RNA id: XM_026942840.2


Basic Information

Item Value
RNA id XM_026942840.2
length 2142
RNA type mRNA
GC content 0.49
exon number 14
gene id rasgef1bb
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23005004 ~ 23016226 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCGCAGTTGCTCTGCTGGACTGAAACTGGATATTTATCCTGCGAGGGTGAGACAATGGAAGTTGGAAAAACACCGATTTTAAGTTTATAAACTCAGAATCAACTCGGGATTTGATTTGTTTCAAGTGGGAGATTGAAAACAGAGCAAAGATTTGCGAGTTTTAACCGGAGCTGCGTTTAATTTTTGTCGGTTTCGGGTTACTTACAGTCAAGGATTTTTCagtgctttgctttttttgaaGTTTCTAGGACTCCAGGATGCCCCAGACGACGCCGTTCGCAGCCAAGTTTCCTCAGAATCCGTATGGAGGAGGTCATACTCGCTACAAACCTGTGGAGGAGAGCTACAGCGGGCTGAGATATCACGACAACAGCCTCGTATCCGGATCACTCGAGGCTCTCATACAGCACCTCGTCCCCACTGTGGACTACTCACCTGACAGGTCGTACATCTTCACCTTCCTGCTGAGCTCGCGTCTCTTCCTGCATCCGTTTGAGCTCATGTCCAGAGTGTGTTACTTGTGTGTGGAGCACCACCGAGTCGGAGACCCTCAGATTGATAAGAAGCGAATCCGTGACATCGCGCCGAAGATCGTGCAGCTTCTCACCGAGTGGACGGAGACGTTTCCGTACGACTTCCGGGACGAGCGCATGATGCGCAGCCTGAAGGAGATGACGCACCGGCTGGCTTTCGGGGATGAGTTGTCTCGGAGAGCGATGCAGCGTCTGATCCAGCGACTTCTGCGCAAACTCACCATCCTGGGACAGTACGAGGAGTCTCTGGTGACGTCCAGCACGGCGGTCGCGGCGTCAGCGTCGGCGTCGGCGTCAGCGGCGTCGGCGGGGGAGAAACCGGCTGCTCTGAAGGCGAAGCAGCACGTGCGCAGGGAGGAGTGTATTCTGAACGTGTGTGACGACCCGTTCATCCTCGCTCAGCAGCTCACACACATCGAGATGGAGAGACTCAGTTACATCGGCCCTGAGGAGTTCGTCCAGGCGTTTGTTCAGAAAAGACCTGCTGATAATCATAAgagttTTTTCAGCAAGAGGAGAGTCAGTAATCTGGAAGCCTACGTCGAGTGGTTTAATCGGCTCAGTTACCTGGTGGCCACAGAAATCTGCTTGcCAGTGAAGAAGAAGCACAGAGCTCGAGTGTTGGAGTTTTTCATCGACGTGGCTCGGGAATGCTTCAACATCGGCAACTTTAACTCCTTAATGGCTATAATCACTGGGATGAACATGAGTCCCGTGTCCAGGCTGAAGAAAACCTGGGGCAAAGTCAACACGGACAAGTTCGAGATCCTGGAGCATCAAATGGATCCGTCCAATAACTTCTACAGCTACCGTACTGCACTGCGAGGAGCCACTCAGAGATCAGCTACGGCTCACACCACCAGAGAAAAGatCGTTATTCCTTTCTTCAGCTTGTTCATTAAGGACATCTACTTCCTTAACGAGGGCTGCACCAGTCGCCTGCCCAATggacacatcaactttgagAAATTTTGGGAGCTGGCCAAGCAAGTGAGTGAGTTTCTGGCGTGGAGGCAGGTGATCTGTCCgtttgagagagacagaaaaactcTGCAGTACCTCATCAGCGTGTCCGTCTTCACAGACGATGAGCTGCAGTTGGCCTCTTACGAGAGTGAAGGACCAGAAAACAACCTGGAGAGAGATACACGCCGCTCCCTCAGATCGTCTCTCAGCAGGATGTAGATGCCGATTTTTGGGAGCACTGGGAGAGTCGGTCctgactgaaatgaaatgaagtgaaaCACTGCACAAAGAGTTTTTGTTAGTATGAAAAattttcatataatatttttcCCTATATTGAATAATGAGACTGGATTCTCATCACAGCATCATCTCCATATTAGAGAAACATAAATATTCATCTCATCTCATGTACCTCATGTAAAGCAGTTGGTGTAAGCTTAGTGAAGTGTTAGAAGCGCTATAATCTGGATGAATGAAGAGCCCGTCGCTGGCTGACCTCTTCTGTTACACCGTGTaagctgtaaaatatatttctatgtttgtgtgtatgatttatatgtcatttaaatgtttttgtatggaTTTGCTGGCCTTGTGTATATAATCTGAACATTGCCTTATAAAGAAACTCTAAACATA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579839.1 lncRNA upstream 10208 22992542 ~ 22994797 (+) True LOC117599377
TU324282 lncRNA upstream 10495 22992556 ~ 22994510 (+) False LOC117599377
TU324179 lncRNA upstream 164885 22801081 ~ 22840120 (+) True G273600
TU324041 lncRNA upstream 442680 22562104 ~ 22562325 (+) True G273473
TU323778 lncRNA upstream 966856 22037839 ~ 22038149 (+) True G273226
TU324287 lncRNA downstream 21183 23037409 ~ 23038616 (+) True G273683
TU324237 lncRNA downstream 31695 23047921 ~ 23062345 (+) True G273644
TU324290 lncRNA downstream 33586 23049812 ~ 23126603 (+) False lhx6
XR_004579810.1 lncRNA downstream 52711 23068937 ~ 23073938 (+) True LOC117599346
TU324327 lncRNA downstream 119353 23135579 ~ 23135832 (+) True G273719
XM_026942550.2 mRNA upstream 47404 22948893 ~ 22957601 (+) True snx18b
XM_026942775.2 mRNA upstream 141175 22852481 ~ 22863830 (+) True fstb
XM_034312574.1 mRNA upstream 167387 22792578 ~ 22837618 (+) True itga2.2
XM_026942834.2 mRNA upstream 224718 22767226 ~ 22780287 (+) True atp6v1b2
XM_034312791.1 mRNA upstream 238730 22750705 ~ 22766275 (+) False vsig8a
XM_026942766.2 mRNA downstream 3702 23019928 ~ 23039549 (+) True antxr2b
XM_026942730.2 mRNA downstream 24240 23040466 ~ 23045078 (+) True paqr3b
XM_026942706.2 mRNA downstream 88451 23104677 ~ 23121707 (+) True rbm18
XM_026942809.2 mRNA downstream 109126 23125352 ~ 23145567 (+) False lhx6
XM_026942810.2 mRNA downstream 109126 23125352 ~ 23145567 (+) False lhx6
XR_003404475.2 other upstream 339435 22622428 ~ 22665570 (+) True lrrtm4l1
TU323909 other upstream 630130 22369274 ~ 22374875 (+) False tmem230a
TU323423 other upstream 1526125 21476112 ~ 21478880 (+) True LOC113543995
TU322810 other upstream 2462051 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 2575862 20423399 ~ 20429143 (+) True G272374
TU324289 other downstream 109141 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 249227 23265453 ~ 23274170 (+) False rc3h2
TU324491 other downstream 305345 23321571 ~ 23360503 (+) False LOC113543986
TU324879 other downstream 1086863 24103089 ~ 24104595 (+) False hsdl2
TU325154 other downstream 1211155 24227381 ~ 24228678 (+) False LOC117599389

Expression Profile