information

Item Value
RNA id XM_026942659.2
length 7524
RNA type mRNA
GC content 0.43
exon number 30
gene id itga1
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20050618 ~ 20110301 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatacacacacgcgcgcgcgcgcacacagaAATCCTGCTGCTGCGCTCTGGCACGCTCTCGCGCTGTTTAACGGGAAACCGCTTTTAGGCGCGCGAGACGATACGAGAAGCACGAGACAGCTCGAAATGCGCTCTGGAGAGCAATGCTTAAGGCTCGCGGCACTGCTCGTGCTGCCGTCGTGTTTGTTGTCCTTTAACGTGGACGAGAAGAACGGGATGTCGTTCAGCGGGCCGATAGAAGACATGTTCGGTTACACCGTGCAGCAGTTCAACAACAGCGAGGGCAAATGGGTTCTGATTGGTTCTCCTCTGAAGGGACAGCCAGCCCAGCGGACCGGAGACGTCTACAAATGCCCTGTGGGTCAAGGCAGTTCTTCCAGCTGTATAAAATTAGACCTGCCTGCGCACACAACAATCCCAAATATACACGAAGTCAAAGAGAATATGACCATGGGCACGACGCTGGTGGCCAATCCAGATGGGAACGGATTTCTGGCGTGCGGTCCTCAGTACGGCTACATGTGTGGAAATCAGCAGTACATCACGGGCATCTGCTCCAACGTCAGCTCCTCCTTCCAGGTGCTCAACTCTATCGCCCCGACCATCcaagactgtaAGCAGGACATGGACATCGTCATCGTGCTGGATGGATCCAACAGCATTTTCCCTTGGAAACACATCACAGAATTTCTGGTCAAGTTTCTCAAAAAGATCGAAATCCCTCCAGCCAGGGTGGGCATTGTGTCATACGGAGATGACGTCGGCCATGTTTTTAACCTCAGCCAGTTCTCTAACACAGAAGACCTGGTTAAAAACGCAGCTGGGATCAAACAGAGACAGGGCTTAAAAACCATGACAGCGCTGGGAATCGATACAGCGAGGAAAGAGGCGTTCACTGTGGAGCGAGGAGCCAGACCAGGGGTCAAGAAAGTCATGGTGATTGTTACAGATGGAGAGTCACATGATGACTACAGACTGAAAGACGTCGTCAAAGACTGTGAGGAGGATGGGATCGAGAGGTTCGCCATCGCTGTTCTTGGTGATTATAACCgacaaaataaaagcaaagagGAAGTGAATAAATTCATTGAACAAATCAAGTCCATTGCGAGCAATAAAACAGACGATCATTTCTTCAACGTGGAAGACGAGCGGGCACTGATCACCATCGTCGATGCTCTAGGGAGCAAAATCTTTGCATTAGAAGCTACGTCTGGGAATCACACATCGTCTTTTGAAATGGAGATGTCCCAGTCAGGCTTCAGCGCTCACACGTCTAAAGCAGGTGTGATGCTGGGCGCAGTGGGAGCGTACGATTGGAACGGCACCGTCGTCATGCAGTCGGGTAATCAGTTTGTCGTGCCCAAAAACAACATCTTTCACAACCCTCTAGTGGAGAGGTACCAAGGCATGGCCGGATACGTGGGTTACGATGTGCAGTCGGCATACACACCCTCTGGAGTTCTCTACATCACCGGAGCTCCCAGATACAACCACACTGGCCGAGTTATTGTGTACCGCTTCAACGGGGAGAAGGTCACGGTCATGCAGAACCTCGAAGGAGAACAGatcGGCTCGTACTTTGGCAGCGTCCTCCAAACGCTGGACGTGGACGGAGACTCATACACAGACCTCCTGCTGGTGGGAGCTCCCATGTTCATGGGGCCTGAGAGAGACGAGCAGGGACAGGTCTACGTCTACAAGCTCAACACgGAGGGCATGTTTGAACACGAGATGACCCTGCGGCCGGTAAACCAGACATGCTGCACGGCGCACTCACACGCTTCCTGTACGAGTGTGAACAAGAACGAGCCATGCGGCGCTCGCTTCGGTACGTCCATCGCCGCTGTTCCTGACCTCAACCTGGATGGCTTTAACGACGTGGTGATCGGGTCGCCGCTGGAGAATGACCACCGGGGGGCAGTGTACATCTACCACGGCACTGAGCACACGATACGAGAAAAATATGTCCAGcgcaTAGCTGCTGGAGGTGATGGAGAGAAGATGAAGTTCTTCGGTCAGTCCATTCACGGAATCATGGACTTAAATGATGACGGGATTATAGATGTCACTATTGGAGGTATCGGAGGGGCTGCGCTGTActgGTCTCGGGATGTTGCCACTCTCCACGCCGAGATGAGCTTCGATCCCAACAAAATCAACGTGCAGCAGTCGACGTGTCAAATCCATGGCaagaacacagtgtgtgtgaagaccAAAGTGTGTTTCAGATACAAGGTCAAGTCCGAAAAAGAGACGAACCCAAAGGACCCAAAGACATtgatccACTACACTCTGACTCTTGATTCTCTGCGTGCCCTTGCGAGAGGAAGATTTAATGGTACAGATGAGAGAAAAATCCAGAAGAACGTCATCATCAGAGACTCTCTGTGCAATGAACTCTCCTTCTACATGTCGGACAAATTGGACTTTAGGGATCCTCTGATGGTGTCTCTGGACTTTGGGTTAGTGGATGTAGACAGGGGCCCAGTGCTGGATGGAACGTTACCAACATCACTCAATAAAACGcttGCTTTAGTAGACTGTGGAAATGATGAGAAGTGCATCGCTGATTTACACCTCCAAGCTACACCGAATGTCAGCAGCCTTGTCATTAAGGCCTACCATGAGAAGTTCCATGTCAGCATTAACATCATGAATAGTGGAGATAATGCGTACAACACCAAGGTCACACTCAGCACCACGGAAAACATCAACTACGTCAAAGTGGAGccTAAAGATAAAGACTGTGAGTTGAATCATACCAAGGCTGCGTGTGCAGTAGGATACCCTTTCCTCAAATCCAATGTATCGGAAGTCTTCAAGATTCTCTTTGAGGTCAATCCATCTCACATTCGCAAAGACATCATCATCAACGTCACTGCGACCACTGATAGCGAAGAGCGCAAGTCGGTGCTTCAGGACAACTTTGTACAGATCTCCATCCCGGTGATATATGAAGCCAGTCTGACCTTCACTGCgaaACTGAGCATGAAGGAGAATCATATAACCCTGAAGGAGGGAGAAACAGCACCGACTGTCATCAACGACACCAGCATGATTGGAGAAGAGATGAACATCAGTTATACGAttgagagagatgcagagacaCAGAGTCCTCCTCTCAGTCTGGCCATCACGTTTCCATACATGACACAGGCAAAGAACATCCTGCTCTATCTGACTCGCCTCACTTCCTCAGCCAATATCAAATGTAATGCGCTTGTTAACCCTGAGAACATCAGCCAGACAAAACAGTTCACCCATATAGCTAAAGCTGAGACACTCAGTGACTATCTGTTGagctgtaaaGAGAACGCGAACCCCTGCAGGTCGTTCAGCTGTGATATTCCTCCTGCCAGATTCAACCAGGTCAACGTCACCTTCAGAGTCTGGAAGCAGACGTTCATCCACGGCGAGTTTTCCAGTCTCTTCTTAACAGTTCACGCTAAATTGGAGAATAAGGACAAGGCTTTCTTCCAGTTAAGCAAAAGCGACGAAAACAGAGAGGTGCGTGTGCAGATCTCCAAAGAGTCCCGAGGTGGAATTCCTTTGTGGATCATCATCCTCAGTATCCTCATAGGACTACTAATACTGGCACTGGTTATATTTTGTCTTTGGAAGTTTGGCTTCTTTAAGAGAAAATCAGTGGAAGACATGAAGGAGGATATGAGAGACAGTTAAAGGCTCCAGTCTTCAGGTCTGCAGCCTTCAAAAGCCCTCAGGTcaaactcacactcacagaCCCACAGAGATGCTACACATTACAGTTTAACAGAATGGACCAGAAGCATCACCAACATCCACCTGAAGATCTTGATACGGAAGATGTACTCTAGATTGTTTGGATTTTCAGGATGGCTTCTCAACCTTGAAAGTCAGCAGTTGGACTTTGGGTTGTCGTCTTATATATGCATCATGCTTTATGCCTTTCAAAACCCAGCACAAGAGCGCCACATTTTAACATTGGAGTAAGCTAGTGTGAGTTATCACTGAaaaatatgccttttttttccccaaaaaacaGCAGTTGAGCCAATCgtcatatgaatctggaatgattgacaatCGTGTAGGTGTTTTAAACTGTACGATATTTACCGATGCCCCCtgaaagccccgcccccttctccCTATCATATGCTCCCTCGCCATCTGTCAAagtaaatggagaatatttgGAGTTCATTACCgggaaataaaatctatcaatttATATTACACTTGTATGTacagctaacattagacaagaaTATAGTGAAAATCCGttagctatatttattaaagatgccACTGAAATCTTTTGgccagaagagaaaaaaggctgaaaatCTACAAATAATCATCAGACATATTCAAACAGCACACTCAAGCCCACTGCagtagaaactggagtgtgcGTATATACAGAGTTTTATGGTAACCACCAAGCCTTTTTTTGCCCCATAAGCATAGTGATTACCGTAAAACCCTCATGCATATGTGTACTCCAATTTCTACAAGACaagaaatgtatatattattccTCTTCAGGGTTAGCAGGTCTGCAAAGCCCATTTGGTGCTCTATGACCAACTTAACAGAAATTGTGATATAGTAGTGAATTTCAGCTAAATGGAAATCCAAATCCAAACCAAAGCAGCTGTTTTATATAACTATGTATAAACCCTCAAAACAGATCACATCAAATCTTCTCCAGTGCTCAGAGGCCATGTTGTCTAATCTAACCATGCCATTGGATATCTTTATACcaatgaaaaatgacaaaaagaatGGAAAATCCCACCAAATCTGAAGATTTCATCATATCCTCTGCATCACATTTCACACCGGAGCTTCTTTAATGCCCTTCAGCCATGCCCTCATGTCTCAGCTACACCAATGGAGGCCTTTACATGAATAaacgacattttttttttaatcgtaaaatatatatatatatatcatttgtGCTCAATATATAGCTAGTGTTGTTTCTTTAAGGCTAACTGACTGTTTTGGCACATTCCTCTGCTTTTATGCAGCATTTGACACTGATATTCATGACATTCTTCAAGTTTTTCCTCACCGAAGTGCTGGGGGATCTGACTGattgtactgtaaatgtatataagagTAAAATTGTATATAGAGCGATGTTTGCAATAATACTTGTAATTTAATGACTATCAGAATGATCAATAACCCCTTGTTCCTATAGTAATGGAAAACACACTCTACTGCAAAGTCCCTCGGGGGGGTTCAGATTACTTAGAATTCAAGTTAGTTTTTAGTAGCAACTGAAAATCTGTAAATTTCTTAAAAttggaaacatttaatttaattgtaagTCTGcccctatttttttctttttaattagtGCTTTTTTTATTACGTTACATTCCGCTGATGAGTTTGCTCACGAAACAACCTACTATTAACAAATGTTATGCAGTGTACATGTTTtccagttgttgttgtttttaaaaaaatttctgctTTATAATATTGCATAGTTTTTCCATCATTGTTTCAGCTCTTGTCTTGGGCTAATCATGTGCCGATAACCAGTTGTACAATTTATTGCGTTATTCAACACAAACATTGGCACTTCACTATTCCTTCGTTACGTTGATGTGAAGGCTGTATGTTTTGATTAACAGCCATGTTTGGGTCAGAATTCATTTCCATGAATAAAATCAGCTAGCTGAGGTAGCACCACCTGAAGGTAACCCACCGCAATAAAGGTTCctttaatgttaaaatgctaCCCAGTAATATACGATGATCAAAGCATGAAGAGAAAcaaatcattatcattatatgACAAGACCAAAATTGCGCATTTAGATCTCGAACACAACCACAGACTTAAGTACGATTCAGAAGTCAGGAAAGAGTTTCGTATGTGAGGTGGAGTTTGCCTGAAACGGAGGCATATATTTATGCTTTTGGACTGTAACAACACTCAAagccaatattaaatgtataaatttgacgcagtggtgcagcaggtagcattgctgtctcACTGTTCCAGGGTTAccatttgatcctgagctcaggttaccaTGTGTGTGAAGTTTCATATGTTCCCTGTGTGTtagtatgggtttcctccaaattctctggtttcctttcaCTGTCCAAAAACTTGCAgataggtggactggctacgctaaattgccctaggtgtgagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatggtgtcctATGATGGCCTGGCTTCCCATCTCTCAGTGTTACCAGGCTTGTTACCTCTGTGACCCTTACACAACccaaataataggatgtgcagGATCAGGTGCTATTCAGCAACTATTCATACACCAATATATTAGTGAtgtactagactcctattagatagAGTTTGATCCTTGTCATTTCCTTATGTGTTACAATtcaattagaaaagaaaaaaaacagtttccttcttcagtccgtattttctatccctgatttttttctgtcttaaagGCATGTGTtcgtgtttaaaggtggtggacTAGATACTATTAAAAATCCTGTCTCTGATGCTTCTACTGAAGAAAATCTGGCAATCTTAGAggcataaaatatatacaggTATTTTGGATAATGAAATCAAACTTGAATGCATATGAAATGCATAACTCAGCTCTGAATACATGTAACCTTGCctgtgtaaatgatgtaaattttggatgttttataaataacagGACACCACATGACTGCGTCAGCTCGTCAGCTCAACTGAATGCTAGCAATGAATTAACTGCTGAATTAATTAACTTCATTAATTGTATATGACTTATGCATTGCTTAAAGTGCCAATGTTTTCTTATAACAATAggttttttgcatttctttcaaCCAAGTTACTGTTTGTATGACATCCTTCTTCTGCTCCATGTCACCAAATGGTACGGGAATTACAGCTGCCTATAAATCTGACATAATTAATCCGAAaatcagttacatttaattgaGGTTTCCAACTGTGTGTCCAGACTAGTGTGTTGTACAATCCACTGTTGTGATTCAGGATTTTTAAAACATCCTCTCTGAGAACTGAAAATGCATTGTAAAAAGGCATTTTCTAATGtctaaaatgtattaatgatTCAATTATTCATGTCTAGATTGTGAAAAACTGtttctgttattgtgtttttttaacatttctgattcagccttttatttctttcttatttttgtccactttctttcttaaaaaacacacatgctatGTTGAATTTTGTTTGATTATATTATACATGAGCTCATCCCCATTGGCATCAGCACTCCACTTCTGCAAGCACATGTATTAAAGAAAATACAGGCACGTTTAgggtgtgagaaagagagatttttGTTTAAAGTCACTGCTGTGAACCAAGTAATGCACTGGTTTTgtcatactgtgtatatattccTCTTGTTAGCACGGATTTGAAAAGGATTGCACATTATGTCTGGAACAATATGCACATGAAATAAATacgtgtttgtttgtttttttaatgacctca

Function

GO: NA

KEGG:

id description
K06480 ITGA1, CD49a; integrin alpha 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322611 lncRNA upstream 42421 19966127 ~ 20008197 (+) True G272246
TU322558 lncRNA upstream 107119 19941046 ~ 19943499 (+) False gfra2b
TU322559 lncRNA upstream 127440 19923035 ~ 19923178 (+) False gfra2b
XR_004579783.1 lncRNA upstream 225386 19817178 ~ 19825232 (+) True LOC113544143
TU322615 lncRNA downstream 113176 20223477 ~ 20226693 (+) True G272249
TU322678 lncRNA downstream 129593 20239894 ~ 20240346 (+) True G272305
TU322720 lncRNA downstream 199290 20309591 ~ 20309876 (+) True G272347
TU322742 lncRNA downstream 299422 20409723 ~ 20465046 (+) False G272361
TU322744 lncRNA downstream 299422 20409723 ~ 20456458 (+) True G272361
XM_026942564.2 mRNA upstream 26904 20018366 ~ 20023714 (+) True LOC113543999
XM_026942865.2 mRNA upstream 107113 19853554 ~ 19943505 (+) True gfra2b
XM_034312380.1 mRNA upstream 220350 19826108 ~ 19830268 (+) True LOC117599326
XM_034312420.1 mRNA upstream 244823 19792704 ~ 19805795 (+) True LOC117595711
XM_026942526.2 mRNA upstream 263787 19783324 ~ 19786831 (+) False LOC113543969
XM_026942459.2 mRNA downstream 7224 20117525 ~ 20123709 (+) True sub1a
XM_026942461.2 mRNA downstream 8168 20118469 ~ 20123709 (+) False sub1a
XM_034312904.1 mRNA downstream 15234 20125535 ~ 20154803 (+) True pstpip2
XM_034312905.1 mRNA downstream 15234 20125535 ~ 20154803 (+) False pstpip2
XM_026942552.2 mRNA downstream 72353 20182654 ~ 20214754 (+) True mtrex
trnae-cuc_36 other upstream 201792 19848755 ~ 19848826 (+) True trnae-cuc_36
XR_004579782.1 other upstream 220350 19825962 ~ 19830268 (+) False LOC117599326
TU322530 other upstream 244823 19793912 ~ 19805795 (+) False G272180
TU322750 other downstream 287979 20398280 ~ 20398947 (+) True G272367
TU322768 other downstream 313098 20423399 ~ 20429143 (+) True G272374
TU322810 other downstream 430024 20540325 ~ 20542954 (+) True G272408
TU323423 other downstream 1365811 21476112 ~ 21478880 (+) True LOC113543995
TU323909 other downstream 2258973 22369274 ~ 22374875 (+) False tmem230a

Expression Profile