RNA id: XR_003404475.2


Basic Information

Item Value
RNA id XR_003404475.2
length 3142
RNA type misc_RNA
GC content 0.48
exon number 3
gene id lrrtm4l1
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 22622428 ~ 22665570 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCGCCGCGTTACTTTGGCGCGCGCACTATGCTGCTCGGCGCTCCGGCGCTCACGTGGCTTCTTTCCGGTGCATTTGGACCCAACCGGGGGAGGCGCGCGGCCGCCCGGTCAGTGCGTGTGCGCGCTTTTTGGGCACCTTaaggacagattttttttaattgatatctttttttgcaagcatgtttttttccatgaaGGACCGACTTGAGCCTTGAGACTTACGACTTAAGACTTGAGgcgcgtgtgcgcgcgtgcCTCCGTCTTCATCAGGTCTGCAGCGCGAGGAGACCGTCGGAGAATCTCCCGAGAAACCGGAGGGACGCAAAGTGCACGAGACTGGAGGCGACACGCAGCAGATATGGgtcTGTCGATTTGTGCCAAGAGATTAGCatgcctcctctctctccttgccacctttctccttcttctctgcTCCGGGGAGAAAACATGCCCCTACAGCTGCCGCTGTGAGGGTAAAATCGTCCATTGTGACTCAGCATCTTTCATTGATGTCCCAGAGAACATTTCAGTAACTTGCCAGGGTTTGTCTCTGCGAAACAATGACTTGCACACAATGCTCCCTTACCAGTTTGCCCATCTGAACCAGCTTCTCTGGCTGTATCTGGACCACAATCAGATCTCATATGTAGACAGCCGTGCTTTCCAGGGCATACGACGTCTAAAGGAGTTGGTCTTAAGCACCAACAGGATCTCACAACTACACAATGCTACGTTCCATGGTGTGCCAAATCTCCGCAGCCTGGACCTATCCTATAACAAACTCCAGGAATTGCAGCCAGGTCAGTTCCATGGTCTTCGAAAGCTACAAAATCTGCATCTACGCTCCAACGGGCTCACAACAATTCCTGTTCGGGCTTTTATAGAGTGCAGAAGCTTGGAGTTTCTGGATCTGGGGTACAATCGACTTCGCGTCCTCACGCGTACCACATTCTTGGGTTTATCTCGGCTGATGGAACTGCACCTGGAGCACAATCAGTTCTCTCGGAtcaacttctttctttttccacgCCTTGCAAACCTCCGTGGGTTGTATCTCCAGTGGAATCGTATCCGAGCAGTTAACCAAGGACTCCCCTGGATGTGGTATACCCTACAGAAGCTGGACCTGTCTGGCAATGAGATCCAGAGTCTGGATCCTGTGGTTTTCCAATGCTTGCCAAATCTTCAGGTTCTTAACTTGGAGTCTAACAAGCTTGCTAATGTGTCCCATGAGACGGTGGCAGCCTGGATTTCCCTCTCAACAATCAGCCTCGCTGGGAATGTCTGGGATTGTGGGCCGGGCATTTGTCCTCTTGTTGCCTGGTTAAAGAATTTTCGTGGAACTAAGGACACAAGTATCATTTGCAGCAGTCCTAAACATCTTCAGGGGGAAAAGGTTATGGAGGCAACAAAAAATTATATAGATTGTGAAGATTTTGAACTCATCCCCCAAACACCGTTTCCTCACCACACTTGGGAGTCAAGTATGGAAACTACCCCGGAGCCAATCTTGCCTTTGACAACTCCCGAACAACCCCTGCCTCCAGCCACCTCTGAACCACCCATCCCACCATTGTTAGCTCAACCTCTTCCTTATCCTACTATGCCTGAAACTAACCCCAGAGACACCCCTCCGAATACGCCACCACCATCCAACAGCCTACTAGTGACTCCATCTCCAGAACAAGAGGACTTATCCTTCCATAAGATTGTCGTTGGTGGTGTGGCACTTTTCTTTACAACATCACTCATCTTGACAGTGATATATGTCTCCTGTAAACGGTATCCTGGAGCCACAAGGCTGTTGCAACAGCGCTCCGTGGTTGGACGGAAGAGACGGAAAAAGAGTCCCGAGCCAGAACAGAACCTGAGCTCCCAACTGCAGGAATATTACATGAGCTACAACCCTGCTGCTACGCCGGAAGCCATGGATGTACTGGCCAATGGGACTGGTACTTGCACATGTACCATATCCGGCTCCAGGGAATGTGAGGTATGACAATGTCAAGGGCAGcctaaaatcaaaacaaatcaaagcAAATGAAACGGCTCTGGACAACAGAGaATGAATATGTGTGTCCCAGACCACTGCCTCGAGCCTGGATCGGAGACATTCCCACAATTCACTAGCTGGACTTCTATCTCCACTTGATCATCTGCAACAGGGTTCCTGTAAAGAATTTCCATCACTTCACATCCCACTTCGGCCATTTCCTTCCGTTTGGATTGTAGGAGTGTACCAGAGGAGCGAGCAAGTTGTCCTTTCCCAGAATCCCTTGCTGTGAAAGCATTTTGTATTATAATTCTCGAGACAGATTTTTGCGCGAAAAAACAGTTTCTTTTAATCGCCTGCCATTTTTTAGGAGCTTCTCCACTGCAGCCTTGTGACATGGACTTGTGAAGGACAGCGTGGACGTGGACGTGGACGTGGACGTGCACGGCTTCAGTGGTgccttttgtgcattttgttctCGTCCATTTTTTTATCCGGCAGGAATAAACGATTCGGAATCAAATGCTAAACTAATGAGCAGTGAGCGAGTCAGGAACGAGGAGATCATCTCCTGGATTTTCATCCAtaatcttcttcatcatcatcagaataAAAAGAAGGGATTTTATTCACGTTTTTCCAGTCGGACTTATTCCATGCTATTTAACAGTCTTGTGTATGAGAACGATGACGACTTTGTGATGACCCTCGGATGACCCTCGGTTGGTTGAACACGTAGTCTTGTTTACAACCTCAGCATGAACACGGAGGGTCTCAAACACTTTCACACTGACTGCAAAgcaacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgagtgtgtgtacatacttACTTATGGGACAAAGACGTGTGCATGACATTCGGGTGTCAACGTGGTTATAGGGACTTTATTGTTGGTTTCTTGGCTTCTTTACACTGTATAATGTTTCACCCTGCGTTCACACGAGCAAGCGACAAAGTGACATCATTTcctttaaatttattataaaatcaaTTAGTTAACTTGAGAGTTTATTAAATGAATGCAACTTAAATTGCAAATGTAAATGGCTCTGTAAATACCCCAGGCCTGAGTTTAGGTTTtcagcaagtttttttttttttttttttttctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324041 lncRNA upstream 60103 22562104 ~ 22562325 (+) True G273473
TU323778 lncRNA upstream 584279 22037839 ~ 22038149 (+) True G273226
TU323780 lncRNA upstream 590902 22030600 ~ 22031526 (+) False LOC113544129
TU323810 lncRNA upstream 640237 21981979 ~ 21982191 (+) True G273258
TU323800 lncRNA upstream 659561 21962664 ~ 21962867 (+) True G273248
TU324179 lncRNA downstream 135511 22801081 ~ 22840120 (+) True G273600
XR_004579839.1 lncRNA downstream 326972 22992542 ~ 22994797 (+) True LOC117599377
TU324282 lncRNA downstream 326986 22992556 ~ 22994510 (+) False LOC117599377
TU324287 lncRNA downstream 371839 23037409 ~ 23038616 (+) True G273683
TU324237 lncRNA downstream 382351 23047921 ~ 23062345 (+) True G273644
XM_026942708.2 mRNA upstream 195607 22379920 ~ 22426821 (+) True igsf9a
XM_034312727.1 mRNA upstream 195607 22379920 ~ 22426821 (+) False igsf9a
XM_026942709.2 mRNA upstream 195607 22379920 ~ 22426821 (+) False igsf9a
XM_026942855.2 mRNA upstream 247558 22369256 ~ 22374870 (+) True tmem230a
XM_026942647.2 mRNA upstream 270712 22315294 ~ 22351716 (+) True dpysl2b
XM_034312793.1 mRNA downstream 41391 22706961 ~ 22766275 (+) False vsig8a
XM_026942740.2 mRNA downstream 41393 22706963 ~ 22766275 (+) True vsig8a
XM_026942737.2 mRNA downstream 79500 22745070 ~ 22766275 (+) False vsig8a
XM_034312791.1 mRNA downstream 85135 22750705 ~ 22766275 (+) False vsig8a
XM_026942834.2 mRNA downstream 101656 22767226 ~ 22780287 (+) True atp6v1b2
TU323909 other upstream 247553 22369274 ~ 22374875 (+) False tmem230a
TU323423 other upstream 1143548 21476112 ~ 21478880 (+) True LOC113543995
TU322810 other upstream 2079474 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 2193285 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 2223481 20398280 ~ 20398947 (+) True G272367
TU324289 other downstream 459797 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 599883 23265453 ~ 23274170 (+) False rc3h2
TU324491 other downstream 656001 23321571 ~ 23360503 (+) False LOC113543986
TU324879 other downstream 1437519 24103089 ~ 24104595 (+) False hsdl2
TU325154 other downstream 1561811 24227381 ~ 24228678 (+) False LOC117599389

Expression Profile