RNA id: XM_026943670.2


Basic Information

Item Value
RNA id XM_026943670.2
length 1158
RNA type mRNA
GC content 0.39
exon number 6
gene id wu:fb59d01
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 5652719 ~ 5660142 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTGATAAAGGAGTCTAAAGGGCATCATTTGGACAGAGGTTCAGAAATTCAGGATATAACAGTACTCTCTGGTGCACAAAGAGGAACCAATTGCTTGAATCTTGGATACAAAATGAATTCTAGACTTTCTTTTGAGTTTTTCTTCATGGGGATCATGTGTGCAGGTGCACTGGGATTAAATTCAGATTGCACTGAAATGAAGAACGACGGTACTGGACAAGAAAGTGTATTGCAGTTCCACTACGACCAGAACGTCAAACTTTGCTTCCCTTTCTTCTACAAAGGAGAGGGAGGCAACGGCAACCGGTTCGCCACTGAACAGCAGTGCCTGTCCAGTTGCTCCTTAGAGTATAATGATCTCTATCCAGAAGGAGATGCAGTGTGTGCTTTAAAGATGAACCCAGGCAGCTGTTTTGCCCGACAGTTAAGGTATTACTACGACAGCGAGGAGAAAGCCTGCCGCCTGTTTCTTTATGGAGGCTGTCAAGGAAATGGCAACCGGTTTGAGACTAAAGAAGATTGTGAAAGCATGTGTCTAGCAAGGTCTGGAAGGACGTTCGGATCAGCTCCTAACCCTGATGAGCAGAATGTGGATGTGGGTTTGATTGTGGGCGTTCTGGGTGGTGTTGTGTTTGCCGTAGCAATAGTTGCTACTGTTGTACTATTTGTAGTCCAGAGGAAAGCGAAACATGCTAACATGAAGAAAGTGCCCACGACTGATGTCGAGATGAGATAAGCTAGCTAAACAGAAGGCcagagctttgtgtgtgtgtatgtgtgtgttcttttgtaTGACCTTTTTATTATCCAACTAGATGCATCATGAGAAATATATCAATCTTAACTGTTCATTATGTCATTTATGCTGGTGTATGCTTAGAATTtagtaagtaaaataaataaataattaacagtaataaaaaaagttgCATTCATATACAACATATGAGATAAATTATTCAGAAGGAAAATTTGCCTAGCATTGGATTTTTAATTTCCTCTAATTTTCCTTTTGCATTAGAAATAGATGTAAGATAGATTTAACTGCTGCAATATGTTGTATTGTTCAGTGATGGAGTTTTGTATGATGTAATAGCTTTCAAATAAGAGTTAATAAGGTAATACTGTCTTACCTCTAAATAAAGTGTGAGTACataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312815 lncRNA upstream 79439 5572964 ~ 5573280 (+) True G263993
TU312774 lncRNA upstream 447300 5204995 ~ 5205419 (+) True G263953
TU312598 lncRNA upstream 627211 5023275 ~ 5025508 (+) True G263801
TU312488 lncRNA upstream 765918 4885346 ~ 4886801 (+) True G263716
TU312487 lncRNA upstream 767992 4883327 ~ 4884727 (+) True G263715
TU312835 lncRNA downstream 7440 5667582 ~ 5726945 (+) True G264009
TU312825 lncRNA downstream 42701 5702843 ~ 5704831 (+) True G264002
TU312899 lncRNA downstream 262168 5922310 ~ 5926306 (+) True G264056
TU313350 lncRNA downstream 514172 6174314 ~ 6174692 (+) True G264424
TU313337 lncRNA downstream 533932 6194074 ~ 6194681 (+) False LOC113544903
XM_026943897.2 mRNA upstream 3265 5645871 ~ 5649454 (+) True nxnl2
XM_026943935.2 mRNA upstream 13138 5627430 ~ 5639581 (+) False LOC113544883
XM_034312417.1 mRNA upstream 13138 5627787 ~ 5639581 (+) False LOC113544883
XM_026943936.2 mRNA upstream 13138 5627850 ~ 5639581 (+) True LOC113544883
XM_034312414.1 mRNA upstream 26463 5613981 ~ 5626256 (+) False zmp:0000001301
XM_034312602.1 mRNA downstream 3942 5664084 ~ 5701178 (+) True LOC113544765
XM_034312603.1 mRNA downstream 3942 5664084 ~ 5701178 (+) False LOC113544765
XM_034312438.1 mRNA downstream 56973 5717115 ~ 5722706 (+) True setd9
XM_034312437.1 mRNA downstream 57851 5717993 ~ 5722706 (+) False setd9
XM_026943849.2 mRNA downstream 58072 5718214 ~ 5722706 (+) False setd9
TU312620 other upstream 572102 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 2835461 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 3305334 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 4233230 1414504 ~ 1419489 (+) False ponzr2
TU313203 other downstream 348658 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 1406729 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 1455918 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 1708338 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 1708420 7368562 ~ 7368633 (+) True trnam-cau_30

Expression Profile