RNA id: XM_026943742.2


Basic Information

Item Value
RNA id XM_026943742.2
length 4584
RNA type mRNA
GC content 0.52
exon number 15
gene id phf12a
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 4046277 ~ 4059813 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attatttttattccacCCGCATTTAAACAGGTCCCGCCTCCTGTTACAGGATTGGCTGGTGGTTTGCGCTGACCGATAGGTGGAATGAATGCAAGAATGAAGGtttagccaatcagagcgcagacGACCTGATCGTAGTAGCCAATCAACGCGAAGGAAGGCGGCGGTTTAGTCGGAATAcgggtggggaaaaaataacgCGCGAGCATCAGTGTTGTCGAGTTTGGATGCAACAGCGTTTATTCATGACAACAATGATCTCCGCCGTTATCCGGGACGCTTTCATGGAGTAAACGGGCGTTTTTAAAGCTCTGGTGTGCAGCTAAAGCTTTGTTTTTTGTCCCGGAGCTGATGTTTTGTTTGTCGCATCATGGACGGGGGCGATTTGGCGTCTTTATCCCGCATCTGTGCTCGCTACGATCGGAGCAGGAGGAACAGGCGATACCCAGGCTAGGCCTCAGCTAGGCCAAACACTGCGGCTGGCggatttatttatacaaactGGCTTCTGCCGCCTGACACCCAGACAGCTGTTTTTGTAGCTGTTGCAGGGCAAATACATCTGTTTACTTGGAAGTTACTGTATTCTGGAAACCAGCGGTTGTTTTGTCTGATTGGGGCGTTAGAGGACTGTTAGCCCCGCTGCTATTTAAGATGGCTAAATAATCAGCTAGCATAACATTGGCATTGGAACGAATAGAGGAATATTTTAAACTCAACCCGCAGAGGATTGTTTACACGCCGCGTGTGTTTCTCTGAAAGGAGGCTCGTTTTTGGATATATAAAGATCCCAGACGTTATTTGTTTGCAAAGGTTACAGGACTTTAAACCCTCTCTTTACAGGATCCTTATAATCGGCTAGCTGGAGTAGCTTAGCCTTAGCCGATCTGACTGCTAAAGCTCAACTGGGTGAATGTGGGATAAAATGGAGACCCCGACTATAGTGTACGATCTGGACACCTCCGGCGGCCTTATGGAGCAAATCCAGACGCTGCTCGCGCCGCCGAAGTCGGAAGAAGGTGAGAAACGGAGCCGGAAGTTGGAGAGGAGCAGCAGGAGAGCAGGACGCGCGACCAACCACGACACCTGCGACAGCTGCCGAGAAGGAGGCGACCTGCTGTGCTGCGACCACTGTCCCGCCGCCTTCCACCTGCAGTGCTGTAACCCGCCACTGAGCAGGGAAATGCTCCCCCCTGGAGACTGGATGTGCCATCGCTGCACAGTTCGTAAGAAGAAGCGAGAGCAGAAGAAAGAGCAAATCAACGGCCTCATGCAGGCCAAGCAGACTCCGTCCCCTGCCGCCGAGCTGGACCTGGGCACCCTCCGTCTGGATCCCACCGCTGCTGGCACGGGCCTGCGGGCTGCCGTGGCTCAGGTGCGACTCCTGGAGAGGAGACCGAGCAGCCGTCCGGCCACACCCACCTCCAACGCCTCCTCCACAGACACGCCCACGCCCTCGGAGCACAACGACGTGGAGGAGGACCTGTTGGACGTGGAGGACGAGGCGCAGGGCTCAGAGCCTGAGAGCGGGCCATCTACGCTCAAGAGGCCCTTTGACTTGCTGATTGCCGCCGCCATGCAGAGGAACCCCACGCAGTTCCAGCTACCCAACGACCTCACCTGCACTACCGCACTTCCAGGAACCAGTAAAAAGAGGAGGAAAGAGGAAACGACAGGGAAAAACGTGAAGCGGCCGCAACACGAGCTGGACCACTATGGGCTCGTCCCACTGCCCGTCAAAGTGTGCTACACCTGCAGCAGGAGCTGTAGGCTGGCTCCGTTGATCCAGTGCGATTATTGCCCCCTCTTGTTCCACATGGACTGCCTGGACCCTCCGCTCACAGCCATGCCCACGGGCAGATGGATGTGTCCCAATCATATTGAGCACTTGGTGCTGAACCAGCGCAACCTGACTCTTAGCAACCGCTGCCAGCTGTTTGACCGGTTTCAGGACCGCATATCCCAGCATGCCGTGAAAGTGGACTTCCTGCAGCGAATACACCGTCAGCACCCTCCTACGCGAAGAGCACCTCATAGTCACGCCAAGAGAACGGTGAAGGTCCCAGATGCTATCAAGTCACAGTACCAGAACCCACCTGCGATGATGCTGCCCGCTGGAATCCGGGACGGTGAGCTCATCTGCTCAGGTGCTTCTGAAGCCTCGCCATCCAACCACTTAAGCAGCAATGAAGAGCAACAACAGTGGCTCAGGGACGTGATCTCGCTCCAGTGTAGCATCATGCGCCATTTGTCTGCCAAGCAGACGTCATCCTCGCCATGCAACTCTTCGCAGGCGGAAAAGACGGACCTTAAGGACCCCGACTCCCTGAATTTGCATTCTTCCCACAGCATGGACACGACAGCCTCGGGGAAAACGCCAGAATCCCTCAGCCTTAACTCAGAGGAGCACAGAGTGTGCAGCTCCTGCGCTGAAAAACCCTGTCAGAACTGCGGCACCAGCAACGGTCCTGTAGAACGGCCGGCCCACACCAACGGCAAACTCGGGCAGGCGTGTTCCACTGCCCCTGAGGACTCGGATGCACCCCgttcacacactccctctgtcCTGGCCCTACCTAATCATGCCGGCCCTGCTCTCATAAAGACTGAAGACTTAAAGTCCTGTGCTGCTACAGAATCCCTTCCTTCTGCTTGTGTTAAATCGGAGCCCAGCCCCCCTCACGCTCAAAGGGCTTCCCCAAGGTTGCCATCCTCTCATGTGCCAGATACCAGTGCAAGCTGCCAGGTGTCTTCAGCGCCCTCCTCTGATGGGAAATGCAGCGAGGATGCCGTGGCACAAGGCAATGGGTCCGACCTGTTAAATCTGGGAGACTTGTCTAGCTGCTTAAGGAGCATGATGAAGGGAACTGGAGacaTAGAGCTGAACACGTTAGATGAGCGGTTCATCAAACTCCTGGCGTGGCAGCGGATCCAGCAGCTCTTCGAACCAAAAGCACTTCCTGTGCAGAGCGATGCAAAGTTACCTACTATCCCCTCCTTCACACAGCGAAGCCGGCACACTGAAGCGCAAAATAAGGATGTACAGGCCCGAGCGACATTTTATCCTCTATCTGGGAAGGGAGCAGCAGTCAGCATGTGCTACAGAAGCCTTTACATTGGAACTGGTGCTGACATGGACGTGTGCCTTATGAATTACGGCCACTGCAATTACGTATCGGGAAAACACGCCTGCATATTTTATGATGAGAATACAAAGCAGTACGAGTTGCTGAACTACAGTGAGCATGGGACAACGGTGGACAACGTGCTGTACTCCTGTGACTTCTCAGAGAAAACAGGGCCAAGTCCATCCAGTGGCCTGGTGTCCAAAGTGCAGAGCATCATCCGTCGCTGTAAAAAGAGGAAgcaggaagaggagaaggacGAGGACCATGGCAATGTTAGCGGAGTGATGAGCAGCCAAGCTGTGGACTCGCACCTCCGGCCGTGCGGCTGCAAAGCGAGCGGCTCCAGTCTCATAGGGGGCAGCGGTGCAGGGTGGGAGGGCACAGCGCTCCTCCACCACGGCAGCCACGTCAAGCTCGGCTGCCTGCAGTTCGTCTTCAGCATCACTGAATTCGCTAGcaagcagccgaaagaagaagaagaaggggcGAGCAGCATCGTGTGCAGCCCCATCCAGCAGGGGGAGCTGCTGACTAAACCCACTGCCCAGATCCACCAAGTGCCAGTGCTGCACCACAACCCTGTTCCTTAGCCCCGCCCACCTCAGGTGCCACCTGCGCCTCTTAACCAGCCTCGGAGCTTGGACTTGTACAAAACTACACGCTCTCtttcataattatttaattgttcATACGTTTGCATGAGGTgaagtctctctttttctccccccGTCTCTTTCAGAAGCTCCGATTTTGTGGGAGAGTTGCACATAAGgaacttttgtgtatgtgtaaatgCAAACGTCATGTTTTTAAAAGGGATCGCGTTCTTGAAATGGCACGAACCAACGATCAAGCGAGAAGTTTCCACTTGTAAAGAAATCAGAGCACGTTCTATTTTGTGCCAGTAACAATagtttttatataaacacttttttttttccataagaaAGAAccttttatttactcatttttatttaaatgttctgTATTTGCAAGTATAGTAACGTTCTGGTGTTCCTTTTTCGCTACCTTCACCGTAGCCTCTTTGCGATTCAGAtgtgtgctcacacacatgcGAATACGCTTACACGTTGTATATATGTCTATGTATCCGTATCCTTGTAATCCGTGTGAACAGTGGGGCAtccacacacaccaacaccgAAATGAAAGGAATCCATTGTATACAGATCATGATGAGGGAAGCAGTGGGTTCTGTGTACATAGAACTattctggcttttttttatatttgtacagTGCTTCATTTGGTTGATGTTCTGTAGCTATCAAAGTGTtaagtcctttttttttcttcgatACTGTAGTCATTATGTATATGTCTGTTTCAAAGAGATTTCATCAGAACAGTTTCACGTACTCTGTTCTTACAATTTTGACCAGTCTGTTAAACAATGTAAATATCTAAAGattttaaataacatgcttTAGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311586 lncRNA upstream 253770 3790141 ~ 3792507 (+) True G262946
TU311526 lncRNA upstream 346700 3695051 ~ 3699577 (+) True G262894
TU311498 lncRNA upstream 378834 3665524 ~ 3667443 (+) True G262872
XR_004579791.1 lncRNA upstream 409612 3634719 ~ 3636665 (+) False LOC113544951
TU311482 lncRNA upstream 410435 3633386 ~ 3635842 (+) False LOC113544951
TU311683 lncRNA downstream 125946 4185759 ~ 4186254 (+) True G263025
TU312167 lncRNA downstream 226164 4285977 ~ 4286206 (+) True G263439
TU312320 lncRNA downstream 438386 4498199 ~ 4499244 (+) True G263566
TU312366 lncRNA downstream 558253 4618066 ~ 4621490 (+) True G263612
TU312395 lncRNA downstream 661733 4721546 ~ 4775709 (+) True G263634
XM_034312481.1 mRNA upstream 5221 3975680 ~ 4041056 (+) False sez6a
XM_034312480.1 mRNA upstream 6493 3975680 ~ 4039784 (+) True sez6a
XM_034312483.1 mRNA upstream 6493 4006333 ~ 4039784 (+) False sez6a
XM_034312482.1 mRNA upstream 6493 4006349 ~ 4039784 (+) False sez6a
XM_034312479.1 mRNA upstream 154469 3831359 ~ 3891808 (+) True myo18aa
XM_026943743.2 mRNA downstream 6079 4065892 ~ 4068409 (+) True LOC113544790
XM_034312553.1 mRNA downstream 49795 4109608 ~ 4120030 (+) False plekhb1
XM_034312551.1 mRNA downstream 51532 4111345 ~ 4120030 (+) True plekhb1
XM_034312554.1 mRNA downstream 53705 4113518 ~ 4120030 (+) False plekhb1
XM_026943720.2 mRNA downstream 55480 4115293 ~ 4120030 (+) False plekhb1
TU311007 other upstream 1229019 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 1698892 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 2626788 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 2626842 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 2809145 1205991 ~ 1237132 (+) True G261503
TU312620 other downstream 1018068 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 1948987 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 3007058 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 3056247 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 3308667 7368480 ~ 7368552 (+) True trnar-ccu_6

Expression Profile