RNA id: XM_026942841.2


Basic Information

Item Value
RNA id XM_026942841.2
length 1702
RNA type mRNA
GC content 0.52
exon number 13
gene id rasgef1bb
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23005004 ~ 23016226 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCCGCAGTTGCTCTGCTGGACTGAAACTGGATATTTATCCTGCGAGGGTGAGACAATGGAAGTTGGAAAAACACCGATTTTAAGTTTATAAACTCAGAATCAACTCGGGATTTGATTTGTTTCAAGTGGGAGATTGAAAACAGAGCAAAGATTTGCGAGTTTTAACCGGAGCTGCGTTTAATTTTTGTCGGTTTCGGGTTACTTACAGTCAAGGATTTTTCagtgctttgctttttttgaaGTTTCTAGGACTCCAGGATGCCCCAGACGACGCCGTTCGCAGCCAAGTTTCCTCAGAATCCGTATGGAGGAGGTCATACTCGCTACAAACCTGTGGAGGAGAGCTACAGCGGGCTGAGATATCACGACAACAGCCTCGTATCCGGATCACTCGAGGCTCTCATACAGCACCTCGTCCCCACTGTGGACTACTCACCTGACAGGTCGTACATCTTCACCTTCCTGCTGAGCTCGCGTCTCTTCCTGCATCCGTTTGAGCTCATGTCCAGAGTGTGTTACTTGTGTGTGGAGCACCACCGAGTCGGAGACCCTCAGATTGATAAGAAGCGAATCCGTGACATCGCGCCGAAGATCGTGCAGCTTCTCACCGAGTGGACGGAGACGTTTCCGTACGACTTCCGGGACGAGCGCATGATGCGCAGCCTGAAGGAGATGACGCACCGGCTGGCTTTCGGGGATGAGTTGTCTCGGAGAGCGATGCAGCGTCTGATCCAGCGACTTCTGCGCAAACTCACCATCCTGGGACAGTACGAGGAGTCTCTGGTGACGTCCAGCACGGCGGTCGCGGCGTCAGCGTCGGCGTCGGCGTCAGCGGCGTCGGCGGGGGAGAAACCGGCTGCTCTGAAGGCGAAGCAGCACGTGCGCAGGGAGGAGTGTATTCTGAACGTGTGTGACGACCCGTTCATCCTCGCTCAGCAGCTCACACACATCGAGATGGAGAGACTCAGTTACATCGGCCCTGAGGAGTTCGTCCAGGCGTTTGTTCAGAAAAGACCTGCTGATAATCATAAgagttTTTTCAGCAAGAGGAGAGTCAGTAATCTGGAAGCCTACGTCGAGTGGTTTAATCGGCTCAGTTACCTGGTGGCCACAGAAATCTGCTTGcCAGTGAAGAAGAAGCACAGAGCTCGAGTGTTGGAGTTTTTCATCGACGTGGCTCGGGAATGCTTCAACATCGGCAACTTTAACTCCTTAATGGCTATAATCACTGGGATGAACATGAGTCCCGTGTCCAGGCTGAAGAAAACCTGGGGCAAAGTCAACACGGACAAGTTCGAGATCCTGGAGCATCAAATGGATCCGTCCAATAACTTCTACAGCTACCGTACTGCACTGCGAGGAGCCACTCAGAGATCAGCTACGGCTCACACCACCAGAGAAAAGatCGTTATTCCTTTCTTCAGCTTGTTCATTAAGGACATCTACTTCCTTAACGAGGGCTGCACCAGTCGCCTGCCCAATggacacatcaactttgagAAATTTTGGGAGCTGGCCAAGCAAGTGAGTGAGTTTCTGGCGTGGAGGCAGGTGATCTGTCCgtttgagagagacagaaaaactcTGCAGTACCTCATCAGCGTGTCCGTCTTCACAGACGATGAGCTGCAGTTGGCCTCTTACGAGAGTGAAGGACCAGAAAACAACCTGGAGAGAGATACACGCCGCTCCCTCAGGTGA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579839.1 lncRNA upstream 10207 22992542 ~ 22994797 (+) True LOC117599377
TU324282 lncRNA upstream 10494 22992556 ~ 22994510 (+) False LOC117599377
TU324179 lncRNA upstream 164884 22801081 ~ 22840120 (+) True G273600
TU324041 lncRNA upstream 442679 22562104 ~ 22562325 (+) True G273473
TU323778 lncRNA upstream 966855 22037839 ~ 22038149 (+) True G273226
TU324287 lncRNA downstream 22181 23037409 ~ 23038616 (+) True G273683
TU324237 lncRNA downstream 32693 23047921 ~ 23062345 (+) True G273644
TU324290 lncRNA downstream 34584 23049812 ~ 23126603 (+) False lhx6
XR_004579810.1 lncRNA downstream 53709 23068937 ~ 23073938 (+) True LOC117599346
TU324327 lncRNA downstream 120351 23135579 ~ 23135832 (+) True G273719
XM_026942550.2 mRNA upstream 47403 22948893 ~ 22957601 (+) True snx18b
XM_026942775.2 mRNA upstream 141174 22852481 ~ 22863830 (+) True fstb
XM_034312574.1 mRNA upstream 167386 22792578 ~ 22837618 (+) True itga2.2
XM_026942834.2 mRNA upstream 224717 22767226 ~ 22780287 (+) True atp6v1b2
XM_026942737.2 mRNA upstream 238729 22745070 ~ 22766275 (+) False vsig8a
XM_026942766.2 mRNA downstream 4700 23019928 ~ 23039549 (+) True antxr2b
XM_026942730.2 mRNA downstream 25238 23040466 ~ 23045078 (+) True paqr3b
XM_026942706.2 mRNA downstream 89449 23104677 ~ 23121707 (+) True rbm18
XM_026942809.2 mRNA downstream 110124 23125352 ~ 23145567 (+) False lhx6
XM_026942810.2 mRNA downstream 110124 23125352 ~ 23145567 (+) False lhx6
XR_003404475.2 other upstream 339434 22622428 ~ 22665570 (+) True lrrtm4l1
TU323909 other upstream 630129 22369274 ~ 22374875 (+) False tmem230a
TU323423 other upstream 1526124 21476112 ~ 21478880 (+) True LOC113543995
TU322810 other upstream 2462050 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 2575861 20423399 ~ 20429143 (+) True G272374
TU324289 other downstream 110139 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 250225 23265453 ~ 23274170 (+) False rc3h2
TU324491 other downstream 306343 23321571 ~ 23360503 (+) False LOC113543986
TU324879 other downstream 1087861 24103089 ~ 24104595 (+) False hsdl2
TU325154 other downstream 1212153 24227381 ~ 24228678 (+) False LOC117599389

Expression Profile