RNA id: XM_026943759.2


Basic Information

Item Value
RNA id XM_026943759.2
length 7068
RNA type mRNA
GC content 0.50
exon number 42
gene id LOC113544796
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7718055 ~ 7770444 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atcacattacaAAGCTGTTTCTGGTCAAGCTAAAGCTTCCCAAACAGGGTAGTATGTTTATGCCACCATACTTACTGAGATATTTATAGCAGGGTCTTGTGTTAACTCAGCTGCTCTGcttatctgtgtgtgcatgcactcATGGCTGTGCCACTCTTATTTCAGTCTAGCTGTGCCTCTCAGTGAGTGACAGTGGGACTGTGTGCCTTGTGCTTGGCTTTAAAATTTTCAGAATTGAACGAACAAAACTTAagttggacttttttttttttttttttttttccctcaactcTTCAAAGGAAGCCTTTACAAGGTCCACAGTAAGACTGTTACATTATTTCACCCATTTTCTTCACAACACCAAAGAGCACACCTGGCtgaattgtgtttgtgtggctccTGTCCACAATGGCACTGTCGTCACGCTTAAAACTTTGGGAGCAGAAGATCAAGGATGAGAAGAAGCCGGCGGCGGCTACTCAACCTCCCCCTCCTCTTTCTGTTGTACCCGGTGGATTCCTTAAGCAGcttgtgagagagacagagaaggagacaaGGCTGAAAGAACCCGAACTCAAGGAAGAGAAGGCGCCAAGCAAACTAAGCGAGAACCTAGTCCAGCAGTTCCTGCTTCCAGATCAAACTCCACCCATCTTGGAGGCAGAGATGGCCCTCAGGGCAGAGCAAATGGTCAATGCTGccctgaaagagagaaaaatatccTCCGCAAGAGAGATCCTGAGTTCAGACTCCATGAACCAGAAAGACGACTTCAGAGTCAGTACACCAGAGGCCAATGACCATAAACAAGAGAATGGCTGTAACCTATCAAAGTTTCCAGAGGTGTCAATAGAGAAAGAGAATCTGAAAGAACAAGCAAAGGCACGACTGGATGTGAAAGAGGTTAAGGAAGACAAGATCAGAGAAGTGAGGCAAGAGCCAGAGGGGCAGCTTGCTGATAGCACCCTAACAGAGGAACCCAAGAAACCTGTGaGGGATGTCTGGTATGAAGCTGGTACAGTGTGGTACACACATAAAAATGGCTTCACCCTTGCCACTCAGCTGAAGCCAGATGAGGGCACACCTGAGCTCCCTTATGGGAAAGTAAGGGTTCGACTCCACACAGATGGCTCTGTACACGATGTCACACAGTACGAGATCGAAAAGGTGAACCCACCAGAGCTGGACCTGTGTGAGGACTTGAGCCAATtagtgagtgtgaatgagtcaAGCATTCTGCACACTCTGGCAGGCCGAGCCAAAGCCCACATGGCCCTAACACATGCTGGGCCAAACCTGCTGGCCCTCTGGCCTCCTTTAGCACCACTTGGCAAGGGGCTGCGAACCCATCACTGGGACACATGGGAAGCTCCTGCTCCTCTGCAAGCACTGGTCAAGAAGGTTTATATGTCTATGGTGGGCCATAGGAGGGATCAGAGTGTGGTGGCTCTGGGTCGCAGTGGCACAGGAAAGACCACCTTGTGCCAGGCTTTTGCCCGGGAACTTCTCAAACATGCTGGCACAGCAGGAAATAACTTAACCTTGGAGCGTCTCCAGGCCGTGTTCACTGTGCTGCACTCTTTTGGCTGTGTAAGCTCTCATCACAGCGAGGCCTCCAGCCGATTTGCCATGGTGCTTTCTCTGGACTTCAACCATAAAGGCCTTGCAGCTGCAGCACACCTTCAGACCATGATGCTGGAGAAGTGGAGGGTTTGCCATAGACCTGAGGGAGAGAGCAACTTCTTAATCTTCTCCCAGATGCTGGCAGGACTCAGTGCTGAAATGAGGACGGAGCTACAGCTTCACCAGTTACCAGAGAACAACATATTTGGCATCACTTGCCCCACCAAGGTAGATGAGAAGCAGAGGGCTACAGTGGAGTTTGGAAGACTCTTAGCATCCATGAACACGCTTGGCTTCTCACCTGATGAACAGCGGGCCATTTGGCATGTTCTGGCTGGAATATACCACCTGGGCATGGCTGGAGCATGCAAAGTTGGGCGAAAGCAGTTCATGAGTTTTGAGAGTGCTCAGGTTGCCAGTGCTGTTCTTGGCTGTGAGGGAGAAGATCTTCACACTGCAGTATTCAAACATCACCTAAGGCAGCTACTGCAGAGGGCCACTGGAGCCAACAGAGAGCGCCACCTAGCAGAGGAACAAGAGGAAGGTCCTAAACTGAGTGCAGCTCAATGTGTGGAGGGCATGGCGTCTGGTCTCTATGAAGAGCTGTTTACTGCCATTGTATCTCTGATTAATAGAGCTCTGTGCTCCCAGCAGCTAACACTAGGCTCTGTGACTGTGGTAGACACACCAGGTATACGCAACCCCAGACACAGTGGGAAAGACAGGGCTGCTGGCTTCTCTGAGTTCTGCCATAACTACCTACAAGAAAGGCTTCTGGAGcaccatttcacacacaccttcactaATTTTCTTGACAGATACACACAGGAGAGAGTGTCTGTAGATTTTGAGCCCCCTGAGGAGAGTCCTCAAAAAGTGGTGTGTGCTGTAGACCAACCAGGATTGCAGGTTCGAGGGCCAGAGGGCGACACTCGTGGCCTTTTTTGGGTTTTAGATGAGGAGGTAGTCATGCCCAGTTCTTCTGAGAACACTGTTCTGGAGAGGATATGTCATTACTTCAGTGATACAGTGCGTCTGTGTGAACAGCCTCTACAGTGCGAGATTGCTCATCTATTGGGCTCTGACCCGATTCGCTATGACCTATCTGGCTGGTTTGGTCTGGTCCAAAATAACCCCTCTGCCCTCAATGCCAGCTCCATTCTGCAGAACTCCTCTATtcatGTAGTAAAGGCTCTGTTTGCTCCACGGGCCTCGGTTCCTCCTTTGTGTCGTGGTTTGGGCGGTGTTGAAGGAGGCTCACATCGCTTTCTGGAGAGAAGTGGGAGTGTGCGCAAGACCTTCACTGGAGGAATGGCTGCTATGAGGAGATACTCAAACTGCATTTCTATTAAACTACAAGTGGATGCTCTGATAAACCTGATTCGTCGTGCACAGCCAGTTTTCCTACAGTGTCTCAGTGCTAAGTTCGATGGTGGTGGCTTTGATGTTCCTGCATTACGCACCCAGCTGCACTCAACTCACTTACTACCTGCTTTGCAACTGTATCGTACAGGCTACCCTGATCATATGTCTCTGAGTGATTTCCGCTGCCGCTTCCAGGCGCTGTCTCCTCCTGTAATGAAACGCTATGGCTCCGTCTTTATCACTCCAAATGAGAGAAAGGCGGTGGAGGAATTATTGATCGAATTGGATCTGGATAAGAAGAGTATTGTTTTGGGAGCAAGCAAGgtGTTCTTAAAACGTGGTGTGTTGAGATCGCTGGATGTGCAAAGGGATGGCTTGGTCAATAACTGGCTGGTGCAGATGCAGGCCGCATGTCTGGGGCATTTGGCAAGGCAGAAATACCGCCGCTTGAAGGTGCAACAGATGGCCGTGAGATGTATCCAGCGAAATGTCCGTGTTCTGGATAGAGTTGCCACCTGGAGCTGGTGGAAATTACTGTGTAGAGTGCGTCCCCTGCTGGATGTCAATATAGACGAACACAAGGTCCAGGCCAAAGAGGATGAGATCAGTATACTGAGAAGCCGACTAGAGAAGTCTGAGAAGGAACGGAATGAACTCAGACAGACTACAGACAACCTGGAGaccaagATAATGGCTGTGGTATCTGAGCTGAGTGATGAGAGGTTTTGGGGAGAGGCTGTGAGTCAGGCCttagacacagagagagcagagagactTCGTCTCACCAAGGAAAACAAGGAGTTACAGGATCGTTTGGATCAGAGTAAAGTTACTGTGGAGGCACTAGAGAAGCAGCTGGCTGAGGAGAAGCAGAGAGCCAAAAGCAAAGAGACACTAAGTGGCATGGCTACAGagggTGAACTACAGCTGCAGTTGGATTGTGCACAGACAGAAGTGGAGTTTCTACGCAGACGTTTGCGTCAGACAGAGGAGAGGtttgaagctgagaaagagGCACGAGAACTTTTGGACACCAAGGTTTTGGAGCTGCAAGTCCAGCTGGAACAGTCAAAGCGCACGGTCACAGAGCTGAAGCGGCACTGTCGGCATGTGACTTCTGACCTGCAAGATGCCTGTGTGCTTATGGACAGCTTGCAGGCGCGTACTCATGACCTGGATAGGAAGCAGAGGAGGTTTGACAGCGAGCTTACCCGGGCTCTAGAGGAAGCAGATaatgagagagagcaaaaggaCAAGGCCATCCAGGAGAATATAACTGTGGGGGCAGAGATCTTTTCCCTGCATCGGGCTTTGAAGgaGAGTCAGTTGGAGGTAGAACATTTGCAGAATCAAAAACAAGAGCTGTGTGCTCAGATCCGAGACCTGACTGTGCCCCTGAACCTTGGCTCCGACTCGGTGCCTGAGCTGAAGAAACAACTACGTGAACTTGACAGCAGAGATAAAGAGCGTGCTCAGGAGCTTGCCAGTATGACAGCTAAAATTCAGCAGCAGGAACAGATACATTTGCGCTTTGAGATCGAGATGGAGAGAATGAAGCAGATCCATCAGAAGGAGCTGGAAGACAAGGACGAGGAACTAGAGGATGTGCAGAAGTCTTCACAGAGACGGctcAGGCAGTTAGAGATGCAGCTGGAACAAGAGTATGAAGAAAAGCAGATGGTGGTGCATGAGAAACATGACTTGGAAGGACTGATTGCAACTCTGTGTGAACAGGTGGGCCACAGAGATTTTGATGTGGAGAAGCGACTCCGTCGAGACCTGAAGCGTACCCATGCTCTGCTCAGTGATGCCCAGCTGCTACTGTCCACCATGGAGCAAACCGGGCAGTGCCAGGCCCCAGGTACCAAGGAGCAGTTGGAGAGGCTACAGTGTCAGCTGGAGGAAAGTGAGGCACGGCGTTTAGAGGCTGAGAGTGTGCAGAAAACTCTTGCCATGGAGCTGGAGAATGCTCAGCTGGAGCTGGAGAGCATCTGCAAACACAAGAGCCTGGTAGATGAACAGTTGACTCAGCTGCAGCATGAGAAAGCTGACTTCCTGAAGAGGCTGGAGGAAGACCAGGAGGACCTCAATGAGCTCATGAAGAAACACAAAGCCCTTATTGCTCAGTCTTCTAGTGACATCACTCAGATACGGGAGCTGCAGGCAGAGCTGGAAGAAGTAAAGAAGGAAAGGCAGAGTCTACAGGAGCAGCTGCAGACAACTGCAGCACACTTGCAGTTCCTGGAGTCGTCCACAGTGGCCCGGAGTATTGTGAGCAAGCAGGAGGCACGTGTGTGTGACCTGGAGAACAAGCTGGAGTTCCAGAGAGGCCAGGTCAAGAGATTTGAGGTTCTAGTTCTGCGTCTGAGGGACAGTGTGGTGAGGATGGGTGAGGAGTTGGAGCAGTCTGCTCAGGCTgaggcaagagagagagagaactcgCATTACTACCAGCAGAGGCTGGCAGACATGAGACTAGAGATGGAGGATCTAAGCCTCAGAGAGCAGGAGAGTAGCCGTCGGCGGATGGAGCtgGAAATGCAAGTGGAGGAGCTTAGTGCAGTGCGTCAGACTCTACAAGCTGATTTGGAGACATCAATCCGACGTATCGCTGATCTACAGGCTGCCCTAGAGGAGGTGGAGTCAAGTGATGAAAGTGATACAGAAAGGGACAACGCATCCAGCTTGGGCTCCAGCATTGGCACAGAGGACACTGGGAACGGCATTCAGCACTGGCTGGGGGTGCCACGTGGGGGTCACAAGGGTCGTGGAGGTGGAGTCTCTTCATATGCTGGAAGTACCACTAGCCCCCAGTCAGTCACAGACACAATGAGCACCTATAGCTTCAGATCATGTTCTCAGGAATTGGAGGATGATCTTGCTGAAGGCTCTAGAATTCTGCCTAGGGCATCATCCTCAACTGCATTATCTGAGCTATTGGAGGGCTTACGTAAAAAGCGGGCTGGGTGGGGCAAAAGCTCAGAGGCGGATGAGGGTAGTACAGTATCACTACCCATTTCCCAGCCCACAGCAGCCTCCAGCCTGCGTCGCCGAGCCTTCACCCTCTCCCCAGACACAAATGACAGCCTGGAGGAAGCAGTGCGTCCGGGAATCCTGAAAGTGTCCAGCTCTCTGCTGCCCCATGCTTCCAGCCTGCGCTCCCTGTCCGAATCCACGCCATCTGCCCCCTCAACCACGTCCACTATGAGCAAGGTAAACCGCATTGGCTCCTGTGACTCCCTTACATCAGTGCGGTCCTCCATGCAAATCTCCAACCTCTCTATCCCAGAGGAATGGGAGGGGGATCCTGGTGCCAAAACCCTGCCTGCCCTAGGCACCCATCAACCAGTCCGCCACCAGCTGTTTAGGGGTCTGGCTGCTGAAGGTGGTGGTGAGGCCCTACTTGGGTCAGAACCACTTGTCTTTCAGAATCGGCGTCTTCTAGGAAATCTTGAAGCTGACAAAGAAAGAGTTAGAAGCGATTTAGGGGACGCCAACTCAGACATTGTCCCAGCAATCCGTAGATCACAGTCTATAAGCAGCTTAGCAAGTAGCAGCTCCAGAGGGGGTCAGCGTCGTGCCCTAAGTGTGCACTTTGGAGAGCTGCCACCTTCCAGGGCATTGTGCAAGGATTCAGATTCAGACTCTTCTGATTCTGAAGGCTCTCAGCACCGGATTGGCCCACATGAAAAGAGGCTAGAGGCAGAAGGAAGTGAGGGAGATGTCAATTCAGTGATGAAAAAATATCTGAGGAAAGCTGAGGTTGACTGAATATAAGGAATTGAGTGAGGACTTTTCCCTTCATGGTggacattttattacaaattctaGCAGTGTGGAAAGAAATTATTCAAAAACACACTagttctgtaaaaataaatacataacttACCTTTTAATCAAAATTTTCATGACTAGATTCAGTTATTAGGTGCTGCTGATGTTCTTTTACACGTGAGAAAAGACAAGTAGTCATTCTACCCAGAATGCAATCACATACATTGCTGAAGGTGGAAGCACAATGAATATGCTGCACATTCTACACTGTACACATGAATAAAGGATTTTAATGAAACAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314382 lncRNA upstream 8262 7707400 ~ 7709793 (+) True G265331
TU314379 lncRNA upstream 56975 7659527 ~ 7661080 (+) True G265328
TU314377 lncRNA upstream 77319 7638978 ~ 7640736 (+) True G265326
TU314376 lncRNA upstream 79989 7636886 ~ 7638066 (+) True G265325
TU314344 lncRNA upstream 132153 7585611 ~ 7585902 (+) True G265294
TU314480 lncRNA downstream 73345 7843789 ~ 7844656 (+) True G265417
TU314446 lncRNA downstream 74349 7844793 ~ 7847877 (+) True G265383
TU314481 lncRNA downstream 78359 7848803 ~ 7849034 (+) True G265418
TU314482 lncRNA downstream 80926 7851370 ~ 7851629 (+) True G265419
TU314483 lncRNA downstream 81471 7851915 ~ 7852265 (+) True G265420
XM_026943872.2 mRNA upstream 706 7628081 ~ 7717349 (+) True grk3
XM_026943921.2 mRNA upstream 97482 7618299 ~ 7620573 (+) True cryba4
XM_034312378.1 mRNA upstream 283129 7432541 ~ 7434926 (+) True LOC117599324
XM_026943711.2 mRNA upstream 324575 7384282 ~ 7393480 (+) True oclna
XM_034312855.1 mRNA upstream 336067 7371116 ~ 7381988 (+) False marveld2a
XM_034312496.1 mRNA downstream 15234 7785678 ~ 7855941 (+) False LOC113544706
XM_026943618.2 mRNA downstream 15236 7785680 ~ 7855941 (+) True LOC113544706
XM_034312495.1 mRNA downstream 36165 7806609 ~ 7855941 (+) False LOC113544706
XM_034312494.1 mRNA downstream 36202 7806646 ~ 7855941 (+) False LOC113544706
XM_026943620.2 mRNA downstream 40284 7810728 ~ 7855941 (+) False LOC113544706
trnam-cau_33 other upstream 347716 7370268 ~ 7370339 (+) True trnam-cau_33
trnam-cau_32 other upstream 348177 7369807 ~ 7369878 (+) True trnam-cau_32
trnam-cau_31 other upstream 348639 7369345 ~ 7369416 (+) True trnam-cau_31
trnar-ccu_7 other upstream 348720 7369263 ~ 7369335 (+) True trnar-ccu_7
trnam-cau_30 other upstream 349422 7368562 ~ 7368633 (+) True trnam-cau_30
TU314651 other downstream 406222 8176666 ~ 8187611 (+) False tmem167a
XR_003404565.2 other downstream 504603 8275047 ~ 8276323 (+) True LOC113544932
XR_003404563.2 other downstream 563027 8333471 ~ 8353841 (+) False LOC113544929
XR_003404564.2 other downstream 563046 8333490 ~ 8353841 (+) False LOC113544929
TU314760 other downstream 563058 8333502 ~ 8353815 (+) False LOC113544929

Expression Profile