RNA id: XM_026943660.2


Basic Information

Item Value
RNA id XM_026943660.2
length 2266
RNA type mRNA
GC content 0.45
exon number 16
gene id grk5
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 5742231 ~ 5759098 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTAGTTAGAGTCCATTTGcagtataacacacactgataggCCTGACAACATGGATAAGACAAAGTGATTCCTTTTTAGGAATGTGAAACTATCTTTCCTTTAGAATCTCACTTTAGAGGCATAAACGTAACCCGAGACGAAATATTCCAGATTTATTGTGCCTGCTGTTTTGTGACACAGTGGAGTGATGGAGATCGAGTCTATGGCAGCGAACACTGCACTGATCAGGGCTAGAGAAGGTGGTGGTGGCAAACGCAAAGGAAGAAGCAGGAGATGGAAAGAGCTGCTGCAATTTCCTCACATCAACGAATGTGCCGAGCTGGAAAGCACCATTGaacgAGACTACTACAGCCTGTGTGTGGAACAGCCTATAGGGAAGGCATTATTCCAACTTTACTGTGAGACAAGACCAGAGCTCAAATGCTGTATCGACTTCCTGGATGCAACGGAAGAGCATGAGGTCATACCAGCCGAGAAATGGAAGAGCTTTGGGAATGAAATTATTTCAAAGTATCTCAACACAGAGTCTCCTCGATTTGTGCAGGAGATACCAGATAACCATCGGGAGATATGCAAGCAGAACCTGGAGTGCAACATTTCCTACAGTCTCTTCAACGACTGCAGAAAAGCACTACATGACTATTTAAGCGGAGAGCCTTTCAAAGATTATCAGAAGAGCATGTATTTTGACCGTTTCCTGCAGTGGAAGATGGTTGAAAGAAACCCAGTCACGAGGAACACATTTCGAGAATACCGGGTTTTGGGAAAGGGAGGCTTTGGGGAGGTATGTGCGTGCCAGGCTCGGGCATCAGGCAAAATGTACGCCTGTAAGAAACTGGAAAAGAAACGCATCAAGAAGCAGAAGGCAGAAATTTTGGCTCTCAATGAGAAGCAAATCCTGGAGAAAATTAACAGCAGATTTGTGGTCAGCTTAGCTTATGCGTACGAGACCAAGGAAGCTCTTTGTCTGGTGCTGACACTAATGAATGGAGGAGATCTGAAGTTTCACATATATAAGATGGGCCTTCCAGGACTTAGCAAGGACAGGGTGCAGTTTTATGCAGCTCAGGTCCTTTGTGGCCTGGATCACCTTCACCAAAACAATGTTATTTACAGGGATTTAAAGCCTGAAAACATCCTCTTGGATGATAACGggcACATACGCATATCTGACCTAGGCTTGTCAGTAATCGTAAAAGAAGGAGAGCTTGTTTGTGGCAGAGTGGGAACGGCTGGATACATGGCTCCAGAGGTCATCAGTGACAAGTACTACGATTTCAGTGCTGACTGGTGGGGACTCGGCTGTCTCATCTACGAGATGACCGCAGCGACTCTTCCGTTCCGCGAGCGCAATGAGCGGCTGCACCGGAAAGAGCTCGAGAAAAGAGTGCTGGAGACCGAAGAGCACTACGGGGTCAGGTTCACAGGGGACACGAAAGACATCTGCCAAGCGCTCTTGGCCAAAAACCCAGAGGAAAGACTGGGATGCGGGGAAGGTGGTGCATCCGACATAAAAGATCATGTGTTCTTCAAGGACATCAACTTCAGGCAGTTAGAGGCTGGGATGCTGACGCCCCCTTTTGTGCCAAATCCAAAAGCCGTGTACTGCCAAGACGTTGTGGATATTGACCAATTCTCCACAGTGAAGGGAGTCAACCTTGATGTGACAGATGAAGACTTTTACACCAAGTTCAACACAGGCAGTATTGCCATCCCATGGCAAAATGAGATGATTGAGATGGAGTGCTTCAAGGATTTGAACGTATTCGGCCCCAAAGGCAAGAAGACACCAGATCTTGATCGTACAATTCAGGTTGGCCAGAGCCCCAAATCTCTCAATAAGAGCATGCGCCAACCACAGTCAAGTACCAGACACAGGCTGCTTGGTAAAATCTTCAAAAGACatCATCGTGATGAGCCCACAGAGCAGAAGAGCAGGTCATCAAGGAAGACTTCAGATGAGCTTCGAATGAACTTATTAGACTCTACATATGATGTCTTGTAAATACATACAGTgtctataaatagataaagttTCTACAGAGATGTAATAAAAGTTTGTGTAGCTGAAGAGACTTGTGTCTAGTTAAAAGACTAGGATTTAAACTAGCAGGCTTGGTGCTGACATTTTATGGATCATTGTCACAGTGTGAAGGAGTGAGTATGTGCCTTACTTTATGATTACTTTGACATTTTTTCATACTGTTCTCATTTGTTTTATACTGTTACGTCTTATCTAAATATATGACTGAAAATCAGTGAAA

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312835 lncRNA upstream 15286 5667582 ~ 5726945 (+) True G264009
TU312825 lncRNA upstream 37400 5702843 ~ 5704831 (+) True G264002
TU312815 lncRNA upstream 168951 5572964 ~ 5573280 (+) True G263993
TU312774 lncRNA upstream 536812 5204995 ~ 5205419 (+) True G263953
TU312598 lncRNA upstream 716723 5023275 ~ 5025508 (+) True G263801
TU312899 lncRNA downstream 163212 5922310 ~ 5926306 (+) True G264056
TU313350 lncRNA downstream 415216 6174314 ~ 6174692 (+) True G264424
TU313337 lncRNA downstream 434976 6194074 ~ 6194681 (+) False LOC113544903
TU313352 lncRNA downstream 435830 6194928 ~ 6195142 (+) True G264426
TU313353 lncRNA downstream 448892 6207990 ~ 6209011 (+) True G264427
XM_034312438.1 mRNA upstream 19525 5717115 ~ 5722706 (+) True setd9
XM_034312437.1 mRNA upstream 19525 5717993 ~ 5722706 (+) False setd9
XM_026943849.2 mRNA upstream 19525 5718214 ~ 5722706 (+) False setd9
XM_034312602.1 mRNA upstream 41053 5664084 ~ 5701178 (+) True LOC113544765
XM_034312603.1 mRNA upstream 41053 5664084 ~ 5701178 (+) False LOC113544765
XM_026943924.2 mRNA downstream 17638 5776736 ~ 5781428 (+) True pnx
XM_026943960.2 mRNA downstream 24870 5783968 ~ 5796488 (+) True aebp1
XM_034312327.1 mRNA downstream 38043 5797141 ~ 5806497 (+) True ykt6
XM_026943749.2 mRNA downstream 38043 5797141 ~ 5806497 (+) False ykt6
XM_026943748.2 mRNA downstream 38043 5797141 ~ 5806497 (+) False ykt6
TU312620 other upstream 661614 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 2924973 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 3394846 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 4322742 1414504 ~ 1419489 (+) False ponzr2
TU313203 other downstream 249702 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 1307773 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 1356962 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 1609382 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 1609464 7368562 ~ 7368633 (+) True trnam-cau_30

Expression Profile