RNA id: XM_026942740.2


Basic Information

Item Value
RNA id XM_026942740.2
length 1932
RNA type mRNA
GC content 0.47
exon number 9
gene id vsig8a
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 22706961 ~ 22766275 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaTTTCTCATCATCTTTGGGAGGTTTTATCACTTTCTCGGATGTAAATCTGAGCGGTCTGGTTCTGTGCAGTACTTTGGACCAGCTGCCTGATCGATTGACCTCCTGTTTTTGATTGTGtcggccattttgtttttataataaataatctcacacacatccaccTGCTTCTGCTTCATGACAGATATAAACAGCTTGAAGAAACAAGTAATAAATATCAGCTTTTGATTAGCCGTCGCTTGTTCGCCAGTCCTCTTTGTAGAGCAGGGTGGAGTGTAATCGCTCCCAGTCACCTGAGCTGCTTTCCCAGCAGACCTTATCACCATGGCATCAGTCGCATTTGTAAAGTAGAGCCTGAACGTCGAGCCacgagtgcgtgtgtgtgtatgtgtgtgtgcgtgtgtgagttgGAACCATACCGTCACAGCAGGATCTTCACAGAAATCTCAAGATGACCCGTGTTCCAACCACACGACTGCCAACgtcctcttttttcttcctcctgtgTGCAGCAAGCGTACTTTTCAGTGCAGACGTGACCCTGGCGATGAAGATCACCTCCACCGGGCCTCAGACTTTACAGCTGGCACAAGGAGACCAGAAAACACTGGGGTGTACGTACACACCTGGGCCTGAGGACGTCGGCGAGCTGGACATCGAGTGGACGCTGGTCAGTCCAGACACCACGCAGAAAGACAACGTGCTCCTGTCGTACTCAGGTGGAACTAAATATTTCCATGGCGACCCAGCGTTAATGAAGGGGGTGGACTTTGCGGTGAGCGACCCCACTCAGGGCGACGCCTCACTCTCGATCGCTGAgctcacagccacacacacgGGAACATACCAGTGTAAAGTGAAGAAAGCTCCAGGATTGGACATGCGCAAAATCACCCTGCAGATTCAGGTGCGGCCATCAGTGCCGAAGTGTTGGGTGGAAGGGGACGAGGGCGTGGGGACGTCCGTGTCTCTCCACTGCAGGTCGGACCGGGGTTCGTCACCCATCCATTATgtgtggaggagagagagcgGAGGTCCGATTCCTCCCATCGTTACACAGGATCCGTTCCTCGGAGAACTTCTTATTGCTAATCACTCCGTGGACTTGGCGGGTATCTACGCATGTGAGGTGTCTAACGCTGTGGGGAAAGAGCACTGTCGAATCAACCTGCAGGCCATCAAACctcctAACAGAGCCGGTGTGATCGCGGGCATCGTGTCCGGATGTCTgctgctcatcatcatcatcatcatcatcctgttGCTCCTCTTTTTCCGATGCAGACAACAGCGTCAACGCTATGAGAAAGAGTTCTCCAATGAGATCAGGGAGGACGTTCCGGCGCCCGAGAGCCGACCGGTGAGCCGCGTTTCGAGTCGTCACTCCAGACAGGCCTACAGCCAGATGAGCCAAACCGAGCACCACCAAGCAGCTTCCACCAGCACGGGATACACACTGCCCAAATACGACAACAAATACGGCTACATCGTGTGACACGTACGAACATCATACGATCATGTATGCACAAAATTACCCATAATTCAGTGCTGGAATACAATACACTCACATTGTATACAGTGTCTTATTTATAGTGTGCATTTATATGCTGATGTGATgattttaaaagacttttttttataaatttatattttagttttgtCATAAGAAGGAAATGTtcttgtctctctgtgtgtgaatgtatcatttttaattgtgtaaaaatgttgTAAAGTCAACTAAGGGCATTATAATGTATGAATATTGCGTTTTTAAAGAcattattattgcattattgaTTATATTCTGAATGTAGCTACTAATCATTTATCTAATAATCAGTATCAACAGATAAAATCCAATTCAGCAAAGACGTTATTAACACACGTCTCCTCTAATACTGTGAATAAAACACCaactttttattaaataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324041 lncRNA upstream 144638 22562104 ~ 22562325 (+) True G273473
TU323778 lncRNA upstream 668814 22037839 ~ 22038149 (+) True G273226
TU323780 lncRNA upstream 675437 22030600 ~ 22031526 (+) False LOC113544129
TU323810 lncRNA upstream 724772 21981979 ~ 21982191 (+) True G273258
TU323800 lncRNA upstream 744096 21962664 ~ 21962867 (+) True G273248
TU324179 lncRNA downstream 34806 22801081 ~ 22840120 (+) True G273600
XR_004579839.1 lncRNA downstream 226267 22992542 ~ 22994797 (+) True LOC117599377
TU324282 lncRNA downstream 226281 22992556 ~ 22994510 (+) False LOC117599377
TU324287 lncRNA downstream 271134 23037409 ~ 23038616 (+) True G273683
TU324237 lncRNA downstream 281646 23047921 ~ 23062345 (+) True G273644
XM_026942744.2 mRNA upstream 41393 22622429 ~ 22665570 (+) False lrrtm4l1
XM_026942708.2 mRNA upstream 280142 22379920 ~ 22426821 (+) True igsf9a
XM_034312727.1 mRNA upstream 280142 22379920 ~ 22426821 (+) False igsf9a
XM_026942709.2 mRNA upstream 280142 22379920 ~ 22426821 (+) False igsf9a
XM_026942855.2 mRNA upstream 332093 22369256 ~ 22374870 (+) True tmem230a
XM_026942834.2 mRNA downstream 951 22767226 ~ 22780287 (+) True atp6v1b2
XM_034312574.1 mRNA downstream 26303 22792578 ~ 22837618 (+) True itga2.2
XM_026942775.2 mRNA downstream 86206 22852481 ~ 22863830 (+) True fstb
XM_026942550.2 mRNA downstream 182618 22948893 ~ 22957601 (+) True snx18b
XM_026942841.2 mRNA downstream 238729 23005004 ~ 23015228 (+) False rasgef1bb
XR_003404475.2 other upstream 41393 22622428 ~ 22665570 (+) True lrrtm4l1
TU323909 other upstream 332088 22369274 ~ 22374875 (+) False tmem230a
TU323423 other upstream 1228083 21476112 ~ 21478880 (+) True LOC113543995
TU322810 other upstream 2164009 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 2277820 20423399 ~ 20429143 (+) True G272374
TU324289 other downstream 359092 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 499178 23265453 ~ 23274170 (+) False rc3h2
TU324491 other downstream 555296 23321571 ~ 23360503 (+) False LOC113543986
TU324879 other downstream 1336814 24103089 ~ 24104595 (+) False hsdl2
TU325154 other downstream 1461106 24227381 ~ 24228678 (+) False LOC117599389

Expression Profile