RNA id: XM_026942767.2


Basic Information

Item Value
RNA id XM_026942767.2
length 2321
RNA type mRNA
GC content 0.41
exon number 4
gene id sfrp1b
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19258631 ~ 19274853 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctttctttctttttctttttttccctctgctgGTGCATTTGCCTTCGTGCAGCTCAATCCGGAGGCTGCAGGTTagatcaagagagaaaaagaacagaaggaGAAGACAAGGCGGAATCTTCTTCATGACTGTAAGGTATAATTAGAGATGCTTTCCATCTTTTACAGCATGCAGGCTCTTCGCGCTCGTGCCACGATGAGGGAGATGTTTTTGCTGGCTTCGCTCGCGCTCCTCAGCCGCGTGCCTTCCATCGGCTCTTCTTCCGATTACGAGTACGTCTGGAGCGCGAGCAGCCACAGAGAGAGCCGCTGCACGGAAATCCCCGAGGACCTGCGGCTGTGCCACGGCATCGGCTACACGCGGATGCTGCTGCCCAACCTGCTGGAGCACGAGAGCATGGCGGAGGTGAAGCAGCAGGCGAGCAGCTGGGTGCCGCTCGTGCACAGGAGGTGTCACGCGGACACGCAGGTTTTCCTGTGCTCGCTCTTTGCACCGgtgtgtttggagaaaaaagttGGTCCTTGCAGGCTGCTCTGTGAGTCTGTGCGTGATGCCTGCAGCCCCATCATGGAGGCGTTCGGCTTCGGCTGGCCAGAAATGCTCAACTGCAGCAGGTTTCCACTCGAGGAAAAGGATTTGTGTATCACTAAAAACCACACGGAAAAGTCTAAAGAGTCTgAACACAAGGCTGCATGTCCACAGTGTGACTTCGAGATGAACGCAGATGTCATTCTCCAGAACATGTGCGCCAGCGAGTTCACTatcaaagcaaaaataaagaaaacaaaaatacagaacgCGGATAAGAAGGTGATgctacagaagaagaagaaagcagtGCGGAATACAGCTCTGAACAATCAGGAACTGAAGAAGCTGGTGTTGTATCTAAAAACCGGAGCTCACTGTCCCTGTCAACAACTGGACAACACGAGGAATCATTATCTAATCATGGGACGCGAAGTGGAAAAACGCTACATACTGACTGGCATCCACCAGTGGGACGAAGAGAACGCAGAGTTCAGGAAAGTTCTGAACGAAATCAAAACCTACAGATGTTCTGCTCTCGattctctttttaaataattcaccCACAAAAAAGtgacacacactataacactcCTGTAGTGTTCACTCCTTAGTAATTTTGTGTCTCACTCACCCAggccattttttaaagaaattgatAACAGTATCGTAAATCCCCAAcaggggtgggtgatatgacaaaatgaTCATATTATGATATTTAAAGATGACATCACAATAAGGATCACAATATATTCAGTAGGTTCGGTAAACAAACTGCCCACAAGTGTGAAAAACTGAATTTTCAtgatctttttatttaatatctgcaaaaataaattaaaaggaggaaaaaaaagttgtaattaaagtttaacattttacaattttttagaTTCAGtcccaaaaaaaacagaaaaccagCTGCAACCAGAATTTGTAATTAGTTTAGAAACAGTTAAATGTTACTACGATACctgtgatatctcagaaaagagTAACAATATCCATATTATATCATATCTATCATGTCACCCAGCCCTAATCCATAATCCATCCTTTCATCTCAGTAATGActgtttatcttatcttatcttatatattatatttgtatatacaatattaacgcttttatttgcttttgtttgttctttcagaaatgaGACAagaccaaaatatttttttttagcaccaTCTTTGCTGggtttgcatttttctttttcatcacgATATAAGcgttctttctttcattcagttCTGTGTTGTATTTTAATCAAGTTGTTCTTACTAAGAACATAGTTGCATTACAGGTAGGACTTCAGTTTCCGTGTACTCACACATATTACTCTGCTTCTTCATTTTATCAAAATATTCACTCGTAACTAGtcatgtgctgataatcagatACAGTCCTCTATCATAACCTTCCATAGCGATCTACCTGGGAGGAGACTCCCTGCAAAGGCAGCATTTTGGaccagtgtttgtgtttcagagaGAAAACCTGTGGTTTTCTAAGGGTTATTATTTTGAACACATTTGGTAATGGCGGTAATTCTGTTCACCAATTCTGCGTTCCGTGACTTTTAAATTCAGTATATGTGCAAAATTAAACTTATCAAATGTTAGGCAGTTATTGTAAGCTGAAACTTTTATACTGATGTCTCGTTGTAGATGTGCTCAAGTTATTGCTATCTGCTTGAATTACACCTCAGAGAACTGCATTTTTCATGAAAACTCTGATTTGTAAACatggttttaattaaattttaattaaactttttactttca

Function

GO:      GO:0044699

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322140 lncRNA upstream 29208 19229061 ~ 19229423 (+) True G271853
TU321792 lncRNA upstream 246399 19011175 ~ 19012232 (+) True G271576
TU321787 lncRNA upstream 294851 18963355 ~ 18963780 (+) True G271571
TU321785 lncRNA upstream 297076 18961302 ~ 18961555 (+) True G271569
TU321784 lncRNA upstream 297864 18960528 ~ 18960767 (+) True G271568
TU322180 lncRNA downstream 58993 19333846 ~ 19335880 (+) True G271884
TU322221 lncRNA downstream 207644 19482497 ~ 19484904 (+) True G271923
TU322222 lncRNA downstream 214705 19489558 ~ 19494875 (+) False LOC113544004
TU322223 lncRNA downstream 221312 19496165 ~ 19496866 (+) False LOC113544004
XR_004579783.1 lncRNA downstream 542325 19817178 ~ 19825232 (+) True LOC113544143
XM_026942778.2 mRNA upstream 30708 19182347 ~ 19227923 (+) True loxl2a
XM_026942777.2 mRNA upstream 30708 19182348 ~ 19227923 (+) False loxl2a
XM_034312872.1 mRNA upstream 79783 19173255 ~ 19178848 (+) True si:ch211-113d22.2
XM_034312663.1 mRNA upstream 90039 19149446 ~ 19168592 (+) True tacc1
XM_026942743.2 mRNA downstream 94977 19369830 ~ 19375335 (+) True pbdc1
XM_034312671.1 mRNA downstream 101239 19376092 ~ 19414627 (+) True LOC113544086
XM_034312672.1 mRNA downstream 101506 19376359 ~ 19406314 (+) False LOC113544086
XM_034312673.1 mRNA downstream 149294 19424147 ~ 19440355 (+) True LOC113544087
XM_034312674.1 mRNA downstream 150889 19425742 ~ 19440355 (+) False LOC113544087
TU322151 other upstream 14726 19241709 ~ 19243905 (+) True G271863
trnas-uga_9 other upstream 321661 18936889 ~ 18936970 (+) True trnas-uga_9
trnas-uga_8 other upstream 322643 18935907 ~ 18935988 (+) True trnas-uga_8
trnas-uga_7 other upstream 322953 18935597 ~ 18935678 (+) True trnas-uga_7
trnas-uga_6 other upstream 323418 18935132 ~ 18935213 (+) True trnas-uga_6
XR_004579823.1 other downstream 101244 19376097 ~ 19409418 (+) False LOC113544086
TU322206 other downstream 124745 19399598 ~ 19404927 (+) False LOC113544086
TU322526 other downstream 507574 19782427 ~ 19786819 (+) False LOC113543969
TU322527 other downstream 507574 19782427 ~ 19786819 (+) True LOC113543969
XR_003404464.2 other downstream 507727 19782580 ~ 19786831 (+) False LOC113543969

Expression Profile