RNA id: XM_026943624.2


Basic Information

Item Value
RNA id XM_026943624.2
length 2126
RNA type mRNA
GC content 0.53
exon number 16
gene id gdpd5a
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 3030274 ~ 3062807 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aggagggagggagggagaggtagagagagagagagagagagagggtttcAGCACAACAAGCGAGTCAGTCGGAAGAAGCGCGGATATAAAGTGTCATTCTGCATTTCTTCTGTATCTTTTCATCCACCACTCAGAAGGAAAGAAACGAGCAGAAAGTGAAACTGAGTTAGATTTTGGGGGAAGATGAACACCGTTAGAGGAGAAGTGTGAACTCCACGCAAACTTACCTGCGCTGTTCACCTTGTGAAGAGAGAAGAGGATTAAAGCAGCTGTAGAGgTTTCCTGACACCCAGTGGGATGCGAGCAGATCGGTGGTGGGCCGATTGTCAAGGAGCATGGTGAAACACCAACCCTTACAGGTCTACGAGAGACAGCTGTGTTTGTCCTGCCTGACCGGGATCTACGGGTGCCGCTGGAAACGCTACCAGCGCTCCCACGATGACAGCTCCAAGTGGGAGTGCTCCTGGTTCCTCATCCTGTGCTCCTCgtttctcctcctcctcgtctgGTCTTACTTTTGGTGGGAGGCTCAAAATGACTACAACGAGTTTAACTGGTTGTTATATAACCGATCAGGGGAGTGGAGCGATGGCACGGTCCCCATTCTCGCCACCACACTCGTGGGATTCTCTTACACTGCATTTTTAATGATATTAGGCCTTTGCCATATCACACTGGGGCAGCAGCTCAACCTCTACTGGATTCATAAGaTTGGCGTGCTGGCCGTCCTGCTCACTACAATCACAGGTGTGGTGTCCATCGATGACATATGGAGGGACGAATgggacatcatcatcatctcgcTACAGTCGACTGGACCCTTCCTGCACATTGGGGCCGTGGCTGCCATGACGGCGTTGGGGTGGATCGTCGCCGGCCAGGTCGTGCGTGGAGGAAGAACGAgatttcaggtgctgctgctcctgctgtatttgtgtgttcTCCTGGCTCTCTATCTGACTCCCCTCACCATCTCCTCCCCCTGCATCATGGACCGATCGAACCTAAAGCCACGGCCCGCCATCATCGGCCGTCGAGGAGCTCCAATGCTCGCTCCAGAAAACACCATCATGTCCTTCAACAAAGCCTTGCAGCAGAAAGTCAGTGGCTTCGAGGCTGACGTCACCATCAGTGCAGATGGAGTGGCCTTCGTGATGCGTGACCGTACGCTGCGCCGCACCACAGACGTGGCCCGGGTCTTTCCTCAGAGGCAACACGAAGACGCCTCACTCTTCACCTGGCCTGAGATACGCACTCTAAACGCTGGCTTGTGGTTTCTCAggGATGATCCATACTGGACAGTCCAGTTCATGTCTGTGAAGGAGCGAAGCCGAGCAGCCAATCAAACGGTGTGTAGTCTGGTGGAACTGCTGCGTCTGGCGGTGAAGACAAACCGCTCAGTGATGTTCAGCCTGCGCAGACCTCCAGCTCAACACCCACGACACGAGCTCTGGATCAGCGATGCCCTAAAGGCCATACACCGCTCAGGCATCCAGTCAGAACAGgTGATGTGGATGACAGACTGGTCCAGGAAGAAGGTGCGATCTGCTGTGCCTCTGCTGGAGCAGACGGAGGAGGATAAGCATTCTGCAGAGGAATTTAAAGAAAGGGGAGTCCATACAGTGAGCATACACTACAGTCAAACAACAGAACCAGAAatcagCAGGCGCTTCAGAGGCAGCAACGTGAGCATGAACGTGTACCCAGTGAACGAGCCGTGGCTTTACTCAGTGCTGTGGTGCAGCGGCGTTCAGTCCGTCTCGTCCGACGCTCCTCACATCCTCCGCAAAGTGCCTCAGCCCATCTGGTTAATGAGTCCAGACGAGTACTGCTTGATATGGATCATGGCTGATCTAATATCCGCAGCAGTCATCATaggaatatttatatttcagagGTGGAGGATGAGCGGGATGCGCAGCTACAACCCGGAGCAGATCATGCTCAGTGCTGTGGTGCGAAGACCCAGCCGTGACGTCAACATCATGAAAGAGAAACTCATCTTCTCAGAAATAAACAACGGAGTCAGTAGCACAGACGAGCTGCCTCTCTACACAGAGCACAGATATGAAGGATACACACGTGACACCATTTCCCGCTGAGCCGGATATCATTTGGAGAGCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311225 lncRNA upstream 43599 2986475 ~ 2986675 (+) True G262637
TU310997 lncRNA upstream 237866 2757070 ~ 2792408 (+) False G262440
TU311004 lncRNA upstream 238563 2757070 ~ 2791711 (+) False G262440
TU310996 lncRNA upstream 270122 2756607 ~ 2760152 (+) True G262440
TU311260 lncRNA downstream 3968 3066156 ~ 3067730 (+) True G262662
TU311264 lncRNA downstream 4998 3067186 ~ 3068928 (+) True G262663
TU311279 lncRNA downstream 78830 3141018 ~ 3141616 (+) False nrip1b
TU311351 lncRNA downstream 127164 3189352 ~ 3194482 (+) True G262741
TU311347 lncRNA downstream 127748 3189936 ~ 3238817 (+) True G262737
XM_026943916.2 mRNA upstream 213011 2795491 ~ 2817263 (+) True pcp4a
XM_026943976.2 mRNA upstream 247849 2767552 ~ 2782425 (+) True igsf5a
XM_034312856.1 mRNA upstream 283006 2744396 ~ 2747268 (+) False rps25
XM_034312657.1 mRNA upstream 301856 2721350 ~ 2728418 (+) True slc37a4b
XM_026943910.2 mRNA downstream 53981 3116169 ~ 3141753 (+) True nrip1b
XM_034312707.1 mRNA downstream 54191 3116379 ~ 3141753 (+) False nrip1b
XM_026943912.2 mRNA downstream 59819 3122007 ~ 3141753 (+) False nrip1b
XM_026943825.2 mRNA downstream 88278 3150466 ~ 3178938 (+) True usp25
XM_034312675.1 mRNA downstream 88279 3150467 ~ 3178938 (+) False usp25
TU311007 other upstream 213016 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 682889 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 1610785 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 1610839 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 1793142 1205991 ~ 1237132 (+) True G261503
TU312620 other downstream 2015693 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 2946612 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 4004683 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 4053872 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 4306292 7368480 ~ 7368552 (+) True trnar-ccu_6

Expression Profile