Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026942804.2 |
| length | 1034 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 7 |
| gene id | ptgdsa |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 23815676 ~ 23831525 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006629 | lipid metabolic process | biological_process |
| GO:0006810 | transport | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0036094 | small molecule binding | molecular_function |
| GO:0005215 | transporter activity | molecular_function |
| id | description |
|---|---|
| K01830 | PTGDS; prostaglandin-H2 D-isomerase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU324813 | lncRNA | upstream | 138449 | 23675643 ~ 23677227 (+) | True | G274161 |
| TU324528 | lncRNA | upstream | 417145 | 23396808 ~ 23398531 (+) | True | G273900 |
| TU324506 | lncRNA | upstream | 482127 | 23286000 ~ 23333549 (+) | True | G273880 |
| TU324489 | lncRNA | upstream | 535887 | 23270148 ~ 23279789 (+) | True | G273865 |
| TU324841 | lncRNA | downstream | 20472 | 23851997 ~ 23852218 (+) | True | G274186 |
| TU324847 | lncRNA | downstream | 28299 | 23859824 ~ 23860703 (+) | True | G274192 |
| TU324848 | lncRNA | downstream | 37329 | 23868854 ~ 23869197 (+) | True | G274193 |
| TU324880 | lncRNA | downstream | 106508 | 23938033 ~ 23940111 (+) | False | cdc37l1 |
| TU324897 | lncRNA | downstream | 114091 | 23945616 ~ 23946507 (+) | True | G274239 |
| XM_034312902.1 | mRNA | upstream | 5847 | 23789432 ~ 23809829 (+) | True | slc27a4 |
| XM_026942790.2 | mRNA | upstream | 28893 | 23781356 ~ 23786783 (+) | True | swi5 |
| XM_026942637.2 | mRNA | upstream | 38643 | 23755117 ~ 23777033 (+) | True | fam163ba |
| XM_026942634.2 | mRNA | upstream | 94158 | 23683550 ~ 23721518 (+) | True | sardh |
| XM_026942864.2 | mRNA | upstream | 139046 | 23662619 ~ 23676630 (+) | True | cercam |
| XM_034312903.1 | mRNA | downstream | 3642 | 23835167 ~ 23845395 (+) | True | ambp |
| XM_034312838.1 | mRNA | downstream | 106453 | 23937978 ~ 23940132 (+) | True | cdc37l1 |
| XM_034312839.1 | mRNA | downstream | 139913 | 23971438 ~ 24011050 (+) | True | ugcg |
| XM_026942828.2 | mRNA | downstream | 271548 | 24103073 ~ 24112853 (+) | True | hsdl2 |
| XM_034312840.1 | mRNA | downstream | 395274 | 24226799 ~ 24232819 (+) | True | LOC117599389 |
| TU324491 | other | upstream | 455173 | 23321571 ~ 23360503 (+) | False | LOC113543986 |
| TU324492 | other | upstream | 541506 | 23265453 ~ 23274170 (+) | False | rc3h2 |
| TU324289 | other | upstream | 686356 | 23125367 ~ 23129320 (+) | False | lhx6 |
| XR_003404475.2 | other | upstream | 1150106 | 22622428 ~ 22665570 (+) | True | lrrtm4l1 |
| TU323909 | other | upstream | 1440801 | 22369274 ~ 22374875 (+) | False | tmem230a |
| TU324879 | other | downstream | 271564 | 24103089 ~ 24104595 (+) | False | hsdl2 |
| TU325154 | other | downstream | 395856 | 24227381 ~ 24228678 (+) | False | LOC117599389 |
| TU325389 | other | downstream | 698453 | 24529978 ~ 24587552 (+) | False | erbin |
