RNA id: XM_026943681.2


Basic Information

Item Value
RNA id XM_026943681.2
length 5816
RNA type mRNA
GC content 0.40
exon number 3
gene id ankrd34ba
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7318652 ~ 7338448 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggacGTGTTCCTGCCTCAGACTCAGTGTTCCCTGGACaggatccagatccactgccaccctgTCGAGGATAAAGTGGATACTGAAACTCTCCTGTGTGTGAGTAATCTCCACATTGTCACTCAGATCTGACCAACGTCACACCTGCTATCTACGCACCCACTCTTGCATTAACTCGACAGTCAGACAACCAGCCTGGCCAACTGGCATTAACACAACTAATAGAGCATCAACACGACAACATTTCTTCACAAGATTTCAGGGCTTTGCATTGGCAATACTATTGTCTGCTGGCAGATgtgaaaaacagcaaaagaagCAAGGATGAATGGTGTGCAGAGcgttcacacagacagtaactctcTGCTCAAAGCAGTCTATCTGGGCCGTCTCCGCCTGACACGTCTCCTCCTAGAGGGCGGGGCTTACATAAATGAGAGCAATGAGCATGGGGAGACACCCCTGATGATTGCCTGTAAAAGCAGATACTCTGACACCCAGGGGGTTCCAAAGGCAAAGATGGTGGGATATCTTCTGGAGAGTGGTGCTGACCCAAACATACAGGACAAGAGTGGCAAGACTGCTCTGATGCATGCCTGCCTAGAGCAAGCAGGACCTGAGGTGGTGTCCCTACTCCTGGATAGTGGGGCTGATCCCTGTCTGGAGGACCACATAGGCTCCTCTGCTCTGATCCATGCCATTAATTCTAGTGATGAGGAAACATTGAAGCTGCTAATGGATGCTTTCAAGGCCAAAGGTAAAGaggtcatcatcatcaccacagaCAGACTTGTCTGCGGAAGACAGATGGCCAAACAGAATCTTAACGTTCCTTCACTGCCAGAACTAGACCGGTGGGATAAGTTGCATTCCTCCTCGATACCCTGTGCTTCTCCTTCTGAGATTCACCTCAGCACTTCGCCGCAGGAGACACTTTCCTCCAGCCTCTCAGAGCATATGTTTTCTTTCCAGGACCTGCAGACCATGGCCAACTCTCAGACAATCCCTCCCTCACACCAGCCACCTTTGGTAAACAGGAGACTGAACAAAGTCCACCATCTGCAGAGACTACACTCAGAACCATGGCTGAAGATCCCCCAGTCCTTTCTATCACAACAACAAGCCAAAGGTAACTCTCAAATGGAAGAACTTCCTGACATAACACCTGAGGAAGAACTTGCTTTCAGCATTGACAGACGACTGGCTTTTGACCCTCCTCTTTCATGTCAGGTCAGCGCTGACCTCAAAGAAGCAACTAACCAGTCTGAGCATcaagaaaacaacacaaataataatgGAAATTTAAGACCAGAGGGATCACTGTCTCACAACATGTCCTTCAATGGTTTATCTTCACTGTACTCTCTCTCCCATCCAGATCTTCACTCCAAAAGCAGTGAATACTTACCATCAGAGAATGATTCAGAAAAGTTTCTCCCTAACCTGGCAGTGTCCAGTCTCATCAACATCATCCAGCGTCGAAAGCTTGGAATGGACCATTACAGCTCCGATTCACAGCTTTCAGTGTCAGGCAACTCCccagcagaaggaaaaaaacagcttgaCAATAGGCAACTACTCGCTTCACGATCATCCACGTTGATAAGCTCACAAGAGTCCACTGATGGCACTTTATTGGGAAATATACACAAGAGGCACCCAACCAACCTAGAGAGGAGGGGATCAGGGGCTCTTCTCACAGATCTACCTTTCAACCCTCGACAAGGCTTTCTACCACCACTGAATCATCATGCCTCAATCCCACAAATTACTGGAGCAAGCAGCTCTAGTGCTATCTGCTCCAGCAACAAGCCAACATGTGGTTTGGCGACAGGGATAAGGCAATATTTCCCCTCAGCTCCTGCTGGCTTACCAAAGGATCTCAAGACCAGAAGAATGCTGATGAGAAGGCACTCCATGCAGCCTGAACAAATCAAACAGCTAGATGATTTTAAGGAGATCTTTGGTTAATGATGTTGGAAATGCAGTGTATTGGGTAAATAGACCATATACATGAAAATATCCTAAAGGTTCAGgtatttgaattttttcaatttatGAACAGTACTAAGGGATTATAGTAAATTggggtgtgtgtggaggaggtgAAGTTTGTAGGAGGTTCATTTCCACCACACATTTAAGATGCTTTAATATACGTAAGATAGggcatttcatttttcattttcaacattCAAAAGTGAATTCCTGTCTATATACTTCTGGCTGTTAAATGTATGTAACATATATTTCTTGAAAATTgctcagaaaaatgtttgtttacatgtttaagTATTAATCAATACACAACTCAGGGTAAATTTCAGTTTAAATCTTGGATAAAGTGGGGCTAACATAAAATGTGACAGTGGTCCACTaactatacacaatatacaagGAGCTGACAGCTACTGTAACTGACATTAACTGGGTTTTGTCAATCAAATGAATTTGCGCTTGCATGCTCTTTGATTCTTCAAGCAaacaatgattatatatttatgcaccctttaaaaaattcttaaagGGTTCCTTGGATAGCTAAGAGTTCTTGCTCAAGGGTTCTCACTCAAAGTCTTGATACAGTACAATTACTCACACCCACCATGGAGCACATGGGGTGCAGTGAAGCAGCATTCAATCTGTAATATATGGCAAAGTTAGACAGTGAGCCAAGGACGTGGGAAGTGACTTTCAGGAGTTTCAAGCACAGACTTTCAGGATTCCTTAAACTACAGTTTCAACTgctaaaataatgataataataataataataataataataataataataatatagataagcaaataaagaaataaacaaactttaaatGGAGTATTTTTAGCAGTTTTTGAGTTTGTATGTCAGAGTGCAAGTTTATCTTTGGAGTGCTACCATTGACTTAAggtaagagtttttttttttttcttccaagtTCTGCCATCATGCGGTGTTCTCCTGTTTGTTTAGGCTGCTTATGTTTCTGCAagatgtgtgtatttatttatagctttaAAGTTTAATAGTCCTGCATGTTCattgcacttttttcttttaatttataatattgttatatatcaTTGTACTCAACATACATcctctgttaaaagaaaaattatttgacTATCATTTGGTTGTAACATAATAGAACGTGTCACATGTATactgcttaaaattccagcatTCCCGATTTAAAATGCCTTCCTGCGTCCCTGCAGTGAGCTCAATGTTGCTGTACCACAAAAAATTTAAGTAAAAGTGATCTTAGTGTCACCTAGGACGTAGCCATAACATGCAATGAATTTAATGGAATAAGGTGCCTCTTGCCTGTCCAATCACTTCCTTTACCAATGGCCTAACATGTCCATAGATAGCAGAACCCCTAAATGGTGGTCCACAAAGAACACAAAAAGCAGTTCAGTTAACTGCGAGCTGGTGGTTAGACACAGGCTGGCCTGGGCAAATTCTCGTCTGCAAGAGCGATTTAATATGCTATCttgccaatacttttggcagAAATGAACTCCAGTCCCTACAGCAGATACTGCATGCTGCTTGATAAGATGTGCAATTGTCAACATATCAGGCCATTGGTGATGGCCAGGAAGTGAAAGGCACTTTAACTATGCATCATCCATTGGTTCAAATGGCAATATGCATAAACTGCTTAGCACCATGTCCTAATCTCCCTGTAGGACCATTATTTCACATTTGGAGACATTCTGTGCCCTGAGACATTTTGGAGTTTGGAGACATTATGTGCCCTCTGGAAATGTTCTGACCAGTTTTATGCACTCCTAATGGCCATCTGTCCACCAGAAAACGCTGCCATGTGCATCTTAATGTAGACCCAGAAAGAGACACTTCTAGCTGACACTACCATCTGGCTGCAGAAAAACATAATTTGTGGCACAAGATAAGGAGTTCCTGCCCAGTGATTTACCGTAGTGAAAAAACTTTATACTTACTTTATACTGCCTTTTTGAACATGCCAGTGTACTGGGGTCACTACTAGGAGCCAGAGCTATAAtttcaaggtgtgtgtggtctgaTATGGCACAGTGACTTAGGGTACTTGGGAATGCAGGTCTGGTCTGATGGGTAGTAAGCAAGGTGAGCTtgacacaaacattaacaacaGACAGAACCATAGTCTGTTCTGCCAGAAGTACAGCTCTTCTGTATCTGCCATTGCAGTCAGTATCATGTCTTCATTCTAACATAGTACAGGTGCTCATGCTTCCTTTTCCAAGGAACTGAGCAAATGCACCTATTCCACATTTCCGGTTCCTGCTGTGACAATGCAAAAAAGGTTACCTTTTTCATTCCTTGCTAAACAGCATTAGGATAATTAATGGTCAGCAGTATCCAGAAAGATTTCAAAGCCCTGTATGTAATTACTGAACATACTTCAGTCCCATTGATCATTGTCCATCATGCATCAGGGCCTGGCAGAATAAAAGCTCGCAACCCTACCCTGAATGTTCAGCAGTTGGGAATGTTCAACAATTCTCAAGTCATGAGTATATGGAtttataaaatgatgaaattagttACTCTGTGATCACAGCACATGATTTTTGCATGACAGAATTTGCTTCCTAATCCCAGTTCAAAGGACTCTATAATGTGGGGTTACATGAAGGACAAGATAATCTCctaataaatcagaaatgtgcatTGCTTGGGGTCCATAGCTTGGACAAAGAGCAAAAATAAGAGCTAAGAGAGCAAATGCACCAATGCAGCATCACTGATAAAGTTAAGGTCTACAAAAGAGTTCTACTGCTGTGAACatttatagtgtatatttagtatattttgaGTGAACCATATAAGAATTAATTGTAACAATAACCTCACTTAAAGTAATCAGGAGTATTGTCAAATTTTTGTCTTTGCAATTACGTATAgatctcagtgtttcagtacaGTAGTTTACTGTAGTACATGGTCCTGATAGGTCTGACTAAAAGCTCATGGAGTTCTTCATTTTCAAATGAGAACCTTGGTATAACATATACTTGTTGAATAATAAGCTCAATTGTTCTGACtaatattttgctttttgttattttgctgtTCAATGTGTAAACCAACCATGGTCAATCTGAAATAATTCATCAgaaactgtggaaaaaaatgattttctgtaatattttgatGCACTTCTATCACTTTCATCAACCCATGAACACATTCAGACATAAGTGACTTTTTCTGTGAGTATTGCCTGCTTTCTCTCAAATAAATGTTTGCAAATGCTGCTTTGAGATCTACCTACCTGCAGACCACAGTTCCAACTCTACACTTAAACATGTTCATATTATACAGATTCTCTTGAGAGCCTTTATGAGTTAGCTCAGTTGATGGAACAAAATTGCACAGTGGACTGTTTTGGATACCAGTAATATAAAtatctcacaaacacactgcactatGAAATTAACTAGATCCATCTAGGTGAATGTGCACTACAACACAAAAAACTTTgcagtatttatttcattttaaatattggtACATACACGATCAATAGCTTTATTTAACCAATTTAAATATATCCACAAGCAAGGCCacaaaaaatataagaaatgaaAATCTCATGATATTCTATAACTGGTATaggatattaaaatatacactcaTATATTTTAATCTCAGTGAAAAAGGTGAGCACAAGCAGTACCTGTCTACAGTTAGGACACACcagattgaattgaattattcattatcataaagacagaaaaagacaaagaatgaAGCTGTTGTTGATGAAAAGTTGGCTGAGAGAATGCTGTTTGAAAAGATGTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313963 lncRNA upstream 69574 7248185 ~ 7249078 (+) True G264986
TU313953 lncRNA upstream 152579 7165128 ~ 7166073 (+) True G264976
TU313947 lncRNA upstream 161085 7154274 ~ 7157567 (+) True G264970
TU313949 lncRNA upstream 164788 7152799 ~ 7153864 (+) True G264972
TU313921 lncRNA upstream 227690 7089667 ~ 7090962 (+) True G264944
TU314033 lncRNA downstream 30041 7368489 ~ 7369482 (+) True G265039
TU314005 lncRNA downstream 78786 7417234 ~ 7417633 (+) True G265023
TU314046 lncRNA downstream 81562 7420010 ~ 7420244 (+) True G265052
TU314047 lncRNA downstream 84322 7422770 ~ 7423011 (+) True G265053
XR_004579781.1 lncRNA downstream 92914 7431362 ~ 7432343 (+) True LOC117599325
XM_026943630.2 mRNA upstream 47805 7267501 ~ 7270847 (+) True ube2l3a
XM_026943736.2 mRNA upstream 75372 7199049 ~ 7243280 (+) True pi4kaa
XM_026943738.2 mRNA upstream 75372 7199049 ~ 7243280 (+) False pi4kaa
XM_026943737.2 mRNA upstream 76634 7199048 ~ 7242018 (+) False pi4kaa
XM_026943739.2 mRNA upstream 76634 7199048 ~ 7242018 (+) False pi4kaa
XM_034312852.1 mRNA downstream 32617 7371065 ~ 7381988 (+) True marveld2a
XM_034312853.1 mRNA downstream 32628 7371076 ~ 7381988 (+) False marveld2a
XM_034312854.1 mRNA downstream 32642 7371090 ~ 7381988 (+) False marveld2a
XM_034312855.1 mRNA downstream 32668 7371116 ~ 7381988 (+) False marveld2a
XM_026943711.2 mRNA downstream 45834 7384282 ~ 7393480 (+) True oclna
TU313944 other upstream 200036 7116060 ~ 7118616 (+) False ddx55
TU313925 other upstream 236211 7066871 ~ 7082441 (+) True G264948
TU313203 other upstream 1306750 6008800 ~ 6011902 (+) True G264336
TU312620 other upstream 2238035 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 4501394 2795548 ~ 2817258 (+) False pcp4a
trnar-ccu_6 other downstream 30032 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 30114 7368562 ~ 7368633 (+) True trnam-cau_30
trnar-ccu_7 other downstream 30815 7369263 ~ 7369335 (+) True trnar-ccu_7
trnam-cau_31 other downstream 30897 7369345 ~ 7369416 (+) True trnam-cau_31
trnam-cau_32 other downstream 31359 7369807 ~ 7369878 (+) True trnam-cau_32

Expression Profile