RNA id: XM_026942771.2


Basic Information

Item Value
RNA id XM_026942771.2
length 4874
RNA type mRNA
GC content 0.50
exon number 11
gene id pigo
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 21337235 ~ 21349823 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACGGGTGGGAAAGCAAATAAACGGTACCGGTGTTAAAACGACTCTCAATGTCGTTGTTCAGTGAAACTCATCTgaggttaaaaatgaaaatgcggCTCTGATCAGAGTgcaactggagcttgtttaagTGTTACACTGGATTTTTTCTCAGAGTggatgttgtgtgtttttcccgtgaagaaaagaaagacaacagGAGATTTGCAAGAATGAAGAGACTCCCGGTCCTCGCCTTGCTCCTGtggatatgttgtgtgttttatgttggGATTTTCCTGTTTGTGGGCGGTTTCCTCTTGGTGCGTCTGGAGGTCAACAGGACGAGCTCCTGCGAGGACGTCTTGCCTCCGACCTCTAACACGACCTCACCAGACTTCTGCTCCAAACACCCTCGCGTCCGCAGGGCCGTCATCCTCATCATCGACGCTCTGAAAGCCGAGTTCGCTCGCTACGACCCGGGAAACGAGTCCCCCAGACCGTTTGAGAACAAGCTGCCGGTTCTGGGGGAGATGGTGTCGTCTCGGGCGTCGCACGCCAGGCTGTACACGTTCCGAGCCGATCCTCCAACCACCACCATGCAGAGGATCAAGGGCTTCACCACCGGGTCCCTGCCCACGTTTATAGACGTGGGGAACAACTTCGCCTCCAGCGCCGTGCTGGAGGACAACCTGATCCACCAGCTCGGTCAGGCAGGGAAGCGAGTGGTCTTCATGGGAGACGACACCTGGGTCAGTTTGTTCCCCAGAAAGTTTCACCGCTCGCTGCCTTTCCCCTCCTTCAACGTCAAGGATCTGCACACTGTGGACAACGGAATCCTCCAGAACATCTTTCCCACCTTGGATGGAGATGACTGGGACGTGGTCATCGCTCACTTCCTGGGTGTGGATCACTGCGGCCACCGCTTCGGCCCCGATCACCCCGCCATGGCGGAGAAGCTCACTCAGATGGACGGAGTTATCAGGTCAGTGATAAAGCGTCTGCAGAACGACACTCTGTTGGTGGTGATGGGAGATCATGGGATGACTGACACCGGGGATCACGGAGGAGAAAGCCAGAAGGAAACGGACGCTGCTCTGTTTCTCTACAGCGGCTCACCTCTGTTCCCACATCCTGATGCACAGCAGGTGGAGCCTGAGGTGGTGCCTCAGACTGATTTAGTGCCTACCCTGGCCTTGCTGCTGGGAATTCCCATCCCCTACAGCAGTGTGGGTCAGGTGATGCTCCCGCTTTTCCCCAGAAAGAGCTCTCTGGATGCACCTGTGGGTCTCAGCCAGGTGGAGGCGCTGTGGATCAACGTCAAACAGGTTCATCGGTTTTTGGAGACCTACTCCAGCATGGCCAAAGACATTCCAGCAGACAGTTTGTCTCAGCTGCGGGCTCACTTCTCCCAGATCTCTTCTCAGTACATGAGCTCGATGCGTGATGGAACTCCTCCTCCCCCTGAACTGGTGGCCTCCATGCAGGAGTACCTAAGCTCCGTTAGAGAGACCTGTCGTGCCTCCTGGGCTCGCTTCAACCCTCTGAAAATGGCAGTGGGCCTGCTGGTCCTGGGTTTTGGGTGCATCTTGTGCTACGTTATCTCAGAACTGTCTGTTGCGGTCCTCCAGGGCACCATGTTGAAGACTCCAGTGCTTGCTGGGCTGATGTTCGGAGGAGCGGTTGCTGTGGGTCAAATATTCACTTTGGGATATGTGGAAGTCTCGTGGTGTTTTGGAGCTGCTGTGTTGTTTTCCGAGGCTTTATTCCTGTGGAGGGCTCGGAGGGTGTGTCCTCGTGGCCGACTGTCTCACTGGCGCCTTTTAACTCTGCCATTGCTCGTGCTCCTCCTGCGCTGTGCATCCTTGCTCTCGGACAGCTACGTGATCTCTGAGGGACGTGTGGTCACATTCTTACTGTTCAGCCTAGGCCTCTACGTTCCACTTCAACTCAACTGGGATGGACTTCTGGTGCCTGCACCTTCTACTGATACTCAGAAACCTCCCGGACTTCTTGCACCCTCGTTGCCTCCCTCGGTAGTCCGGCGTGAGAGTGGCACTTTGCTTGTTTGCATAGGCGTCTTGGTGGCGTGCCTCTACCTTTCTTTGTCATTCCACAGCTGCCGTGAAGAGCAGGGTGCTTGCCAGCCTTCAATCTTCTTGACGCCACTCTCGCGGGTTCAGGATAGTCGTCTGCGCAACTTGCACTACGTCCTGTCCCTAGCATCGCTTTCTGCCTGGGCATTCTTGCTGCATCGTTGGTTACGGCACTATGGAAACCTGAACTGCACAAGTGTGGCTGTGTTTACAGCGCGCTGCCTGCTTCCTCTTGCCTCTATCTGCATGGGACTGCACTGGGCGGTCAGTGCAACTCCAGAGGACACCTTCAGGAACCTTGCAGAGCTGATTAGCTTAGCGCACGTGATTCTGCCACGTATTGCCTTCGGTCTCCTAGGCCTTGGGATGCTGCTTGTGTGGCTGGACCCACTTACGGTGTTTCTAAAGACAAGAGCACCTTTGAACTCTAGGGGTGCCGTCATGCCTCCGCCAAGGTACCGTGCTAGCACTGGAATCAGCCCTCAGGCTGAGCTGCaccatcttataccacagttaTATCAGCGCATCCGCCAATCGCTTGACGATGAAGGCGCCAAAGGGACTGATCCAGATGGACGGCCAGCAGTAGAGGCCTACGGACTGGGCACTGTCTATTCTGCACCCCTGGTCTTGCTATATGGTCTGATGGGCCTTGGGATGCTGCTGCTACACCCTGAAGGCATGGCATTGGCCTtcctgctgctactgctgcagGCTGCAGCTCTCCTCTATCTCCACGCCTCCTCCAGCAATCTCTCCAGCCAGCAGAGTCATTCCAGTGTCTTCAGTGTTCCCTGGGCTCCTGTGGTTCTGTGGTCTCTGGCTGCCTCACAGTACTTCCATGCCACAGGTCACCTACCCACCTTCCCATCCATCCAGTGGGGCGCTGCGTTCGTGGGTTTCCCTCAGGGACACACGGGCACCGCACTGCCCGCCTTGCTCGTCACCCTCAACACCTTCTCCTCACACATCCTGTTTGCCGtCAGCTGCCCGTTGCTGCTCTTCTGGCCGTTGGTGTGTGAGCTGCGTGGGTCTCGAACCAGCCGCTTGGGTGGAGGTGAAGACGGGGACGATGTTGTCATGGAGATGAGGCTGCGAGAAAACCCACAACAGTTCAGTTCAGCTTTACTGCAGCTCGCAGCACGCTATCTGTTTATTAACGgagcacaggttttggCATCGGTTTGTGCTGCCGCTATTCTCAGGAGACACCTCATGGTGTGGAAAGTGTTTGCACCCAAgcTGATGTTCGAGGCCAGCGGGTTCATCGTGGGCAGCGTGTTTGTGCTTGTCGGTGTCGCTCTAGTCATGAGGGTCGACGTGGCCGTGGCTCGCTTATTtcagagactccttccagagaATTCCAGGTAGTACCGCCTTCTCTGTTCCTCCTACAGTTACATCCATCATCCGTCCACCTGTCCATCACTGATGATACGAGACGCACACGACTGCCAGCATGATGGACGGAAACGGCAATGGACGAAAACAGGCCTCCGTCTTTCAGAACTCTGGAGAAATGGACTCCTGCTGGTATTTTGCTCAAACACACTCTTAATCTGAGCCATCTGAGACACTGCTGCCTTGGTAGTTAAGGAAAGACCGAGGAGTGTAAGAAAGATGTCTTTTTACTGCCGTACACTGGCTGGTTTACTGAAGGGCTTTTgtagtataaacacacacacacacacacacacacacacacacacacacatacagccgTACATTTTGAGAGCTGCTATGATGAAAGCAAACTTCAGGAAGCAGGATTTGTGCTAATGCTAAGCTTGGAATACCTtaaattaaaggaatagttgGTCAAtattcactttggttaacatttTCCTACtttacccagaatgctgttctACCCGCTGATAGAGGTGCTATGGGATTTAGCCCACgtttcatctctacctaaagagactGATGCGGCGGCACTTTAAttctttagtctgtccagctctgtcTCTTCCTTTTCAAACAGGTGAGCTTTGAAAGATTCAGCTTTTATGCTAATGCCGTTATATCTTATGTTTTGAGATcgtttcaatttttttctccattttttttcccttgctgTGACATCACAGTGAAACACAACTGCTACATCATTTAATGTGCTTCAGGATAGCGTTGTGCTTTAAGGCTGTATTATGCTAAtgaggcaaataaaaaaaatctttacagcACTAAGCTAATTGATCATTTAGCATAGCTCAGTGAGTTCCAGCATATGACagctgctttcttttcctctttaacTTTTGGTTAATGTTTCTGAGCTAATCTCTTCACAATAACAATCTCTTCACGTCAGTCCAATACTTTACatagtattattattgattaacaTCACCAAAACCAGCATATCTGCATTTAGcacaggtcagaggtcactaGCTTTACCACCACAGTGAGCAATGTCGTGAGATTCAGTTTGTATcgatgtttatttttatcaaatTGTGCtgacatttatacagtatttatgtgtggttttttttttttattttatatgtttgtgtgggatttttttaaaaaaatcaaagttcttgtttttgcatttgGTATGATGAGATATGAACGGTTGAGGGAAacatgagatgtgtgtgtgtgtgtgtgtgtgtggtgtgtgggaaGGTGTGTATGGTTTCCCCACTGTATTTGTCTTAATGAAAAAGAAGCAGGTTGATTTATATGCTGTGAATGAAATGtgaattaaatctttttaattgtccttaattgtattaaattaaatgaaaatgagggagaaggtaaataaaattttgtactttGAA

Function

GO: NA

KEGG:

id description
K05288 PIGO; GPI ethanolamine phosphate transferase 3 subunit O

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323264 lncRNA upstream 346684 20990343 ~ 20990551 (+) True G272803
TU323226 lncRNA upstream 405652 20927622 ~ 20931583 (+) True G272770
TU322887 lncRNA upstream 587588 20749361 ~ 20749647 (+) True G272470
TU322859 lncRNA upstream 599735 20716511 ~ 20737500 (+) True G272450
TU322857 lncRNA upstream 612041 20659603 ~ 20725194 (+) True G272448
TU323409 lncRNA downstream 9726 21359549 ~ 21361642 (+) False LOC113544125
TU323425 lncRNA downstream 130077 21479900 ~ 21488039 (+) False G272940
TU323426 lncRNA downstream 130077 21479900 ~ 21488039 (+) True G272940
TU323428 lncRNA downstream 135328 21485151 ~ 21492672 (+) False G272940
XR_003404485.2 lncRNA downstream 138289 21488112 ~ 21492076 (+) True LOC113544190
XM_026942487.2 mRNA upstream 1297 21327106 ~ 21335938 (+) True stoml2
XM_026942819.2 mRNA upstream 142199 21188099 ~ 21195036 (+) True fam166b
XM_026942821.2 mRNA upstream 142199 21188099 ~ 21195036 (+) False fam166b
XM_026942820.2 mRNA upstream 142211 21188099 ~ 21195024 (+) False fam166b
XM_026942794.2 mRNA upstream 169693 21151369 ~ 21167542 (+) True rnf208
XM_026942774.2 mRNA downstream 9696 21359519 ~ 21361744 (+) True LOC113544125
XM_026942484.2 mRNA downstream 43998 21393821 ~ 21424847 (+) True phf24
XM_026942486.2 mRNA downstream 43998 21393821 ~ 21424847 (+) False phf24
XM_026942727.2 mRNA downstream 86079 21435902 ~ 21445264 (+) True prkab1a
XM_026942860.2 mRNA downstream 97412 21447235 ~ 21452073 (+) True LOC113544185
TU322810 other upstream 794281 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 908092 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 938288 20398280 ~ 20398947 (+) True G272367
trnae-cuc_36 other upstream 1488409 19848755 ~ 19848826 (+) True trnae-cuc_36
XR_004579782.1 other upstream 1506967 19825962 ~ 19830268 (+) False LOC117599326
TU323423 other downstream 126289 21476112 ~ 21478880 (+) True LOC113543995
TU323909 other downstream 1019451 22369274 ~ 22374875 (+) False tmem230a
XR_003404475.2 other downstream 1272605 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 1775544 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 1915630 23265453 ~ 23274170 (+) False rc3h2

Expression Profile