RNA id: XM_026943618.2


Basic Information

Item Value
RNA id XM_026943618.2
length 3523
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC113544706
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7785678 ~ 7855941 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagacagacagagagtgtgtgtgtgagagagagagagagagagagactcgcTAGAGGCGGAGTGGATCCGTAATGTAACGATCAACACGTCTTCCCGCCTCGATTAATCCCTCGATTTACATCCTGCCGGTTTCACGGAGCTAACCTATATACTGGACTTCTGCGTTGTTTTGTGCGTGCTCGCGTCTCATCATGCCGGTCACACGCTCTGCTGAAAGTCGTGCTCTAAGCGCCGCGGTCTGGGTGGGCGTCCTGTGCGGAATCATCCTGACCGAAGatgaGATTGTTCAAACTACTCCACTTCCCTCTCGTGCAGTGTTCCAGGGTACAACTCCTAGAGAAAGCCAAGATCAAGATCTTATAAGGCCTCATAAAGGGGTGGAAATCCCCACAGATCTGCTCCCTATGCTTGAGAAGGACATTGATTCTGGACATGAAGATAAAACACTGCCTCCTCAGCAGCAACACCTCCTAAGGAAGATGCTGCTTGGTCACAACAAATCTTTGCATCCAACTTGGTCTCCAGTAGAAGCTCCTGAAACCCCTAGTACACTTAATACTTACAATCCTACCACAATGACACAGGGTGCTACCAAAACCAAGCCATCACTCACTTCATTAGTCATCACAACAGTGGAGATGGAAGCAGAGCCAGACACACTCCCTCCTGCTGCATCAAGCTGTATGATCAATTTCTCAGACCCCGAGGGCTACATTGATTCGTCAGACAATCTGCCGCTTCTAGATGGCGCTTTCCTGCAGTGCACTTACACAGTGACTGTGTATACAGGTTATGGGGTGGAACTGCAgGTCAAAAGTGTTAACCTATCAGAAGGTGAGCAGCTGTCAATCAGAGGGGTAGATAAGGATGGCACTTTGCTGGTACTTGCCAATCAGACGCTGCTGGTGGAGGGTCAGGTGATCCGCAGCCCAACCAATACTATGTCAGTATTTTATCGCTCTTCACCTGAGGGCAGCATGGGCACATTCCAGCTTCATTACCAGTTGTTCCATCTGAGCTGCCCTTTGCCACGACGGCCTCACTTTGGGGAGGTATCAGTTTTGGATTTGCGCCCAGGAGGTACAGCACATTTCTCCTGCCACATGGGTTACTATCTGCAGGGTGCAACGGTGGTGACCTGCCTCAACGCCTCTCTGCCTGCCTGGAACCACCGTGAACCCAGCTGTAGAGctctctgtGGAGGTACAGTAAAAAACGCCACTGTGGGCAGAGTGCTGTCACCATCACCTAACCTGAGTTCCAACAGCACTCTTGACCGCAGCTGCTCCTGGTCCCTAGAGGCTCCCAGTGGCCAGCGACTACATCTCCATCTGGAGAGGATGGTCTTGGGACCAACAGACCGGCTTGTTTTGTGGAGTGGTCTGGATGCTGGCTCCGTAGTTCTGTTTGACTCTGGTCGGGGGATTCCTATCCCATTTGAGGGAGTCATCAGTGAGGGCCCAGCAGTCAGAATCCAGTTTATAACAGACAAGCCAAACAACCATAACACTGGTTTCAATATCCATTATGAGGCATTTGAGAAAGGCCACTGCTATGAACCATACATCCAGAACGGAAATTTCAGCACCACAGACCCAACCTACGGTGTGGGAGCCATAGTACAGTTCTCCTGtgaatctggccattctctggaGCAAGGCCCTCCTGTCATTGAGTGCATCAACACACGAGACCCTTACTGGAATGACACAGAGCCTCTGTGTAAAGCTTTATGTGGGGGAGACCTGTCTGGACCCAGTGGCTTGATTTTGTCCCCGAACTGGCCTGAATGGTACGGTGAAGGTGAGGACTGCAGCTGGAGGATTCATGTCGGTGAGGATAAGCGTATCCTGCTGGATGTGCAGCTTCTGAACCTTAGTGACAGTGATATGCTGACCATTCTGGATGGTGATGAGGTCACCACACGCATCTTGGGCCAATATGTGGGAGGAAACACTCCGTTCAAGCTTACCTCCTCTACTCCTGATCTTACCATAACCTTCCATTCTGTCCCAGCTGGCCTGGTCTTTGGCAAGGGAGAGGGTTTCATCATCAACTATGTGGAGGTGTCTCGTAATGATTCATGCCCAGACCTGCCTGAGATTCAGAATGGCTGGAAGacaacatcacacactgcactggTGCGAGGGACACGTATCACTTATCAGTGTGACCCAGGCTATGACCTGGTGGGCAGAGAGACCCTCATCTGTCAGCTGGACCTAAGCTGGAGCACCCAGCCACCCTTCTGTGAGAAAATTATGTACTGTACAGACCCAGGTCACGTTGAGCACTCTGTACGGACGCTCTCAGATCCCAAACTGCTGGTGGGAACTACCATTCAGTACAGCTGCAATCTAGGCTACATACTGCAGGGTGGTGCCATTTTAACTTGCTATGGCCGTGAACCTGGAACTCCAGTATGGACATCTCACTTGCCACGTTGTATCTTGGAAGAGTCAGTGTCCTGCGAGAATCCCGGCCTTCCTGACAATGGCTATCAGATTCTGTCTAAGCAACTGTATCTGCCGGGCGAGTCCCTGAACTTCATGTGCTATCAGGGTTATGAGCTCATCGGTGAGATCACAATCAAGTGCATACTGGGGAATCCCTCCTTTTGGAGTGGACCATTACCCATGTGTAGAGCAAATCATGAATGCTCTGGCAACCATGCTTTAGAAGTGGCAGAGGCTACGTCAGAGTCATCGCTGGATTGGGGAAACATGGCTCTGGCCATATTCATATTAGTACTGttactgtctgtcttttttggAGGCACCTATATCTATGTCAGAAGGTGTCATTCAAACCTGCGCTTGCCTCTTATGTACCCTCACCCATACAGACAGATCACTGTGGAAACTGAGTTTGACAATCCTTTATATGAGACTGGAGGGGACACAAGAGAATATGAAGTGTCAATATGAACAGACCTGCTGTTGTGGATGAATTCTCAAATGCAGAGGAAGTGATGTATATAGCTCCTGACAATTCCACTGCTACCCTACCTCCCCAACCTCCCAAAACTCCAAATCTGCAGGATGCAAGGCAGCTAAATcaggttagagagagagagagagagagaaagagagagagagagagagatgaagtaGGGAAGGGAGGTGGTCATAGGGAAGGGTGGCTGTGTAAAGCAGTTGGACAGAAGGTGAATAATTGAAAAAGTGACTGGTTTTACTATCCAATTTGAATATTATGCACTTATGACAGGAGCTgtcttgtttaaaaaagtaagtgtgcgtgtgcgtgtgtgcgtgtctgtctttctgtctgtctgccctgACTTCCTGTCTGTCATTTTAAGGCTTTGTACCTAAACACGTTTGTAGTGCAGGTTTGAAAGTAGTATTTTTCTCATGCAAGTGATGTCATATTACAACAGAGAacagataatatatatatataaatgtacatttgaaCAGAATAGTGATGAAACCATAGAAATAAAATCATTGGTAACCTGAATAACTTTCGTAATAAACTTGTGTTCTTATTTATGAAA

Function

GO: NA

KEGG:

id description
K24363 SEZ6; seizure protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314382 lncRNA upstream 75887 7707400 ~ 7709793 (+) True G265331
TU314379 lncRNA upstream 124600 7659527 ~ 7661080 (+) True G265328
TU314377 lncRNA upstream 144944 7638978 ~ 7640736 (+) True G265326
TU314376 lncRNA upstream 147614 7636886 ~ 7638066 (+) True G265325
TU314344 lncRNA upstream 199778 7585611 ~ 7585902 (+) True G265294
XR_004579852.1 lncRNA downstream 119718 7975659 ~ 7977423 (+) True LOC117599395
TU314593 lncRNA downstream 126718 7982659 ~ 7986096 (+) True G265490
TU314628 lncRNA downstream 239462 8095403 ~ 8097573 (+) True G265520
TU314654 lncRNA downstream 319573 8175514 ~ 8187611 (+) True tmem167a
TU314652 lncRNA downstream 320725 8176666 ~ 8187611 (+) False tmem167a
XM_026943758.2 mRNA upstream 15236 7718055 ~ 7770444 (+) True LOC113544796
XM_026943759.2 mRNA upstream 15236 7718055 ~ 7770444 (+) False LOC113544796
XM_026943872.2 mRNA upstream 68331 7628081 ~ 7717349 (+) True grk3
XM_026943921.2 mRNA upstream 165107 7618299 ~ 7620573 (+) True cryba4
XM_034312378.1 mRNA upstream 350754 7432541 ~ 7434926 (+) True LOC117599324
XM_026943623.2 mRNA downstream 10 7855951 ~ 7858825 (+) True tpst2
XM_026943622.2 mRNA downstream 82 7856023 ~ 7858825 (+) False tpst2
XM_026943621.2 mRNA downstream 87 7856028 ~ 7858825 (+) False tpst2
XM_034312276.1 mRNA downstream 4925 7860866 ~ 7864143 (+) True ubc
XM_026943616.2 mRNA downstream 6286 7862227 ~ 7864143 (+) False ubc
trnam-cau_33 other upstream 415341 7370268 ~ 7370339 (+) True trnam-cau_33
trnam-cau_32 other upstream 415802 7369807 ~ 7369878 (+) True trnam-cau_32
trnam-cau_31 other upstream 416264 7369345 ~ 7369416 (+) True trnam-cau_31
trnar-ccu_7 other upstream 416345 7369263 ~ 7369335 (+) True trnar-ccu_7
trnam-cau_30 other upstream 417047 7368562 ~ 7368633 (+) True trnam-cau_30
TU314651 other downstream 320725 8176666 ~ 8187611 (+) False tmem167a
XR_003404565.2 other downstream 419106 8275047 ~ 8276323 (+) True LOC113544932
XR_003404563.2 other downstream 477530 8333471 ~ 8353841 (+) False LOC113544929
XR_003404564.2 other downstream 477549 8333490 ~ 8353841 (+) False LOC113544929
TU314760 other downstream 477561 8333502 ~ 8353815 (+) False LOC113544929

Expression Profile