RNA id: XM_026942672.2


Basic Information

Item Value
RNA id XM_026942672.2
length 2554
RNA type mRNA
GC content 0.47
exon number 14
gene id tacc1
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19137237 ~ 19168592 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAGAGCTGAACATGAGCAagccgagttcagcaagtgccCTACAGCATTGTGTCTGATcctcacactttcacacacactcccacagactctgccacacactcacacacacacacacacattcacatatacGCTTCATCATGGGTGGCTCTTTATCCCAAAACAAGAAGAGCAGCGAGGTGACGAGTAAGAAGAGTGTCAGTCCctcagATTCAGAGGGTCAGTTCGAGACACCTGAGACGGAGTCACCTGTCCATCAACCACTTGCTCCACccacaacacacatcacagAGGAGGACGTTGTGTCCATCACCGTAACATCAGAGCTGAACCTTGCAAACCAGGACAACGGTCCAAAACCAGAGACCAATGATTTGGACTGTAACAGCCTTCTTCCGGAAATTCCGAAGATGAAATCTCCTCTCATTCCTGAATCCACAGAGGTGGAAACAGTCACACCCAGTCCTGTGAATGTGGACGATATTCCTCTTCCCAAAAAAACGTACACCTTCGAACCGGAAAAAGAACTTCAGGACGAGGACGATGCTGGATCTCAGAAACAAGGAAGTAAAACGGAAAATGATATAAAAGAGAAACCTACAGAAACAGAACCGGGATGTGATGTGGACGATGTTCCTCTACCTGAAAATTCATACAGTTTAGAACAGACGTCTGAATTCCAAGACAACAATAGAGAATGCAAAAAATCTCCGTCTCAGAAACGAGGAAAAAAACCTGGAACCAAACCCACATCTAAAAAACAGAAGCCCAAAGCGATGGTGGTAGAAAacgacacacacacttctctaaATGTGGACGAAATTCCTCTCCCCAAAACATCCTACAATTTTGACCCAAGCCAATGGGACGACCCCAATTTCGACCCGTTTGGAGGGAAAAACAAAGTCCACAACTCTCCGACACTCCCACAAGCATCGTACGATTTCAATCCGGATAACTTCGACGACTCACAGGATGCCTTTAAGCCGTCTAACAAAATCACCGGAAGCAGCGACACAGAGAGAACCAACGATGAGAAAACGAAGGAGGATGAGAACAAAGGACACCCTCTGGTGGATGAGAGGAATGTGAGACAGTCGCCCAAGAAGAGCAAAGACAAGATCATCACGACCAATGAACAAGCGCGCTTTCTCTGTATGCTGCTGAATACGTGCAAAGTCAAGAAGTATGAGAACACGTCGTTAGCGCTGGACGTCTGCAAGCAGgttGAGGAAGAACAGGAGGAGCCGGTACGTCACGCCACTGATGAGGAGAAACTCGCATCTACATGCACGATGCAGAAACACGATAAAACATCGAAGACGTTAAAATTGGAAGACGACCTGGAGGTAGAGAAAAAAGATCATTTTCCTGAGAAGGAGATCTGCACACCTAGTGAGAGCTTAGAGAAGACCAGCCCCAACCTTGACTCCATCGCGCTCAGTGAGATGGACAAAGCCGCTGTTCTGACTCTCATCAGAGAGGagATAATCACGAAAGAGATTGAGGCAAACGAGtggaaaagaaaatatgagGAGAGCAGAATGGAGGTGTTGGAGATGAGGAAAATAGTTGCCGAGTATGAGAAGACAGTAGCACAGATGATCGAAGATGAGCAGAGGAAGAACATGGGCTCTCAGAAGAGCGTCCAACAGCTAATAACGGAGCGGGATCAGGCTCTGTCCGATCTCAACTCAGTCGAGCGCTCACTCTCGGACCTGTTCCGACGCTACGAGAACATGAAGACCGTGCTGGAGGGATTCAAAAAGAATGAGGAGGTGCTGAAGAAGTGCGCTCAAGAATATTTAGCACGCGTCAAACAGGAGGAGCAGCGTTATAACACACTCAAAATCCACGCTGAGGAGAAACTCGACAAGGCGAATGAAGAGATCGCTCAGGTGCGTGCGAGGTCGAATGCGGAGTGTGTGGCGTTGAACGCTAGCCTGAGGAAGGAGCAGATGAAGGTGGAGTCTCTGGAGAGAGCGCTTGAACAAAAGAATCAAGAAATTGAGGAGCTCACGAAGATCTGCGATGAACTCATCGCCAAACTCGGCACAACAACCTGAGCACTGAGCACGCTTGGATTTCAGCTTTGAGCTTAAGTCCTGACTGAacccctccttccttccttcacacCGCTTCGCCTCCATCATAGTCCTGCATGTCTGGATCTCTCTCCAACATCTGGAGCGTGGAACTGCAACATCAGCTAAAGTAACGCACCTATAATAATGAGACTCTTTAGTTTCTGAGACTTTAACACGGCAGTCTGCATGAATCGTCAGCGCTAACTGCAGTTTCTACACGATTTGTGAATCTGAACTCATTAGCACTTTGTGACGGCTCTGTTTTTGAACGCAGTGTGTTTCATCCGTGAGGCGAACGAgcgtgtgtatttgtgtgtgtctgtgtgtgagtgggtaTCATCCATCCTTGTTGTACAAGCAATGTGTTATGAGTGCGGTGGGCAGGTGagaatgtttgtatgtatatctgtattgtttgtgtgtcattCCTTCTTTACAGTACATGCactttgtaatgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321792 lncRNA upstream 125005 19011175 ~ 19012232 (+) True G271576
TU321787 lncRNA upstream 173457 18963355 ~ 18963780 (+) True G271571
TU321785 lncRNA upstream 175682 18961302 ~ 18961555 (+) True G271569
TU321784 lncRNA upstream 176470 18960528 ~ 18960767 (+) True G271568
TU321754 lncRNA upstream 176970 18958168 ~ 18960267 (+) True G271540
TU322140 lncRNA downstream 60469 19229061 ~ 19229423 (+) True G271853
TU322180 lncRNA downstream 165254 19333846 ~ 19335880 (+) True G271884
TU322221 lncRNA downstream 313905 19482497 ~ 19484904 (+) True G271923
TU322222 lncRNA downstream 320966 19489558 ~ 19494875 (+) False LOC113544004
TU322223 lncRNA downstream 327573 19496165 ~ 19496866 (+) False LOC113544004
XM_026942824.2 mRNA upstream 18124 19103193 ~ 19119113 (+) True ddhd2
XM_026942825.2 mRNA upstream 18124 19103706 ~ 19119113 (+) False ddhd2
XM_034312899.1 mRNA upstream 18124 19103741 ~ 19119113 (+) False ddhd2
XM_026942826.2 mRNA upstream 18124 19107649 ~ 19119113 (+) False ddhd2
XM_034312829.1 mRNA upstream 36056 19082521 ~ 19101181 (+) True LOC113544111
XM_034312872.1 mRNA downstream 4663 19173255 ~ 19178848 (+) True si:ch211-113d22.2
XM_026942778.2 mRNA downstream 13755 19182347 ~ 19227923 (+) True loxl2a
XM_026942777.2 mRNA downstream 13756 19182348 ~ 19227923 (+) False loxl2a
XM_026942767.2 mRNA downstream 90039 19258631 ~ 19274853 (+) True sfrp1b
XM_026942743.2 mRNA downstream 201238 19369830 ~ 19375335 (+) True pbdc1
trnas-uga_9 other upstream 200267 18936889 ~ 18936970 (+) True trnas-uga_9
trnas-uga_8 other upstream 201249 18935907 ~ 18935988 (+) True trnas-uga_8
trnas-uga_7 other upstream 201559 18935597 ~ 18935678 (+) True trnas-uga_7
trnas-uga_6 other upstream 202024 18935132 ~ 18935213 (+) True trnas-uga_6
trnas-cga_2 other upstream 202272 18934884 ~ 18934965 (+) True trnas-cga_2
TU322151 other downstream 73117 19241709 ~ 19243905 (+) True G271863
XR_004579823.1 other downstream 207505 19376097 ~ 19409418 (+) False LOC113544086
TU322206 other downstream 231006 19399598 ~ 19404927 (+) False LOC113544086
TU322526 other downstream 613835 19782427 ~ 19786819 (+) False LOC113543969
TU322527 other downstream 613835 19782427 ~ 19786819 (+) True LOC113543969

Expression Profile