RNA id: XM_026942694.2


Basic Information

Item Value
RNA id XM_026942694.2
length 3707
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC113544070
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24233760 ~ 24252068 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAAGTCTCATCTTGGAGAAAAGAGCTAAAGAATCCATTTTTGTTTGGATAAAAACAtccgtcattttttttttaaataagtgtataacctgatgatgatgatgatgatgatgagtagGAATTAATTGGTGTTTGATATTGTAGAAGATTTAACACCACATGTAACTCTGTCAGTGTTTAATCTCCTGTGTGAAGGCGAGGACGCTGATCATGGGGGACTGCTTACACACCTCGGCTGACAGTTTGTCTAAACTGGTGAAATGGGCGCACAGTCACGGGACGATCTGCACGCTGATCCCGAGCTTGAAGCACTTGCTGACGGAGGGAGCTCACGGAAACCTGACGGCACTGTGGGGCTGCAGCGCCGGCCACGCCTACCACTGGCCCTTAACGTCCTCCTGTAAAACGGCCCACAAGGACCGGATGTGTTACGAGCGAAGCAGCCGAGGGATCAGTTCCGAATCCCTGATGCAGGGCGCAGCGGCCATGCAGAGCAGCTCGACGCCGAGGTTCCTGAGCAGCGCGGCCAAATCGAGCAAAGGTGACTCGAACCAGACCCGAGACTCGTACGACTTCTCCAACTGCAGCGAGCCGTCCGAGATGGACGACAACGCCGAGGAGCACCTGTTCGACATCGTGTGCGAGTCCTCAGCCACCGACGAAGAGGGCGATTCCGAGCCCAGGGTCACGCCCAGAAAACGGAGCACTAAGGGGCCGAGCTCGGACGACTCTACCGATCCCGGCGCGAAGAAAATCAAGCAAGAGCGAGCTGAAGATTATTACACGGTGGCTAACGCACAAGCACAAGCCGCCTCAGAGGGCGCTCCGTCGTGTAGCATCTCCCAGTCGCCCAAACCCACCTCTCAGATCAGACCTTCATCCAGATCTTCAGCACCACACAATCCACAGCTCCTGGAGGACGGAGATCTGGTGGGCGTGTCCTCCTCACCGCCGGAGAACTCCTCCTCATCTGTGAccaaacacatgcacacgccAATCAGCGGCTCTCAAAACAGAACACACATGAACTCGCACATGAACCCGGCGGCCAATCAGAGCGCGGCGTCTCTGAGCCAACCGGGAAGGAGTGACATGGTGGAAGTGCTTCCTAACGGGGACTTCAGCCTGCCCTTTGAGGATCCCTCAGGTGTAGTGCACCCCGAAATGGACATTTTAGCAGCACAGAGTCTCAGCGCAGAGCCCAAAGGTGACGCAGcatACGAGATCGAGAGGCTGAAGGCTCTCCTGCAGGTGGAGAGGAATAAAAGCATGATGTTGGGAGAAACCATCAGCAGCCTGAAGCAGGATAAAGAGCTGCTGCAGCAGGAACTCACCAAGAAAGCGGAGCTGATCTGCGAGTTCCTCCAGGACCAGCTCCGACCAGACAAGAGGCGAGTTCATCCTTCCAGTCAGATGGAGGCAGGAAGTTCTCACCAGCTGATCGGCTCGTTTCCTGATGAAGGAGCTCCGTTCGAGTCTCCGGCGCTGTTTGACTCGTTTGAGGAGGTGGAGGTTCACCCGCTGGACCGACAGAGAACCATCAAGATCTCCTCCAAGAGGAACCGGGACGGAGAGAACACCCGCGTCAGGATGAAGAACGTGGTGGGCGTGATCGCGCGCTACATGACGGCTCTGCAGGAATTCCGCCGCAGCGTGTCCATGAAGGTGGCCTTCGACCGAGTGGGCGTGGACCGGAACACCATCTCCAGGACGGCGGCCATCGCCGAGCTGAGTCTGGCCGCGCCGGAGGTTTTCCACGCTCTGCCTCCGTGGGACGAGAAGGAGGAGACGCTGGCGCACTACGCCGTGAGGTGCAGGCAGGCCATGGACGATAACATCAAGGCCAAGATTAAAGCCATGAAAGCCAAAGGAGAGCTTTTACCCATCGTCAGTAAATAAAACGTTACGCTCAGCATCGACACTTTTCCCTCCGGTCCTCAGCGACGCTCCGGAGATTTTTAGAAGAGCACTAAAATTCCTCCTGACTTTACCCTCGACTCGTTTTTAGTCTAACGTATGAATATTTACACTACAGTATCCGAGATGATGATGGTTTTCTGTCTCGTATAAAGTTTGTGCCAGATATGGAGCAGTGTTGACCTcagtatctcacacacacacacacacacacacacacacacacacagagtttaaagTTATCACTGCAtgcttatcacacacacacacacacacacacactgatgtttttaCTTCATTTCTAAAGCACATTTTATCCCACAGTGTTCATGAGTCTcgatttctcacacacacacacacacacacacagacacacacacacacacacactgatgtttttaCTTCATTTCTAAAGCACATTTTATCCCACAGTGTTCATGAGTCTcgatttctcacacacacacacacacacacacacacggtgcttTCAAGGGCacgtaataataaaataaaatcaacttaACTTTAAAAATTCACTTTACTGAATTAAAGTATTGCGTTCATTGTAACGCTGAGGATCGGAGAGTTTTTAGCGTTATTACTGACCCAGGTACGAACAAGAACATCTCAGGTGTGTTCCTGAGTGTCTCAGTGTCGGTTCTACAAATAAAAGTCCtgagacaacaacaaaaaaaaagcacaaacatcTTAAAAGTATGaatatacaaattattaaacCACCCCCAACTCTACAAACTCCACCCTCTTCCTCTGGTGAACAAGTGTACATTTACATCAACATTTGCATATTCGAATCCGATTGGTTCTTATATTtcatgatgcaataacactttTTAGAAAACTGATTTTTCTCCACcgtgtgaatttcacacttTGGATAGTCTGTGCATTTAAATTAAGGGTTGAAAGacaagaaatttaatttaaagaaataaaaatggtcATCAGTTTTCATCTGACAGAGATTcagatttgtgttttggttATTAATTAAATTGCTGACTAACATTACTTCTAACACAGCGTTGGATAAATTGGTAAATAATTCAGTCAAAGAAGGATTTGTAATTGAACAAaagttttttaaacaaaggttaatgttattattagaaattaatattgaatcATTTCCATTTCTTCTCACATTTTTCACACCAGGGCTTCCTCCGTCCATCCGCAGACTCGAGCCACCCGTCTGAGACACTCTGCACTGCTATACGGTGATGATACAGACGTACAACAGCAGCTCGTGTccacatttctttattttttatgaaatacAGAAACAGTACAATCAGTAAACCccacagtcagtcagtcagtgtggAGCTAGTGGAGATGTTCTGCGTTTAAAACCCGACATTAAAGCTGATGTGACGTTTACATGATGGAGTTTTTTTCCGTAGAAgccaaaatgtctttttaacaagtgtttttttttcgtcGTCACTCTGCATCGAGTCGAGGCAACACGGGAAGGATCAGGTTTCCAAACGAGGAGTCTTGTGTGATGAAGAAGCCCGAAGAGTGAGCGTGTGCATGCTGAAACGGTAAAATCACAAAGTTCTTCAGCTACTATTCGTTTATTAGATTCTTCTACGTGAACAGAGCATTTTATTTTAGCGTCACTCAGTAAAACACTGGAGCTCTGAGTCGTtacctgtaaagctgctttctgcTGCGCGGCGATGTGCTGCTGCTCCGCGTGATCCCGAAATTCCTTCACTGGAGGTCTGGAAAGCGgaatactgacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325153 lncRNA upstream 6953 24226154 ~ 24226807 (+) False LOC117599389
TU325129 lncRNA upstream 108547 24124736 ~ 24125213 (+) True G274431
TU324954 lncRNA upstream 123022 24107648 ~ 24110738 (+) True G274289
TU324897 lncRNA upstream 287253 23945616 ~ 23946507 (+) True G274239
TU324880 lncRNA upstream 293649 23938033 ~ 23940111 (+) False cdc37l1
TU325166 lncRNA downstream 5839 24257907 ~ 24261576 (+) False G274457
TU325164 lncRNA downstream 7641 24259709 ~ 24261542 (+) True G274457
TU325323 lncRNA downstream 150955 24403023 ~ 24491201 (+) True G274583
TU325373 lncRNA downstream 239347 24491415 ~ 24491856 (+) True G274624
TU325331 lncRNA downstream 243842 24495910 ~ 24498527 (+) False trappc13
XM_034312840.1 mRNA upstream 941 24226799 ~ 24232819 (+) True LOC117599389
XM_026942828.2 mRNA upstream 120907 24103073 ~ 24112853 (+) True hsdl2
XM_034312839.1 mRNA upstream 222710 23971438 ~ 24011050 (+) True ugcg
XM_034312838.1 mRNA upstream 293628 23937978 ~ 23940132 (+) True cdc37l1
XM_034312903.1 mRNA upstream 388365 23835167 ~ 23845395 (+) True ambp
XM_034312929.1 mRNA downstream 24014 24276082 ~ 24296725 (+) True cops4
XM_034312916.1 mRNA downstream 57963 24310031 ~ 24359123 (+) False cwc27
XM_034312917.1 mRNA downstream 57963 24310031 ~ 24359123 (+) True cwc27
XM_034312584.1 mRNA downstream 204968 24457036 ~ 24465100 (+) True ppwd1
XM_034312919.1 mRNA downstream 228531 24480599 ~ 24497242 (+) True trappc13
TU325154 other upstream 5082 24227381 ~ 24228678 (+) False LOC117599389
TU324879 other upstream 129165 24103089 ~ 24104595 (+) False hsdl2
TU324491 other upstream 873257 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 959590 23265453 ~ 23274170 (+) False rc3h2
TU324289 other upstream 1104440 23125367 ~ 23129320 (+) False lhx6
TU325389 other downstream 277910 24529978 ~ 24587552 (+) False erbin

Expression Profile