RNA id: XM_034312656.1


Basic Information

Item Value
RNA id XM_034312656.1
length 3324
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC113544058
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 17552931 ~ 17609585 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgaGCCGCGGCGCTCAGCACTTCAGCGTTTCTTTTCCAGCTCCGCGACTGGCGCGCCGCTCAAATGCGAGTTTATTTCGCCGTAATTACCGCTAGCGTTACGCTAATGTCTTCGGAACGGAGTGTGGGACGGATTTAGTACTGAGCCTGAATTTCAGTACAGTCATTTGAaacgttttttttcttcaccaaccTCAGTCATTTAGACGAGTATGGTTTCGCGGTGGAGTTCTGTTTCTGTAAAAATAACATGCCTTTTCTTTTTCggttttgctgtttttgccACACAGGGGGCCCCCAGCAACGAAGTGAACCTGCTGGACTCGCGCTCTATAATGGGTGACCTCGGATGGATAGCCTACCCGAAGAACGGGTGGGAAGAAATCGGAGAGGTGGATGAAAACTATGCTCCTATTCACACGTATCAGGTGTGCAGAGTGATGGAGCACAACCAGAACAACTGGCTTCAGACGAGCTGGATCCTAAATGAAGGTGCTCAGCGAGTGTTCGTGGAGCTCAAGTTCACTCTGAGGGACTGTAACAGCCTGCCCGGTGGCTTGGGCACCTGTAAAGAGACTTTCAACGTCTACTACTACGAGTCCAATGACGATGATGACAGGAACATTCGTGAAAGCCAGTACACTAAGATCGACACCATCGCGGCTGATGAGAGCTTCACTGAGCTGGATTTGGGTGACAGAGTGATGAAACTAAACACTGAAGTAAGAGATGTTGGGCCTCTCACTAAGAAAGGCTTCTACCTGGCCTTCCAAGACCTGGGAGCCTGCATCGCCCTCGTGTCTGTGCGGGTCTTTTACAAAAAGTGTCCCATGGTGGTGAAGAACTTGGCCGTCTTCCCAGATACCATTACCGGGTCAGACTCTTCTCAGCTTCTGGAGGTGTTGGGGACCTGCGTGAATAACTCGGTGGCCGAGGAgcttcccagaatgcactgcagcgCCGAGGGGGAGTGGCTGGTGCCCATCGGGAGGTGCATGTGCCAAGCAGGCCATGAGGAAGTTAATGGCTCCTGTCAAGgcatttaatcatttatccTCCAGTGCGACATCAGGTGCTTCTCTCTTTCCTACGAGCCACACTGGTGATCAGCCTCCCCCGCAGCCCCCACCCAGAGCTGGAGGCTATAATGATGGCTGGGACTGAGGGATAGAGAGGGATGGTAGagcagaggagaagagaggagagaagcgATGGTTACACGCTCCAGCGGTGGAGGAGGGCAATGTGTCCTGTGAACGATATGGGCCCTTCCTCTTCTgtccctctccctcttttccCTCCTTTCCACAGATTGCTCCTTTTGTCTGGCTCCCGAGTTGGTGCTTTGCGATAAGACTTTTTtctctccccctttttttttcttctggagcATGGTGTGATATTTCTGTGTGAATTAATTTCCATTGAGCCTTCCTAAGGGAACGCCCGTTGGCCCTGCACTGGAGGCTGCGGCTTTTTGTGCGGTTGCCCAGGTCACGTGCAGACAAGGCAGCAATGCGTTGAAAATGAATTTTGCCCAAACGTGTGTGGGAGGACCCCCATTCAGCAGGCATGATGCGAGAGAGCGTTACAATCCCATTCCTAATGAGACGAACAAGCAGAAGGAGTATACACAGTGCCACTCCTTATTCACAGGATTGTTGCATGCAATTACAAAATGACTGTAAACACAAGAGCAGAATCCACCAGAGATGCACAAGACAGGAGCCACGCACTCTTCAGGGAGACATCCTGATTACATCCTGCTCGTCACTTGAACAAGAGCAATTTAATTAGATTGAGAGAGGAAATCATGACAGTTTAAATTGTGTAGAGTAACACAGGAATATGATGACAAGTCCAAAGGGAAGTAAAAggtgtacatatttaaattccATTCATACTCCTGCCCTGTCCGATTAACAGATCTCATGTCTCATTCGTCTAAGCTCAGTCAGTACCTGATAGGTACAGTATGGTCGAGACAGCTTGGGGAATACACTCAGTTGTAGCACccataaaaaaattaacctcCAAAATATGAACACCCAGAAATGTCAGTTTTATAGCATGGCTCTTTTTTATGTGCCTGTCTGATATGGATGATGGAGTACCACTGACTGTTGATGGATGAAGATGTGACTTCTCTTTGGTGTAGTGTTCCGTTTTATGCCCTTACAGGAATATAGGTCACATTTCCTCTGAGTGGCCAACTCTCACTCCCAAGGGTCCTTCTGTGAGAGCCAGCGAAAGCTTTCTGTTTATGGACTAACAAATCTGACGCCATCCACAGACACTTTATATCCAGAACACAGAAACAGCAGTCACTGAGTTATTTTTGAAGACTGTGTCTAAATGCATTTGTATTTTCATCATTGGACTTGGCTAAACTAGGATAAATTAAAGCACACATGTGATTTTAAACAGGTACTTATGTGAATAATTCAGTGCTTCTTCTCagatttcataaaaaaattctaagGTGAACAAAGCATCAGATtagcatattattttttttatagcaaataatgaAAGCTCATATTCTAACACGGAAAAATGTGCCAATACAGAAGTTTTGTCATCAGCCACTccctgaaaatgtttaaaaagtaatGCACAGACATGGTGCATCTGTGCCAcatgaaatgatttataaagcaTCTTGTGTTTAATCctttaaaaaggaaaacagtgCAACTATTCTGATTagaattttcagatttttggacaAAATCTGAAACTCTCAGGCTCTTTTTAAGCTGAAAATATTTTGGTGAATCCCAACTAATATTGActttcaaaaacagaaaatagataccagaaatattaattatttattttatttaatcttacCACTGACCATGTGAACAATGCGGGGCAATATTACATTTACTTAACTAAGTACATTTTAACATCTGATAAGGACGGTGTGTAGAGATGGATAAAGTGAGcgattttataaaatatacaataaaatatctgtCTATAAATGATCTGTCGAATATCTGTCACAACCCAGGCTTtgtaaatggaagaaaaacaaatgatgaaGACCGCCAACTGTACATCCAACCAATCGGCACAAGGCGTCTCTACTCGCCTGTCAATCCTGTTGCCTGTCAGTTCTGAAAGCGCTGTTTTCAGGTGTTTTGGTAAAGGCAAAGTGCGTGCCTCTGTCTCTAAACTGATTTAgctaatttcttttaaaaaatacagctaTTCCTTGAAGGGGTGGACAAATCTTAAATTCACTATATAACCCACTAGGAAAATAAAAGCTTTAGTGTGCTACCCAGTCCCATGATTTAGTTGCCCAGAAACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320948 lncRNA upstream 163952 17361945 ~ 17388979 (+) True G270913
TU320928 lncRNA upstream 260048 17277656 ~ 17292883 (+) True G270893
TU320902 lncRNA upstream 403512 17136712 ~ 17149419 (+) True G270873
TU320901 lncRNA upstream 412358 17129692 ~ 17140573 (+) True G270872
TU320899 lncRNA upstream 413950 17128017 ~ 17138981 (+) True G270870
TU321185 lncRNA downstream 122063 17689656 ~ 17690861 (+) True G271076
TU321215 lncRNA downstream 191957 17759550 ~ 17764529 (+) True G271102
TU321218 lncRNA downstream 202176 17769769 ~ 17773380 (+) True G271104
TU321386 lncRNA downstream 557229 18124822 ~ 18125676 (+) True G271235
TU321384 lncRNA downstream 558018 18125611 ~ 18125792 (+) False G271235
XM_026942846.2 mRNA upstream 156114 17355099 ~ 17396817 (+) True plppr1
XM_026942595.2 mRNA upstream 340808 17189955 ~ 17212123 (+) True snx30
XM_026942582.2 mRNA upstream 429361 17114025 ~ 17123570 (+) True enoph1
XM_026942594.2 mRNA upstream 451862 17099096 ~ 17101069 (+) True si:ch73-234b20.5
XM_026942510.2 mRNA upstream 660032 16868084 ~ 16892899 (+) False syk
XM_026942578.2 mRNA downstream 98072 17665665 ~ 17688996 (+) True lpar1
XM_034312272.1 mRNA downstream 98072 17665665 ~ 17688996 (+) False lpar1
XM_034312331.1 mRNA downstream 161025 17728618 ~ 17743596 (+) False rassf6
XM_026942492.2 mRNA downstream 161900 17729493 ~ 17743596 (+) False rassf6
XM_026942496.2 mRNA downstream 161917 17729510 ~ 17743596 (+) True rassf6
trnam-cau_42 other upstream 463553 17089307 ~ 17089378 (+) True trnam-cau_42
trnar-ccu_13 other upstream 463632 17089227 ~ 17089299 (+) True trnar-ccu_13
trnam-cau_41 other upstream 464331 17088529 ~ 17088600 (+) True trnam-cau_41
trnar-ccu_12 other upstream 464410 17088449 ~ 17088521 (+) True trnar-ccu_12
trnam-cau_40 other upstream 465112 17087748 ~ 17087819 (+) True trnam-cau_40
TU321580 other downstream 836676 18404269 ~ 18407498 (+) False G271406
TU321582 other downstream 836676 18404269 ~ 18407498 (+) True G271406
trnam-cau_43 other downstream 891492 18459085 ~ 18459156 (+) True trnam-cau_43
trnar-ccu_14 other downstream 892199 18459792 ~ 18459864 (+) True trnar-ccu_14
trnar-ccu_15 other downstream 894639 18462232 ~ 18462304 (+) True trnar-ccu_15

Expression Profile