Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026942787.2 |
| length | 1290 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 7 |
| gene id | ska1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 20864565 ~ 20870543 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0007059 | chromosome segregation | biological_process |
| GO:0031110 | regulation of microtubule polymerization or depolymerization | biological_process |
| GO:0000940 | condensed chromosome outer kinetochore | cellular_component |
| GO:0005876 | spindle microtubule | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0008017 | microtubule binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU322887 | lncRNA | upstream | 115070 | 20749361 ~ 20749647 (+) | True | G272470 |
| TU322859 | lncRNA | upstream | 127217 | 20716511 ~ 20737500 (+) | True | G272450 |
| TU322857 | lncRNA | upstream | 139523 | 20659603 ~ 20725194 (+) | True | G272448 |
| TU322835 | lncRNA | upstream | 204423 | 20565033 ~ 20660294 (+) | True | G272427 |
| TU322832 | lncRNA | upstream | 300653 | 20562176 ~ 20564064 (+) | True | G272426 |
| TU323226 | lncRNA | downstream | 57079 | 20927622 ~ 20931583 (+) | True | G272770 |
| TU323264 | lncRNA | downstream | 119800 | 20990343 ~ 20990551 (+) | True | G272803 |
| TU323409 | lncRNA | downstream | 489006 | 21359549 ~ 21361642 (+) | False | LOC113544125 |
| TU323425 | lncRNA | downstream | 609357 | 21479900 ~ 21488039 (+) | False | G272940 |
| TU323426 | lncRNA | downstream | 609357 | 21479900 ~ 21488039 (+) | True | G272940 |
| XM_034312293.1 | mRNA | upstream | 467 | 20844702 ~ 20864250 (+) | False | smarcad1b |
| XM_026942488.2 | mRNA | upstream | 468 | 20844325 ~ 20864249 (+) | True | smarcad1b |
| XM_034312698.1 | mRNA | upstream | 103049 | 20750173 ~ 20761668 (+) | True | stard7 |
| XM_034312699.1 | mRNA | upstream | 103049 | 20750175 ~ 20761668 (+) | False | stard7 |
| XM_034312564.1 | mRNA | upstream | 153691 | 20702515 ~ 20711026 (+) | True | pcyox1 |
| XM_026942450.2 | mRNA | downstream | 834 | 20871377 ~ 20880169 (+) | True | slc2a11l |
| XM_026942675.2 | mRNA | downstream | 13484 | 20884027 ~ 20901267 (+) | True | nt5c2l1 |
| XM_026942605.2 | mRNA | downstream | 89519 | 20960062 ~ 21049972 (+) | False | gnaz |
| XM_026942606.2 | mRNA | downstream | 127095 | 20997638 ~ 21049972 (+) | True | gnaz |
| XM_026942602.2 | mRNA | downstream | 127095 | 20997638 ~ 21049972 (+) | False | gnaz |
| TU322810 | other | upstream | 321763 | 20540325 ~ 20542954 (+) | True | G272408 |
| TU322768 | other | upstream | 435574 | 20423399 ~ 20429143 (+) | True | G272374 |
| TU322750 | other | upstream | 465770 | 20398280 ~ 20398947 (+) | True | G272367 |
| trnae-cuc_36 | other | upstream | 1015891 | 19848755 ~ 19848826 (+) | True | trnae-cuc_36 |
| XR_004579782.1 | other | upstream | 1034449 | 19825962 ~ 19830268 (+) | False | LOC117599326 |
| TU323423 | other | downstream | 605569 | 21476112 ~ 21478880 (+) | True | LOC113543995 |
| TU323909 | other | downstream | 1498731 | 22369274 ~ 22374875 (+) | False | tmem230a |
| XR_003404475.2 | other | downstream | 1751885 | 22622428 ~ 22665570 (+) | True | lrrtm4l1 |
| TU324289 | other | downstream | 2254824 | 23125367 ~ 23129320 (+) | False | lhx6 |
| TU324492 | other | downstream | 2394910 | 23265453 ~ 23274170 (+) | False | rc3h2 |
