RNA id: XM_026942834.2


Basic Information

Item Value
RNA id XM_026942834.2
length 3743
RNA type mRNA
GC content 0.45
exon number 15
gene id atp6v1b2
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 22767226 ~ 22780287 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAACGCGCATGCGCAGACGCGCTGTCACGACCCGCTAGCTTTCCGTCAGCGCAGAGGCTAGGCTAAGCTAATACCGCTAATCATGAAGGCTCTTCGAGGAATGGTGAGCGGAGCCGTAAACGAGATTACCTCGGCTGTCAGCGGACACAAACCCGCCGCCGCCCGGGAGCACGTCCTCGCAGTCAGTCGTGACTACATCTCTCAACCGAGACTGACATATAAAACTGTATCAGGCGTCAACGGCCCCCTGGTGATCTTGGACCAAGTGAAGTTTCCCAGGTACGCCGAGATCGTCCACTTGACCCTCCCCGATGGCACGAAGCGCAGCGGCCAGGTGCTGGAGGTCACCGGCTCCAAAGCCGTTGTCCAGGTGTTCGAAGGAACGTCGGGCATCGATGCCAAGAAGACAAGCTGCGAATTTACAGGGGACATTTTACGCACACCTGTGTCCGAGGATATGCTGGGCCGTGTGTTTAACGGATCGGGAAAGCCGATCGACCGAGGTCCGGCTGTCTTGGCCGAGGATTACTTGGACATCATGGGCCAGCCCATCAACCCGCAGTGCCGTATCTACCCCGAGGAGATGATTCAGACTGGCATCTCTGCCATCGACGGCATGAACAGCATCGCCAGGGGGCAGAAAATCCCCATTTTCTCTGCAGCCGGTCTTCCACATAACGAGATCGCAGCACAGATCTGTCGGCAGGCCGGCCTGGTCAAGAAGTCCAAAGACGTGATGGACTACAATGAGGAGAACTTTGCCATTGTGTTTGCAGCCATGGGGGTGAACATGGAGACGGCTAGATTTTTCAAGTCTGACTTTGAGGAGAACGGCTCCATGGACAACGTGTGTCTGTTCCTGAATCTGGCCAATGATCCTACGATTGAACGCATCATCACTCCTCGCCTGGCGCTGACCGCCGCTGAGTTCCTGGCCTATCAGTGTGAGAAACACGTCCTGGTCATCCTGACAGACATGAGCTCCTACGCTGAAGCtctgagagagGTGTCTGCCGCGAGAGAGGAAGTGCCCGGACGCCGTGGTTTCCCTGGTTACATGTACACTGATCTGGCAACAATCTACGAGCGGGCGGGGCGAGTGGAGGGACGTAACGGCTCCATCACTCAGatccccatcctcaccatgccTAATGAcgACATCACGCATCCCATTCCTGATTTGACCGGCTACATCACGGAGGGTCAGATCTACGTGGACCGACAGCTTCACAACAGACAGATTTATCCTCCGATCAACGTGCTGCCGTCTCTGTCTCGACTCATGAAGTCGGCCATCGGAGAGGGAATGACGCGCAAGGACCACTCGGACGTCTCCAACCAGCTGTACGCGTGTTACGCCATCGGGAAAGACGTCCAGGCCATGAAGGCTGTAGTGGGAGAAGAAGCTCTAACGGCTGATGATCTGCTCTACCTGGAGTTTCTGCAGAAGTTTGAGAAGAATTTCATCTCTCAAGGCGCTTATGAAAACCGCACCGTGTACGAAACTCTGGACATCGGCTGGCAGCTGATGCGAATTTTCCCCAAGGAGATGCTGAAGAGGATCCCTCAGAGCACGCTGGCTGAGTTTTACCCCCGAGAGTCCAAACACTGAGCCACTGATCCGTTCTGCTGTAcgctctttatttctcttctccTGTGTATCTCTGCCCCTTAAATATAACACCCTGGATGTGATCAGCCTTCAGCTGCGTCCTTATACACTCCTCTCACTGTAGCGTTGTAGTTCTCTGCTTCTGCTCTCTGTACATGATCTAAATGTGGCCAGACCGTGATGTATATATGTTGTGAATATTGTCGCAGTGAAGtgagtgtgcaaaaaaaaaagatattgtgAGCGTATAAATTCTTATTAGATTATTAGCCAAACGTTTAGTCCTGGTGCCACCACAAGAGCACTGAAAttatcattacaaaataaaaatctatagctgtgtgtgtttgacggGCGGAAGTGAAACATAATACGAGTCTGTTCCAAATTAAAGGAATGAGAAAAAATGTACGAAAAATTTACGAAAAGCTTTATTTTACAccaaatgtagtcgatcagATGAAGGCCTCAGCGTTCTTCACACCAGCTTCCACGGACAATATGACGTATTATATTACGACGCAGACAGACAGCGGACAAACGCGCTGTGATTGGTCGTACAAATAAGGCATGCACAAACTTCTTAATTATAAGCATCATGTAAGCATGCTAAACTCATTATCCTCAACCAGTGATGTATTTATAAGCAGTTCTTCTTCATGCTCTGTGTCGCTACAGCAGCAGTCTTATTCCTTATTCGTGGAAAACACAGCGCCACCTGCAGTACTGGAGAACTCGTACGCGACGGCCAATACAAAACCGGAATGAGTATGTGAGATTGTACGTGGTTTCGTTTTCAAGAAGCCTCGCAGACGTCGTGTCCACATGAAGCATGCTGAGACCttaagacatgtttggtgtctgacgTTTCTGTCTCTTTAGATTTGCACTAGAGCTGTGAGCCTTAGgagtgggcgatatgacaaaaaaaatcatctcacGATTCTGTTTTACAAAACATCACGATATACAggttataaaacatttataataaaaatctgtaaaaatttgaacattttgcagtttttaaGATGCAAAAGTCAAATCAGCAGCTTCCAGTCATTTtgcaattcatttcatttaaacaacaacaaaaaaaacaagagtatcatgatattcacaatatttcagaaaagcgcattgtgacatcatttatcacAATGTCGATATTGTGTCATCATATGACACAAGACTAATGGACATCTCTCTCGTTCAAATCTTACCTGTAGATACGGACTGACATCTTTCATACTACGTGACGACGTTCTGTTCTGCTGTGTCTAAatgctaatatatatatacatctcaATGATTACAGACACATCGGCAGCTGCATGCGtcatttctaaatatatttttacgtGTTTCAAGTTTGCATCCTCCTAAtaccaaacaaaaaacactttaaccaacaaacaaaaaaaaaactctaaagtTACGGTTTTGTCATCTGTCGTTTTGTACGACAAAGTTTGTACTTTTGATTGGACAGTGTGTGCTTGGTCTGATCTACTTTAAGAAGCTCTGGTGtgaaactaaagaaacaaacgTATTTCGGCTGATCGATTATATTTGGgataaatagaaaattgtaaacaatttttttttaaggattacTCCTTTAATGCTACACATAGCATTATATCTTAACATAAGCTACTATCTTGCTGTTCCTTTATACTTATAAACTATATTCTGTAAAAGCCACATGTTCAGTAGTAGTGCAGATGGTggtaccttttttaaaaatgttcaccaagcaatattatttacaaaatttttttgtttgttttattttagccCATTTACAAAGCTAAATCtctggcatttaaaaaaaactatttatttttctgccttATGTATTTGATTAGTTGGATGTcgtttgctatttttattttatttattatgttgaccttttttttttattatcatgattatttattcatgccCCGGAGGccgtgtgtttagtgtgttgtTCCTTGTTCGATCGATATGCCGCAGTAAAGTGTGTATCACCTCACGTGAGTTTCACATGGAAGGATGTTTTGTCTGAATGCATGGAAATGATGTGATTGTGAAACCTCTGTATCTCATTCAGTCTGTGGAATAAAATCCGATCATGTGCCATCGA

Function

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K02147 ATPeV1B, ATP6B; V-type H+-transporting ATPase subunit B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324041 lncRNA upstream 204901 22562104 ~ 22562325 (+) True G273473
TU323778 lncRNA upstream 729077 22037839 ~ 22038149 (+) True G273226
TU323780 lncRNA upstream 735700 22030600 ~ 22031526 (+) False LOC113544129
TU323810 lncRNA upstream 785035 21981979 ~ 21982191 (+) True G273258
TU323800 lncRNA upstream 804359 21962664 ~ 21962867 (+) True G273248
TU324179 lncRNA downstream 20794 22801081 ~ 22840120 (+) True G273600
XR_004579839.1 lncRNA downstream 212255 22992542 ~ 22994797 (+) True LOC117599377
TU324282 lncRNA downstream 212269 22992556 ~ 22994510 (+) False LOC117599377
TU324287 lncRNA downstream 257122 23037409 ~ 23038616 (+) True G273683
TU324237 lncRNA downstream 267634 23047921 ~ 23062345 (+) True G273644
XM_034312793.1 mRNA upstream 951 22706961 ~ 22766275 (+) False vsig8a
XM_026942740.2 mRNA upstream 951 22706963 ~ 22766275 (+) True vsig8a
XM_026942737.2 mRNA upstream 951 22745070 ~ 22766275 (+) False vsig8a
XM_034312791.1 mRNA upstream 951 22750705 ~ 22766275 (+) False vsig8a
XM_026942744.2 mRNA upstream 101656 22622429 ~ 22665570 (+) False lrrtm4l1
XM_034312574.1 mRNA downstream 12291 22792578 ~ 22837618 (+) True itga2.2
XM_026942775.2 mRNA downstream 72194 22852481 ~ 22863830 (+) True fstb
XM_026942550.2 mRNA downstream 168606 22948893 ~ 22957601 (+) True snx18b
XM_026942841.2 mRNA downstream 224717 23005004 ~ 23015228 (+) False rasgef1bb
XM_026942840.2 mRNA downstream 224718 23005005 ~ 23016226 (+) True rasgef1bb
XR_003404475.2 other upstream 101656 22622428 ~ 22665570 (+) True lrrtm4l1
TU323909 other upstream 392351 22369274 ~ 22374875 (+) False tmem230a
TU323423 other upstream 1288346 21476112 ~ 21478880 (+) True LOC113543995
TU322810 other upstream 2224272 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 2338083 20423399 ~ 20429143 (+) True G272374
TU324289 other downstream 345080 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 485166 23265453 ~ 23274170 (+) False rc3h2
TU324491 other downstream 541284 23321571 ~ 23360503 (+) False LOC113543986
TU324879 other downstream 1322802 24103089 ~ 24104595 (+) False hsdl2
TU325154 other downstream 1447094 24227381 ~ 24228678 (+) False LOC117599389

Expression Profile