RNA id: XM_026942777.2


Basic Information

Item Value
RNA id XM_026942777.2
length 4545
RNA type mRNA
GC content 0.46
exon number 14
gene id loxl2a
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19182347 ~ 19227923 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCCGCAAAGTAACGGGGCTGTTCTCACATTCCGGAGGCAggaaaagaggaggagaagggggAAAGAGAAAACAGTCAAAAGCCCTGGGAGAGGGGAGAGGCGGTTCAGTGAAGAACAGGAGCGGTGAACTGGACGAGCAGAACCACTTCATCCGACTCGAGTGACTTTCCACTGTCCCAGCTGCtctacagtatatgtgtgtgtatgatgatggCCATGCGGTCGTCCTCTGTGTtcggtgtggtgtgtgtattggCCATGTGgttgtgtatgagtgtatgtgagCCCGTCAGTTTGCGTCTTTCTGGAGAGAAGCGTAAACACTACGAGGGCCGAGTGGAGCTGTATTATAGCGGAGCGTGGGGGACGGTGTGTGACGACGACTTCGACATCAACGCTGCACACGTGGTGTGTAGACAGCTCGGTTACCTCGGTGCTGTCTCTTGGTTTCCATCTGCTAAATACGGCAAAGGAGaaggtcctATCTGGTTGGATAATGTACACTGTACAGGGAGGGAGGCATCGATCTCTGACTGTCACTCAAACGGGTTTGGAGTTTCAGACTGTAAACACTCGGAGGACGTCGGAGTCGTCTGTACACAAAAACGCATCCCAGGATTCAAATACATCAGCACTGGCAGCAGCGATATGGAGACTCTGGATGCGCGAGTAGAGGACGTGCGTATCAGAGCCACCTATTCCAACCGTAAGCGTGTTCCAATCACAGAGGGCTTTGTGGAAGTGAAGGATGAGGGAAAATGGAGGCAGATCTGTGATGAGAGCTGGACTCCACAAAACAGCCGTGTAGTGTGTGGCATGTACGGCTTCCCTGGAGTGAAGGGCTTCAAGGCTAAAACCTACAAGCTTCTTTCTCAGCGCAGGAGGAAGGACTACTTTGGTTTTTCGGTGAACTGCACAGGAAATGAAGCTCATCTGCCCGAGTGTAGGATGGGCAAAGCACTGAAAGTGGAGAAAAATCTGAATGCCACGTGCGCCAATGGAATGCCTGCCGTGGTCAGCTGTGTTCCTGGAAGAGCCTTCGCACCCACACAGTCCTCAGGATTCAGAAAGGCCTACAGAGCAGAgCAACCCCTGGTGCGTCTACGTGGAGGAGGGAAGTTGGGTGAAGGTCGAGTGGAAGTGCTGAAGAACGGCAtttggggaacagtgtgtgatgataacTGGAACATGAAAGCTGCCAGTGTGGTGTGTCGAGAGTTGGGCTTTGGCACTGCTAAAGAAGCTCTGACTGGGGCACGAATGGGGCAAGgaATGGGCCCGGTGCACATGAACGAGGTGGAGTGCTCAGGGTTCGAGAAGTCTCTGACTGAGTGTCACTTTAACAGAGAAGCTCTGGGCTGCAGTCATGAGGAGGATGCAGCTGTGAAGTGTAACGTCCCTGCCATGGGCTTCCACAACAGGCTGCGTCTGAGCGGAGGCAGGAACCCGTACGAGGGCCGCGTGGAGGTGCTGGCGGAGAGGAACGGCTCGATGGTGTGGGGAACGGTGTGCAGTGACAGCTGGGGAATCATGGAGGCCatggtggtgtgcagacagctcgGATATGGCTTTGCTAACCACGCCTTCCAGgagacGTGGTACTGGCAGGGTGAGGTCAGTGCTGATGCTGTAGTGATGAGTGGAGTTCGGTGTTCAGGTACCGAGATGAGTCTGGCTCAGTGTCTCCATCACGGGAAACACATCAACTGCcccagaggaggaggaagattcGCTGCTGGAGTCTCCTGCACTGAGAGTGCCCCGGACCTGGTGCTAAACGCAGAGGTCGTTCAACACACCACGTATCTGGAGGAACGGCCGATGTACGCCCTGCAGTGCGCTCATGAGGAGAAGTGTCTCTCCGACAGCGCCAACACGGCAGACCCGTCCTCGTCCCGACGACTGCTGCGCTTCTCCTCTCAGATCCACAACAACGGCCACAGCGACTTCAGACCCCGCGCCGGACCCCACGCCTGGGTGTGGCACGACTGTCACAGGCACTACCACAGCATGGAGGTTTTCACTCACTACGACCTTCTGAGTATGAACGGCACTAAAGTGGCTGAAGGGCACAAAGCCAGCTTCTGCCTGGAGGACAGTGAGTGTGATGAagGTATACAGAAGCGTTATGCGTGTGCTAATTTCGGTGCTCAGGGGATCACAGTTGGCTGCTGGGACACATACAGACATGACATCGATTGCCAGTGGATCGACATCACTGACGTCAAACCAGGAGATTATATATTCCAGGTTGTAATTAACCCTAATTATGAAGTAGCTGAGTCTGATTACACCAATAACATCATGAAGTGTAAATGTCGCTATGATGGATATCGGATCTGGACCTATAACTGCCAAACAGGTGGCTCTCGGAGTTCGGATGTTGATGAATTTACAGGAATAATGACCAATCAGCTTCAGCGCAGGTAGGAAAATAGCCAAAGAGAGGAAAGTGAAGAGTGGAGTGGAGCCCAGTCGGACTTCTAACACGAGAACCAACCACTAGAGGACGGATGCTGACGTGACCATCTTGCACCtattgttatattgtttacTGTCTAGAAGATGTGATGTCTATCGTTACATGCCGCCTTCAGTACAGCTCTATACCTGTATCACAAATGACACTCAACCAACAGAGAACAGCACAGGAAACCCAGCTTCTCGTCTTAATAGTAATTTATTGTAGTAGGTAATGTAGTGAGGCAAAATAATGAGCTCTAAAATGCCTGTTAGCTTAGTATGTAatagatttgtttatttttgataGAATGCTATTGGCAGAGTGGTTTCTTTCTCCGACTGACCAAAGAgttttgatatattttaaagTTCAGGCAAAAGTAAAATGGCCACAATGTTTACCTTATgccaaatgtagtcaatcagccatGATATGTTTGCTTCCTTTGTTCTGCACTGGATCTTTAacactaatgtagctaacaagtaagagAAACAGTATGCAAACTGCTTGAATAAATCATTTGTCTGGTATTATCATCAGGATCATTTCTAACATACAGTTCCACCTTCACACTCCTACCTCCTTCCTGAGTCTGATGCTGGTGCTGAGTTACACCAAACTGTGCTGAGGATTCAAAATGGTGCTTCAAAGGTTTTTAGGTCAGTGTCatccttttgttcattttgtataGATATTAGTCTgtcatacagtgtcagaaaccacaaaaaGTCTGTTTGAGACCCTCGACAAAATCATTCGATGTGAGTGTAATGATTAACACATGCAGGAAACACAAAACTAGCCGCTATATAACTAGCCACTATAATGCTACACTCAAATGCTGTTCTGTTTTCATCATGTTTATGAGCAGACTCCAGATGAACAGACCACTATTGTGTTGTTCAACCTgttgaaagtaaaaaaagacacaaattgTTTCACAATATAGCTGACTTTTGTTATATGTTGTTCAAATAAAAGACTTAACAGCTGtgtactagctagctaattcttAGCCACGCCCATTAGCTAGTCAAGATGAGAGGTTTGTGTTCACCTTCATTTGTTTTGAACATACTGAAACCTTTCCTTACTTGTTAGCTGATTAgacttgtagctccagtgcaaataaataaataatgagttaTACTGATCGCATACACAAACAGTTATGCTAAGGTAGCTGTAATGGTGGCACATTTAAGGCTACAAGATGTTTTACTCAAGGCTCCCAATCTTTACTTTCCACTCACTCCCTTCAAATTAGGAGATATGTACTGTACTGAATACAACTATCACTTGAAATTAGGCATGTGCCAATATTACAGTTCCATATTGCGATAATTGTTTTATAAGGGTAATGGTATTATCGTCAGCTATTTtctgaaaacaacaacagtacCACTTCTGTCTTAATGGCTAGCATGTATAAACACAGTTAGCTCTTATAGCAAAAGCTCACAACCTCAGCTAACTAACATTActaattttagctagctagttacgcATTCTCTCCATTATACTGcattatattagctagctaaatgggaacaacttttggcaatatatgAACCAATACTTTAATCAAGATTTGCGGCACATGCCTACTTGAAAAACTGTAATGTCTACTTTCTGTACTCAAATGACATCACGCCATGCCAATGCCAATGCCATGCCGCAAGCAATATGTAGCGCTTTTGCATATTACTTTCATATTTACAGCTTGtattgcatgtttttataaaattcTGCAGATTTTATAAGAACAGTTGCTCAGCAATGGTACCATTTTCCACTCATTCAGCTTCTTTGGCTAAATAGACAATTCATCAAGCATGCCATGTAATTTATTCCTACCagtcagggattttttttgtttgtttgtttattttgttaattatacTAGATCTAGCAATGTGGAACTAAAAACTTGTTGCTGTTTTGTGAACTTGTGCCCTCCGTTTTATGAGGGCATTTACAGCCATTCGAGTGGTTAACACATCACCATGTGTTTACTGTTGAATGTATGATTCACATTGTGCCttgttttacaataaaaaacatatttatgagTCA

Function

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321792 lncRNA upstream 170116 19011175 ~ 19012232 (+) True G271576
TU321787 lncRNA upstream 218568 18963355 ~ 18963780 (+) True G271571
TU321785 lncRNA upstream 220793 18961302 ~ 18961555 (+) True G271569
TU321784 lncRNA upstream 221581 18960528 ~ 18960767 (+) True G271568
TU321754 lncRNA upstream 222081 18958168 ~ 18960267 (+) True G271540
TU322140 lncRNA downstream 1138 19229061 ~ 19229423 (+) True G271853
TU322180 lncRNA downstream 105923 19333846 ~ 19335880 (+) True G271884
TU322221 lncRNA downstream 254574 19482497 ~ 19484904 (+) True G271923
TU322222 lncRNA downstream 261635 19489558 ~ 19494875 (+) False LOC113544004
TU322223 lncRNA downstream 268242 19496165 ~ 19496866 (+) False LOC113544004
XM_034312872.1 mRNA upstream 3500 19173255 ~ 19178848 (+) True si:ch211-113d22.2
XM_034312663.1 mRNA upstream 13756 19149446 ~ 19168592 (+) True tacc1
XM_026942767.2 mRNA downstream 30708 19258631 ~ 19274853 (+) True sfrp1b
XM_026942743.2 mRNA downstream 141907 19369830 ~ 19375335 (+) True pbdc1
XM_034312671.1 mRNA downstream 148169 19376092 ~ 19414627 (+) True LOC113544086
XM_034312672.1 mRNA downstream 148436 19376359 ~ 19406314 (+) False LOC113544086
XM_034312673.1 mRNA downstream 196224 19424147 ~ 19440355 (+) True LOC113544087
trnas-uga_9 other upstream 245378 18936889 ~ 18936970 (+) True trnas-uga_9
trnas-uga_8 other upstream 246360 18935907 ~ 18935988 (+) True trnas-uga_8
trnas-uga_7 other upstream 246670 18935597 ~ 18935678 (+) True trnas-uga_7
trnas-uga_6 other upstream 247135 18935132 ~ 18935213 (+) True trnas-uga_6
trnas-cga_2 other upstream 247383 18934884 ~ 18934965 (+) True trnas-cga_2
TU322151 other downstream 13786 19241709 ~ 19243905 (+) True G271863
XR_004579823.1 other downstream 148174 19376097 ~ 19409418 (+) False LOC113544086
TU322206 other downstream 171675 19399598 ~ 19404927 (+) False LOC113544086
TU322526 other downstream 554504 19782427 ~ 19786819 (+) False LOC113543969
TU322527 other downstream 554504 19782427 ~ 19786819 (+) True LOC113543969

Expression Profile