RNA id: XM_026942743.2


Basic Information

Item Value
RNA id XM_026942743.2
length 874
RNA type mRNA
GC content 0.44
exon number 6
gene id pbdc1
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19369830 ~ 19375335 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTGGGCTTTTCCAGGCAGCTGGCCCTTTAAGAGCCACGCGTCACTAATCATTTCCGGGTAAAAGGGCATCAACATGGACACGGGAGAAGTCCTCGCCTCTCTGGGTGTGGAAGGAGCTGCAGCCGCGGCACATGCGCTCTCGCTCCCCGCCGAGGCCTACGGAAATGACGCTCAGCTGGAGGTGATGTGGGCGATGAAGGCCTACAATCATGCAGAAGTTTACTTCAATCTCATTTCTTCTGTGGACCCAAAATTTCTGAAACTCACAAAAACAGACGACGTGATCTATTCCAAGTTTAGGGAAGACTTTCCGGACTTTAATATCAAGATTCTGGATCCAGAACTGCTCAAGTCGGCAGAAGCGAAAGAGAAATGGAGGCCCTTTTGTAACCACTTTGAAGGCCTGGTCGAAGACTTTAACTACGGTACGTTACTGCGTCTAGACTGCGAGAAGGACTACACAGAAGAGAACACGATATTCGCCACCAGAATCCAATTTTTTGCCATTGAGATTGCGAGAAACCGAGAAGGTTACAACGATGCTGTGCACAACGCCAGTGTGAAGGCGAAACAGCAGAAGAAAGAGCAGAGTTAACACCCGCAGCAGCACGCCTCAGTGGCcttgttttcacattttacgCCTTGTTTCTGTTGCAAGTCTGACATTCTTATGATATGATTCATTTCACATAATGGAGAAAAATACAATTTTGAGGCATAGAAACTGAAACTAAACTCCTCAATACAAGtatttaaacacattatatatCTGTAATTAAAAGTTTTTCAGTGTGgtaatgtattttgtttttgttttgcttctttcttgTCTTTATAACAAATAAACCCCCAAACAGGGTCtcagtatttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322180 lncRNA upstream 33950 19333846 ~ 19335880 (+) True G271884
TU322140 lncRNA upstream 140407 19229061 ~ 19229423 (+) True G271853
TU321792 lncRNA upstream 357598 19011175 ~ 19012232 (+) True G271576
TU321787 lncRNA upstream 406050 18963355 ~ 18963780 (+) True G271571
TU321785 lncRNA upstream 408275 18961302 ~ 18961555 (+) True G271569
TU322221 lncRNA downstream 107162 19482497 ~ 19484904 (+) True G271923
TU322222 lncRNA downstream 114223 19489558 ~ 19494875 (+) False LOC113544004
TU322223 lncRNA downstream 120830 19496165 ~ 19496866 (+) False LOC113544004
XR_004579783.1 lncRNA downstream 441843 19817178 ~ 19825232 (+) True LOC113544143
TU322531 lncRNA downstream 443132 19818467 ~ 19825232 (+) False G272180
XM_026942767.2 mRNA upstream 94977 19258631 ~ 19274853 (+) True sfrp1b
XM_026942778.2 mRNA upstream 141907 19182347 ~ 19227923 (+) True loxl2a
XM_026942777.2 mRNA upstream 141907 19182348 ~ 19227923 (+) False loxl2a
XM_034312872.1 mRNA upstream 190982 19173255 ~ 19178848 (+) True si:ch211-113d22.2
XM_026942670.2 mRNA upstream 201238 19149503 ~ 19168592 (+) False tacc1
XM_034312671.1 mRNA downstream 757 19376092 ~ 19414627 (+) True LOC113544086
XM_034312672.1 mRNA downstream 1024 19376359 ~ 19406314 (+) False LOC113544086
XM_034312673.1 mRNA downstream 48812 19424147 ~ 19440355 (+) True LOC113544087
XM_034312674.1 mRNA downstream 50407 19425742 ~ 19440355 (+) False LOC113544087
XM_034312831.1 mRNA downstream 74470 19449805 ~ 19468222 (+) True LOC117599384
TU322151 other upstream 125925 19241709 ~ 19243905 (+) True G271863
trnas-uga_9 other upstream 432860 18936889 ~ 18936970 (+) True trnas-uga_9
trnas-uga_8 other upstream 433842 18935907 ~ 18935988 (+) True trnas-uga_8
trnas-uga_7 other upstream 434152 18935597 ~ 18935678 (+) True trnas-uga_7
trnas-uga_6 other upstream 434617 18935132 ~ 18935213 (+) True trnas-uga_6
XR_004579823.1 other downstream 762 19376097 ~ 19409418 (+) False LOC113544086
TU322206 other downstream 24263 19399598 ~ 19404927 (+) False LOC113544086
TU322526 other downstream 407092 19782427 ~ 19786819 (+) False LOC113543969
TU322527 other downstream 407092 19782427 ~ 19786819 (+) True LOC113543969
XR_003404464.2 other downstream 407245 19782580 ~ 19786831 (+) False LOC113543969

Expression Profile