RNA id: XM_026942794.2


Basic Information

Item Value
RNA id XM_026942794.2
length 2615
RNA type mRNA
GC content 0.48
exon number 3
gene id rnf208
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 21151369 ~ 21167542 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagagagagagagaaagagagaggctgagtCAGACTGGAGGAGGGAGGAAGTGAATGAGGGAGAGCGAGAAGaagcagtgagagagaaaaggaagcaGAGTGAGCAAAAAATCATGGGAGGAGGGAATGAGTGAGAATGGAggagggagaaaagagagagagagaaaagaagcagTGAACGAGTGAAGCACACAGAATAGGGGGAGGAGAGAGATGCACgatgcacacacatgtatgGACGAACAAGAAGCATTGACAGGATAGtgacagagagaagaggaaaggaggaaggagagagaaagagagagggggctACCGAGAGCATAAGACTGCAGCACTGAGAGACAGCTGAcggagaaaagaggaagagcagaacaagagatagagagaggaatTTAGAGGAATGGCCGGATGGATGGTCAGTagacagaggaaaagagaaggatTGTGAAGAACCTGAAAAAAAGGAGTAGGAAACACAAGAAGGAAGACTGCACCTCCATCCTGCCGTGACGCATCACTCCATCATCTCTCCAtcatctttccatctttccCCTCCTCCACTGTAGAAAGGATGATCTCTCCGTCTTCAGCCgcatccctccatcctcacctGGACACCTGGACTGGATAAGGCTAGGAAAAAACACCCTAAAGTAACAACCCACAGCATAGACAAGATCTGATTGGACTCCTGGGACATTCCTGGACCGATCAAGATTGGACCCACACCCTCATACACATAAACCTCTTCAGGAATTCCAAGCTGTCTTAGACAAGAACGGAAACTTCCAGGTATTTCCGTTGCCTCAAGAACCACTCACTCAAAAAAGCTCCTCAAGCAGAAGGAACTTAATCCCAAACCTAAGAGGAGACCAGATCGATTGTGCCATTGGCATAGACACAACTGTCCACTTACTGTCCCACTGACATTGGGACCACCACTACCCAAACCCAATAAGCTCGCAATTTCAGACATTATATACCTTCTTAAAGAGACTTTCTGTGTAGGTGCTTATAaggtgtataaatatatatatacatatattgtgCCAGCTTAAATACAGTTGTGGTTAAATATTATGTACTGTGTtcagccatttctttgtaatactggatataaagtatttttttgttaCTAGATCAACTAAAGTATTAATAAACAGGGTATAAGTCGCCACGTCACTGGGCTTTAAAAAGAACTGGACATTGAAATTTACCTGTGTTAACCTCTTAAACTATCTAAAGTTTCAAAGCTGTAATCAATCTTTAGCCATCTACACTAGACCAAGAAGAGTGGCCAGTGGAAGAACAATGGAAAAAAGCATGCGTCCTCACGTCCCCTGCAACGGCTGAATGTCCTTCTTGGATTATACCGAAGACACCATTCACAGGGTTGTGTTgaacaccacacacagacacacagctgcAGAGATCATCCAACTCTTTCCGGAGCGAATGTCCTGTCTGAGGCGCCAGCCTGTGACCATCCCAATGGATACCGTCAAGATCATCCAGTCGGAGAAATTCCCACGGGAGTGTCCTGTTCCTGTGACCCAGCCTCGGTTTGCACCTCCTCCCCGTGTGGCCTGGGATGGAGGAGGTGAAGGCGAGGTCATCGTCAACCAGGCCTGCAGTGACCTGTCTGTTGAGGTGAACGGTAACACCATGGTCAACCCCCGTCCTCTGGCATCACCTCCAGCACCAGTCCTCCGTCGCGAAGCGAGCTATTTAGCCCAACGCAAGGCTAGCAACAGCGAGATATGCTACCACCAATTCCACTACAAGATGGATGATGTAATCGTGAACCAGTACGTCCTGCGCTCTTCGTCCACCTCGTCCTCCTCTTCGTCTTCAACTTCTTCGGGCCCGGTGATGCCGTGTGAGCCACTGGATTGTCCGACTTGCGGGCACACGTACAACTTTGCAGGGAAGCGTCCGAGAATCCTGTCCTGCCTGCACTCGGTGTGTGAGGAGTGCCTGCAGATCCTGTATGAATCCTGCCCCAAGTATAAGTTCATTTCATGCCCCACATGCCGCGAGACCGTTCTCTTCACCGACTATGGTTTGGCCGCGCTCGCCATCAACACCAGCATCCTGAGCCGCCTGCCGTCTGAGCCTGGAGGGACCGTACAATGGGGAGGAGATGCCGACCGCAGCTGCTACCAAACGGTGCGCCAGTACTGCCAATCGGCCTGCACGTGCCACATCGCTAACCCGCTTTCCACCTGCGGCATCATGTAGACATAGATCAGTCCACCAGGTGGCACTGTTCAAGCCAAAtccacaaaaccacaaaaccaGTGACCCCACTATTCCAAAAATGCCCTCCGTCTTACCCTGCCAATGCAAATATTATCTATAGATCTATTTAGCACAGACGGTTGCTGTCTGGACTTTAAAGAAGTGAAAGAGACACTTGTGCAAGGAGCCAAGAGAAATGTTATATCAgagtaaatgtattttatgtacgAACTGATTGATCCCTTTTCCCTTAAAGTTCCTGTTTATCTTGTTTGGATGTGTTTGTCATTGACATCTCTTCACATGGGAATGCCAAGGAGACTTTGTCTCCCCTCTCTCCTgggaaaaataaagcaaatacatGAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323264 lncRNA upstream 160818 20990343 ~ 20990551 (+) True G272803
TU323226 lncRNA upstream 219786 20927622 ~ 20931583 (+) True G272770
TU322887 lncRNA upstream 401722 20749361 ~ 20749647 (+) True G272470
TU322859 lncRNA upstream 413869 20716511 ~ 20737500 (+) True G272450
TU322857 lncRNA upstream 426175 20659603 ~ 20725194 (+) True G272448
TU323409 lncRNA downstream 192007 21359549 ~ 21361642 (+) False LOC113544125
TU323425 lncRNA downstream 312358 21479900 ~ 21488039 (+) False G272940
TU323426 lncRNA downstream 312358 21479900 ~ 21488039 (+) True G272940
TU323428 lncRNA downstream 317609 21485151 ~ 21492672 (+) False G272940
XR_003404485.2 lncRNA downstream 320570 21488112 ~ 21492076 (+) True LOC113544190
XM_026942754.2 mRNA upstream 4136 21129286 ~ 21147233 (+) True slc5a1
XM_026942755.2 mRNA upstream 4136 21131556 ~ 21147233 (+) False slc5a1
XM_026942802.2 mRNA upstream 36265 21108658 ~ 21115104 (+) True ywhah
XM_026942639.2 mRNA upstream 44543 21074653 ~ 21106826 (+) True depdc5
XM_026942768.2 mRNA upstream 77255 21062685 ~ 21074114 (+) True rab36
XM_026942819.2 mRNA downstream 20557 21188099 ~ 21195036 (+) True fam166b
XM_026942821.2 mRNA downstream 20557 21188099 ~ 21195036 (+) False fam166b
XM_026942820.2 mRNA downstream 20557 21188099 ~ 21195024 (+) False fam166b
XM_026942487.2 mRNA downstream 159564 21327106 ~ 21335938 (+) True stoml2
XM_026942771.2 mRNA downstream 169693 21337235 ~ 21349823 (+) True pigo
TU322810 other upstream 608415 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 722226 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 752422 20398280 ~ 20398947 (+) True G272367
trnae-cuc_36 other upstream 1302543 19848755 ~ 19848826 (+) True trnae-cuc_36
XR_004579782.1 other upstream 1321101 19825962 ~ 19830268 (+) False LOC117599326
TU323423 other downstream 308570 21476112 ~ 21478880 (+) True LOC113543995
TU323909 other downstream 1201732 22369274 ~ 22374875 (+) False tmem230a
XR_003404475.2 other downstream 1454886 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 1957825 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 2097911 23265453 ~ 23274170 (+) False rc3h2

Expression Profile