RNA id: XM_026943623.2


Basic Information

Item Value
RNA id XM_026943623.2
length 2316
RNA type mRNA
GC content 0.41
exon number 4
gene id tpst2
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7855327 ~ 7858825 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAATTGTGCATTTTTCAGTCAGTCTCTTCTGTTTCCTGTTACTTGAAAATTGTCTGCATGTTGAAACACGAAATGAAAAGTGCCTCTTTCTTCCAACCCGCCTACTTCCTGAAGCTGTTTGTATTTTATCTGAGCTGGTATTTTTTACATGTTGCCTTCTGTGCTTTCTACaacttttattgaaaaaaaatggttgaaGAATGGATTACTATGAAGATGAGGAATGTAGCTGCAGGTGTTAGTATACAATGCCAGATTTCTCACTAGAGTAAGTTGCTAAAATCTCTTTGCCTCTTCAAggaatattgtaaataaacagGTTCTGTGACTAGTGGTGTCACAACATGAAATATTATAAGAATTATGTATGCCCATTAGCAGTTTTGCATTTTATCTCGTGTTTGgttaaaagaatttaaaatcataatcaaGCTTCCTTGTCATGCGAGGAAGTTGTTTCAGGAAGTCCTTTAGCTGACATGTTAGAAGTACAAAAATATGCACACATCCTCCTTATTAGAGATTTCAAACCAGGTCTTTTGCGTAAAACTCTTAGTCATTAATGAACTTCAAGCATCATTCTGGTGAAGGCACACTTGCGGTGCAAGTCATGCAAATGAGCAGTGCTTGCATttggtatttttttattgtacaacATTTTTTAGTACTGCAATAAGCATTACTCATTACAGAAATGCAGTAACAAAACAATGTTCTAACAAATATGATGTTACTTTTTCTGGGCCATTGTGCCtgcaaacattttcaaaacacttCGAAAAAGTGTGAATTCTGGAAGACTTAGATTATCTGATTGTACTGTAACTGATTGTAATAGAGGAAGTTGGGTGAGTTCCTCATTTTCACACGTTGTCTTTGCTTATATGTAAAACTACTCACACTGACAGGTTTCTGCTGTCTGTTGGCTTTTCTGAATACAGTGGCCAGCTAACTGAGTGATGCGGCTGTCTGTTCGACGGGGATTCATACTGCTATTGTGTCTGTTTGGACTGTATGCTGCTGTGAAAGCACTGTACTATATGCTTATATGCCAGAGTGGATATCCTCATAGCCTAGGAGTGTCAGTACTAGTTAAGGGCAGCAATCAGACCCTATACCACTACAGCCAGGACTCACcaatggtgtttgttggtggaGTACCTCGCTCAGGCACCACGCTGATGCGTGCTATGCTTGATGCCCACCCGGATATCCGCTGTGGAGAGGAGACCCGGGTGATCCCCCGGCTTCTGGCTCTGCGTCATGGCTGGAGGAGGTCGGCAGAAGACCGCTGGGCCCTGGATGAAGAAGAGATCACCCAGGAGATGCTGGACTCAGCCACAGCTGCCTTCTTGCTTGAGGTCATTGCTCGTCATGTTTTCTTATACTATGCTTTCAGCTCAAAGTTTCTTCTTATGGTACGTGATGGTCGGGCCTCAGTGCACTCTATGATCTCAAGACAAGTTACAATTGCTGGTTTTGACCTTTCCAGCTACAGGGACTGCCTTAGCAAGTGGAGCCAAGCAATAGAGGTCATGTTATTTCAGTGCACATTGGTAGGTTCTACACGCTGTCTGACCATTCGCTATGAAAATTTGGTCCTGCAGCCACGCACCACAATGGTGAAAGTACTGGAGTTCCTGAATGTACCATGGCATGAGGGGGTACTTCACCATGAGGAAGCTATTGGGCAGCCTGGAGGAGTTTCTTTATCTCGAATAGAGCGCTCCACTGACCAGGTCATCAAACCAGTTAACCTAGAGGCACTCACTCGCTGGGTAGGCCACATTCCAACTGATGTTCTAAAAGATATGGATAATATTGCTCCAATGCTTAACAAGCTGGGCTATGACCCCACTGCCAATCCCCCAGACTATGGCCAACCAGATCCCGAAGTGATTCATAATACAGAAAGGGTGCTCAAGGGAGATTTTAAGCCTCCAGCAAGTTTGAAAAGACCATCACAAGAAAGTATGAcataaaaatatctgtatatatctggtccttttttatattttaattaagtgCAGGttaaaacatgttccagcaagacaatgctCCGCGCACAAATTTTACACCTATTGACATGTTTTCgtgaggtggaaggaaacccacgtggacactaggagaacatgcagaactccacacatacagtaacctGCAATGCTACACGCACTCTACCATCCTGCTCATGTTggaacactgtttttttttattactgtttgtaGTTTAAACTACACAATTGTATTGTAATTTTTGACAAATATAGagaaaaattataattaaagttGTAACAAATGATAAGAGTTAACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314483 lncRNA upstream 3686 7851915 ~ 7852265 (+) True G265420
TU314482 lncRNA upstream 4322 7851370 ~ 7851629 (+) True G265419
TU314481 lncRNA upstream 6917 7848803 ~ 7849034 (+) True G265418
TU314446 lncRNA upstream 8074 7844793 ~ 7847877 (+) True G265383
TU314480 lncRNA upstream 11295 7843789 ~ 7844656 (+) True G265417
XR_004579852.1 lncRNA downstream 116834 7975659 ~ 7977423 (+) True LOC117599395
TU314593 lncRNA downstream 123834 7982659 ~ 7986096 (+) True G265490
TU314628 lncRNA downstream 236578 8095403 ~ 8097573 (+) True G265520
TU314654 lncRNA downstream 316689 8175514 ~ 8187611 (+) True tmem167a
TU314652 lncRNA downstream 317841 8176666 ~ 8187611 (+) False tmem167a
XM_034312496.1 mRNA upstream 10 7785678 ~ 7855941 (+) False LOC113544706
XM_026943618.2 mRNA upstream 10 7785680 ~ 7855941 (+) True LOC113544706
XM_034312495.1 mRNA upstream 10 7806609 ~ 7855941 (+) False LOC113544706
XM_034312494.1 mRNA upstream 10 7806646 ~ 7855941 (+) False LOC113544706
XM_026943620.2 mRNA upstream 10 7810728 ~ 7855941 (+) False LOC113544706
XM_034312276.1 mRNA downstream 2041 7860866 ~ 7864143 (+) True ubc
XM_026943616.2 mRNA downstream 3402 7862227 ~ 7864143 (+) False ubc
XM_026943615.2 mRNA downstream 3402 7862227 ~ 7864143 (+) False ubc
XM_026943775.2 mRNA downstream 31216 7890041 ~ 7910255 (+) False scarb1
XM_034312582.1 mRNA downstream 31216 7890041 ~ 7906763 (+) False scarb1
trnam-cau_33 other upstream 485612 7370268 ~ 7370339 (+) True trnam-cau_33
trnam-cau_32 other upstream 486073 7369807 ~ 7369878 (+) True trnam-cau_32
trnam-cau_31 other upstream 486535 7369345 ~ 7369416 (+) True trnam-cau_31
trnar-ccu_7 other upstream 486616 7369263 ~ 7369335 (+) True trnar-ccu_7
trnam-cau_30 other upstream 487318 7368562 ~ 7368633 (+) True trnam-cau_30
TU314651 other downstream 317841 8176666 ~ 8187611 (+) False tmem167a
XR_003404565.2 other downstream 416222 8275047 ~ 8276323 (+) True LOC113544932
XR_003404563.2 other downstream 474646 8333471 ~ 8353841 (+) False LOC113544929
XR_003404564.2 other downstream 474665 8333490 ~ 8353841 (+) False LOC113544929
TU314760 other downstream 474677 8333502 ~ 8353815 (+) False LOC113544929

Expression Profile