RNA id: XM_026943751.2


Basic Information

Item Value
RNA id XM_026943751.2
length 2543
RNA type mRNA
GC content 0.40
exon number 8
gene id ykt6
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 5797141 ~ 5806497 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGCGGGATAATAGGATCCAATCCGAAGGCTGGAATTTGTCTGAATACGGGTAGAGACAAATAACACACCCGGCTTTGCTAATAATGCTAGTTACGTGCTAATCTTTTTCTTGAGAAAACGAGCTGGAGGTACTGAGGAGCTAAGCAGCAGCCAGTAATCCAATTAAATGTCTGCTGATAACCCAAGCTGAATAAGAACCATGAAGCtctacagtttgtgtgtgttgtacaaaGGATCGAACAAGGCCAACCTTCTCAAAGCAGCCTATGATTTGTcatcatttagtttttttcagAGATCCAGTGTACAAGAGTTCATGACATTCACCAGCAGCCTGATAGTCGAGCGCTCCTCATTAGGAAGCCGTGCATCAGTCAAAGAGCAAGAATACCTGTGTCACGTGTACGTCCGGAACGACTGTCTCAGCGGAGTAGTGATTGCAGATAACGAGTACCCCTCCAGAGTGTGCTTCACTTTGCTCGATAAGGTGTTGGAGGAATTTGCCCGGGAGGTGAACAGCATAGACTGGCCCTCAGGCTCACCAGCTACTGTTCAGTATACCGCCTTAGACAGCTACCTGGCCAAGTATCAGAACCCGCGTGAAGCCGATGCCATGACTAAAGTGCAAGCTGAACTGGATGAAACCAAAATTATTTTGCACAACACAATGGAGTCACTTCTGGAAAGAGGAGAAAAGCTGGATGACTTGGTACAGAAATCAGAGCACCTGGGAAACCAATCAAAAGCCTTTTACAAAACGGCACGGAAGCAGAACTCTTGCTGTGAGGTGATGTGATGAAAGCATTGTGACGGATCAGACTCTCCTGGACCACCTTTTCTTtatctctgtcctctctcttatttctctctgtccctctcttggCCTGGGCTCAGATATAGAACAGACTCAGCAGTTCCAGAGACCTTATAGTGAGTGTTGAGGATAGAGAGAATccctaattattattttttttttttgtttgttcgtttgtttgttttctttccctctcagATGGGTTAGAGGGACTGATTTCCCAGACTACACCACACTTAACTGCACTGTAAGAGGGTTTGCTATTTCTTCCGTGCTCTGAGACAGTCCGCTCAGGGCCTGGTGTCCGCAGGGTTTAGGATGGAAAATGCACGGCGCAGAGAGAAGGTTAAGACATAAAGTCTCCATTGTGCCTTACTTTAAGTGGCTGTGCATTAAGTTAGACTGTTAGCCTTAATATTGAACATTTCAAGAGATGGGTTATAGtgggaaaaaatgttttacattttcttgtctTTTAAAACTGGAAAATGCATTGATCATGGGTGATGACCAGGTTTGAACTCTAATGTCTTATAGAGTGTATACTTTAAATTCTTTAcaaattgtgaaataaatgGAGTGCACTATGTCAGACTAGCTTTTGCTTTGCCTACATCCTTTGTTATCTTTGTACAATGTAAgcgattaattaaaaaaaaatatatatagttgtATTTTCACATTCCTAAGCATTCAAGTGTTAAAGGTAGTGATCAtgcttaggtttttttttttttgctttcttaatAGTCAAACGTCAAGTGTGGTCTCCTCTGAAATCAGTCCCTTACCCTCGAATGACatttaataacaatatataCAGTGTCTAGTTCTCTTATTTTCAGACAGAACTAACAAACGTGAACGTGTCTATACTTTAACTATCGGTGACACTCTACAATCAGTGTTGAGTCTAGAATCACATTGGATCTCTATAATGTTCGGATTCCTTTCTTTACTTTTGGCACAAGCTGTAGTTATAAAACTACTAAAACTATCGAATCCCCATCTCGGGTGGTTTTAATTCGCCGCATCCCGAAATGTTTGTTGTTTAGGACTTTTAAAGTTCCTAAAACTCCTctctgtgtttatgtatatCAGAGAAAGGTTTAAGACTATCAGATATCTGGAGTGCATAGTGTGGCTGATGTTCAAAAATGACACGTGTTGAAGTTTTGGGTTTATTTTGTGAACATTCTTGTGATTCCATGGcgtaaaaaaaattttcttagTGATCTGATGGTGTTTTACTTTATGCAGAGTTGTTGCTCAATCTGTGtggcttgtgtgtgtctctacGCAATGTAAGGGTTGCATTGTATAAATTAAAGTGTGTTTCCTTGTCAAAAATACGACAAGCTGCTCTGGAGGACCTTCTGAGGTGCCTTTTTTGGTAATTGCCAAATTCCTGCAGCTCATTCAGTCTTAATTTAAGATTGAATGGCACCATGttttgtgtagttgtgtataaAACTAACTTGGCAAAATATATTCCTCAGACATGTACATTAAAAGTGTTTATAGGCAAAATGTTGGGTAATATTAGGCAGTAAATATGCTGTAACATTTTTCTTCAGTTCAGACGCAGTTAATCCGCTTTGTATTGTAGTTTTTTCTCTTATTCCCATCTTAATGTGCTcactgtaaatgtataattaacaCTGCAGTTGTATCAAGTGAGAAACGTCTTTTCAATCTGTGAAAAGGAAATAACATCACATTGCTGAA

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312835 lncRNA upstream 70724 5667582 ~ 5726945 (+) True G264009
TU312825 lncRNA upstream 92838 5702843 ~ 5704831 (+) True G264002
TU312815 lncRNA upstream 224389 5572964 ~ 5573280 (+) True G263993
TU312774 lncRNA upstream 592250 5204995 ~ 5205419 (+) True G263953
TU312598 lncRNA upstream 772161 5023275 ~ 5025508 (+) True G263801
TU312899 lncRNA downstream 115813 5922310 ~ 5926306 (+) True G264056
TU313350 lncRNA downstream 367817 6174314 ~ 6174692 (+) True G264424
TU313337 lncRNA downstream 387577 6194074 ~ 6194681 (+) False LOC113544903
TU313352 lncRNA downstream 388431 6194928 ~ 6195142 (+) True G264426
TU313353 lncRNA downstream 401493 6207990 ~ 6209011 (+) True G264427
XM_026943960.2 mRNA upstream 1181 5783968 ~ 5796488 (+) True aebp1
XM_026943924.2 mRNA upstream 16241 5776736 ~ 5781428 (+) True pnx
XM_026943660.2 mRNA upstream 38571 5742231 ~ 5759098 (+) True grk5
XM_026943662.2 mRNA upstream 38571 5742231 ~ 5759098 (+) False grk5
XM_026943849.2 mRNA upstream 74963 5718214 ~ 5722706 (+) False setd9
XM_026944010.2 mRNA downstream 21627 5828124 ~ 5835525 (+) True ccar2
XM_026943799.2 mRNA downstream 30160 5836657 ~ 5842550 (+) True LOC113544817
XM_026944020.2 mRNA downstream 96608 5903105 ~ 5911029 (+) True pargl
XM_026943898.2 mRNA downstream 205494 6011991 ~ 6015837 (+) True mrps24
XM_026943637.2 mRNA downstream 224483 6030980 ~ 6038104 (+) True polm
TU312620 other upstream 717052 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 2980411 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 3450284 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 4378180 1414504 ~ 1419489 (+) False ponzr2
TU313203 other downstream 202303 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 1260374 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 1309563 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 1561983 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 1562065 7368562 ~ 7368633 (+) True trnam-cau_30

Expression Profile