RNA id: XM_026943713.2


Basic Information

Item Value
RNA id XM_026943713.2
length 3085
RNA type mRNA
GC content 0.50
exon number 13
gene id pdlim5b
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 4432696 ~ 4493792 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttgagaagGAAGAAGCGGAAGTCCAAATTGTCGCCTGGGTTCTGAAGCTCGTCTGAAGTGTCGACGGTTTCAGTTCCACGCGAGCGCGCGAGCGGAGGCGGTAGTGCTTTCTCCTGTTTGCAGGTTTTAAGTTTGCTGAAGTTTGGAAGTGCTTgatccttcacacacacatacacacaccctgacaaCCGGACCACCATGAGCAGCAATTACAGCGTGTCCCTGATCGGACCCTCGCCCTGGGGCTTCAGACTGCAGGGGGGCAAAGACTTCAGCATGCCTCTCACCATCTCCAGAttgACGGATGGAGGAAAAGCGGCCAAAGCGAAGATCAGCATAGGAGATATCGTGCTGTCCATCGACGGCATCGCCACAAACACCATGACTCACCTGGAGGCTCAGAACAAGATCAAAGCCTGCACAGGCAATTTGAGCCTCACCCTGCAGAGAGCGTCCAGCGTTCCCAAAGGCGATGTACCCAAGGATGAATCACCAGAGATCATTAAACCCGTGCCCATCAGCCACCCACCTGCTCCCGCCCCTAGTGCCAGCCCCACCAACCCTCCCCCAAGTAGCGCATACAACAAGACGGCCCGCCCATTCGGCGCATCTTCTAATTTTAGAGCAGTCAGCCCGACCTCCACTCCTGCAGCACCCAAAGCCTCCATCCCTTCTGCCTCCTCAGCTTTCACCCCCGCTGCTCCCTCCCAGCAACCTCCACCACAACCCGCACAAGGCCCACAACCTCCCTTCCCACTGGCCAGTAGCTCCGCCTCCCGCACAGTCTCCTCTCTTAACCCTGCCCACAAACCTGGCTCCGCTTACTCCCCCTTCTCtcactcctcttcctcctcatcctctggCTCGTCTTCGCCAGCCAGAGTGACAGGCCCTGCTCCCTCATCTGCTCCCACTGTGCCACAGCCTTCGGTCTATAACACGCCATTCAACCTGTACTCCAATGAGAACGCATGTGAGGTGGCTATGGGTCAGAGGCGTGGCCTACTGGAGCAACAAGGTGGAGTGGAGCATCAGAATGGAGTTCCCAGGAAGCCCATCCCAGATACGGAGCTGGTGGTGAACCACGGCTCTCACCTGAGCGACGCCAGTAAAAAGCGTCTGATCGAGGACACGGAGGACTGGCGCCCACGCACTGGAACCTCTCAGTCCCGCTCCTTCCGCATCCTGGCACAGATCACGGGTACAGAGAACGaACAAGCCCACGAGAGCAGTCCCGGAAAGAATGAGGCTGTAGAGGACGTCCATGCGAACACTCACGCCACGTCCATGGTTAAAACCATGACCAAAGTGCCACACACTGGGAATGGAGTCCCTCCACCTACCACTGTGACTACCAAGAGCTGGCAGTCTGGAAACACTGCAGGACTTCCTAAAGCAGGTGTGCCAGCGGTGCATACAGGGCGGGTGACTGGCGGTGTTCCGAAGGGTCCTGACCGCCCTGCGCCCCAGCCTCACCCCAAAGACCAAGATTCACTGGTGCAGAGAGCGGAACACATCCCTGCTGGAACCCGCACTCCCATGTGTGGTCACTGCAACATGGTTATCAGGGGTCCGTTCCTGGTGGCTATGGGGAAGTCGTGGCACCCGGAGGAGTTTAACTGCGCTCACTGCCGCAGCTCTCTGGCCGAGGTGGGCTTCGTGGAGGAGCGCGGCGCTGTTTACTGCGAGCACTGCTACGAGCAGTTCTTCGCCCCCACCTGCTGCCGTTGCCAGCAGAAGATCCTCGGGGAAGTCATCAATGCCCTGAAGCAAACCTGGCATGTGTATTGCTTCCTGTGCACCTCCTGCCAGCAGCCCATTCGCAACAACACCTTCCACCTCGAGGATGGACAGCCCTACTGCGAGAGAGACTATTACAATCTTTTCGGTACCAGTTGCCATGGCTGTGACTTCCCCATTGAGGCAGGGGACAAATTTCTGGAGGCTCTGGGCTTCACCTGGCATGATACCTGCTTCGTGTGTTCGGTGTGCAGCACCAGTCTAGAGGGTCAGGCTTTCTTCTCCAAAAAAGACAAGCCGCTGTGCAAGAAGCACGCTCACACTGTCAAAATCTGATCACAAGAAAAGCGGACTATgggatgaattttttttttttgttacaaaaaaGCTCAATCAGCttttagtgtttattatgtGAGAGTAATTTTTAAGGTATTGATAAAGACGTTACTGGGAAAAGTGGTTAGTTCTCTGATACGCTGATCGTTGGAGTACATACCGTACGTCGCTAGggtgtatgttttgtgtgtttcccTTTGTGGAGCTCTATGAAATAAAGTATTGATGAGAATCATGATGCTTTCAAAGACAGTAATATATAATTTGCTATGCTTTATATATTATCTGTCTTCTGCAATGGACATACTGATGagagctgtttgttttttttttttgttcatgtcattttaaatgtactgtTCTCATGgtgttttttcatctttttctatTGCTAATACATaatgatgtgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaagtagTTTGTAGTCAACATGACAGAGTGAGGTCAGATTGTTTTTGTTAAGAAATCTGAACTTCACAGAAACTAACGTGTCCTGGACCTTTTCTCCTAGGCTTCAATAATAAAAGATGTTTTGTCCGATTGCCTCTTAGCATGTAGGTGTTGATTCAGAGCTACACGTTTGATCATCGCTCACTCCTCCATCTCGCTTCTGCTACTCCAGGCTCTGGAGCATTTTCCCATGTATATTTATTGATGCATTTACGGGGTTCCTAATGGTTTCACACATATTTCACACTTCCGCTGAGTGTCAAGAGGAAAATTGGTTTAGCAGTTAACAGTGATGTTTTGTGTAAGGTGCATTTTGGAGCTGTGTGTTGAATCAGAAACTGAAATCCAGTGTACGGCGCTTGTCAGTGTATTACTTTAGCTACAATGAGCACATAATAATTCTTAATGTGCACTCTGGTGTTATGaaatgatctgtttttttttctccatctgttATGCAAAAGTTTGTCTCTTCCCAACTATGAAACGgggaaaataaacactgttctTAACAAGC

Function

GO: NA

KEGG:

id description
K19867 PDLIM5_6_7; PDZ and LIM domain protein 5/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312167 lncRNA upstream 146490 4285977 ~ 4286206 (+) True G263439
TU311683 lncRNA upstream 246442 4185759 ~ 4186254 (+) True G263025
TU311586 lncRNA upstream 640189 3790141 ~ 3792507 (+) True G262946
TU311526 lncRNA upstream 733119 3695051 ~ 3699577 (+) True G262894
TU311498 lncRNA upstream 765253 3665524 ~ 3667443 (+) True G262872
TU312320 lncRNA downstream 4407 4498199 ~ 4499244 (+) True G263566
TU312366 lncRNA downstream 124274 4618066 ~ 4621490 (+) True G263612
TU312395 lncRNA downstream 227754 4721546 ~ 4775709 (+) True G263634
TU312498 lncRNA downstream 382453 4876245 ~ 4876505 (+) True G263724
TU312487 lncRNA downstream 389535 4883327 ~ 4884727 (+) True G263715
XM_034312718.1 mRNA upstream 6578 4415574 ~ 4426118 (+) True opn4xa
XM_034312719.1 mRNA upstream 6578 4415574 ~ 4426118 (+) False opn4xa
XM_034312720.1 mRNA upstream 6578 4415574 ~ 4426118 (+) False opn4xa
XM_026944037.2 mRNA upstream 74548 4319943 ~ 4358148 (+) False LOC113544945
XM_034312940.1 mRNA upstream 74548 4320067 ~ 4358148 (+) True LOC113544945
XM_034312849.1 mRNA downstream 2680 4496472 ~ 4568363 (+) True bmpr1bb
XM_026943918.2 mRNA downstream 2680 4496472 ~ 4568363 (+) False bmpr1bb
XM_026943919.2 mRNA downstream 2680 4496472 ~ 4568363 (+) False bmpr1bb
XM_026943920.2 mRNA downstream 52984 4546776 ~ 4568363 (+) False bmpr1bb
XM_026943830.2 mRNA downstream 348289 4842081 ~ 4864137 (+) True glis3
TU311007 other upstream 1615438 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 2085311 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 3013207 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 3013261 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 3195564 1205991 ~ 1237132 (+) True G261503
TU312620 other downstream 584089 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 1515008 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 2573079 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 2622268 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 2874688 7368480 ~ 7368552 (+) True trnar-ccu_6

Expression Profile