RNA id: XM_026943772.2


Basic Information

Item Value
RNA id XM_026943772.2
length 4089
RNA type mRNA
GC content 0.38
exon number 14
gene id scarb1
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7890041 ~ 7910255 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTACATTAACCGTGGTTCCAGGAAGAGCGGCTGGCTTAACCACAGTATTTATAAGGTGTTGTAAATATGAGCGGGGGTGAAATCTGGAACTTCGTATCCTGCTGCGTTTCTCTGAACTCATTCGAGAGTACACAGAAGAAGCCGTGTGACTCTTGCAAGCCAGTTGTAACTTCTTTCTTGACAATTCAGTGGCTTAAAAAACTGACCAGGGAGATTACAAGGCCATTAACTTCACGTGCAACATTTAGAGAATCAGCTTCAATATTTAAAGCGGTTACGTCCATTCTCCATGGCCACGTCAAAGTCTAAAAGAGCAATAGGACTTTCAGTGGTCGGACTTTTAGCAGTTGTTTTTGGGACTGTTCTTGTGTTTGTGGGACCAGTTGTTATCGACGATCAAATAATAAAGAATGTAGAAATCAACCCCCAAAATAACCTCTCCTACACTATGTGGAAAGACATTCCTGTACCATTTTTCATGTCCATATATTTTTTCAATGTTCTCAACCCTGAAGAGATATTGGCAGGAGAGAAGCCCACAGTTGAGCAAAGAGGTCCATACGTGTACAGGGAGAAGCGTTGGAAAGACAATATCACTTTCCATGACAACAAAACAGTGTCTTACCGTGAATATCGGCAGTATTTCTTTGAGGAGAGCATGTCTGTAGGCAATGAATCTGATATGGTCACCATCCCAAACATGCTAGTGCTGGGAGCATCAGTGATGATGGAGAATTTGCCCCTTCCACTGCGGAAAATGATAAGTATCACCTTCAAAACTTTTAAGGAGGGCCCCTTTGTGACAAAAACTGTAGGCGAGCTTATGTGGGGCTACGAAAGCAAGTTGCTGGACTTTCTGAACAACTTACTCCCTGGCATGATGCCATTTAAAGGGAACTTTGGACTATTTGTTGAGTTTAACAACTCCAACACTGGGTTGTTTACTGTCTTCACGGGTCAGGATGACATCAGGGTAGTTCACAAAGTGGATTCCTGGAATGGTTTGAAGAAAGTAAACTACTGGAAATCAGACCAGTGTAACATGATCAATGGTACAGCAGGGCAGATGTGGCCACCATTCATGACTACAGAATCCACTCTGCCATTTTACAGTCCAGATGCCTGCAGGTCAATGGAGCTGGTGTATAAGAGACCAGGAACTACGCAAGGAATCCCTGTGTATCATTTTGTGGCTCCAAAAACACTCTTTGCCAATGGCTCAGATTATCCTCCAAATGAAGGCTTCTGTCCATGCAGACAGTCAGGTCTTCTTGATGTTAGCACTTGCAGGCATAACTCCCCTACATTCATTTCCCATCCACATTTCTACAATGCTGATCCTGCCCTTTTGCAGACTGTCAATGGACTTAGCCCCAACGAGGATGACCATGGGCTCTTCATTGACATACATCCAGACACTGGAATACCTATGAATGTGTCTGTCAAGCTGCAACTTAACCTGTTAATGAAACAGGTATTAGGAATAACACAAACTGGTAAAATAGCTGAAGTAGTGATGCCTTTGCTTTGGTTTGGTGAGAGTGGCTACATTGATGGGCCTGTACTCAGTGTGTTCCGAATGAACCTTGTAATTTTACCTCTGGTGATAGAGTATATGCAGTACACCTTCATTGGACTTGGACTGGGCTGTATCATAGGAGCAATGGCGCTGCAACTTAGTAAGAAGATAGACAAGAAACAAGGGACATTTGGAGTCACAGAAGACAAGGGGGGAAGCAATAAAGACACAAATCATGATCCAACTCACAATGAAAAGTATATCGTAAAAGATACAGaaaaaaattagcattttcCAGGCCTGTGCAGATGAGAACCCAAGATCTTTGGACAATGGAAAAACTCTGTTGGTATATAACATCGAGTATTACAGTGCTTTCTCTGCTTTCATAGTGCTGACTTTCTTCAATCCTAATTCTAAGAATCACAGGAAACTGATGGTGGTGTTTGTATTTGGGTGACCTGGTAAAAGAGCATCTTAACCATGGACTTATAAAATTCTTACTTTGTTTCtaactttgtgtgttttttcagtttCCATGGTAGGCTACATCTGTGTTTGGATGTTTAAGAGCTGTTCATTTGGTGGGAGGCAGTCTTATTTATTCTGAGATTTAAACAGGGTAGAATGCAACTAAGCCATATCTGCAAattgttgcagtttttttttaaatacattttttagatTCTTCAAAAAGTATTTTTCGCTTAGCATTTCAGTTTGAAGTAGATTTACAAAAGAGCTCTGTTCATATTACTAAATGCACAAATGAGCTTcctatattaaaatatgtttattagaATGTTTCTTAAACAATAAGGAGGAACTAGAAATCTTATTTGCCATGAAACTGTAATGTTTTGTTAATTGTCTTGAAATATTTTGTGCTTCTTGGATAGTGGTTTGTACTAATATTGGAGTTCTCATATGCCAAAACAACCAAAGGATGAAATTATATGCACCATGAATACAGtttggatgggacaccagttcatcacgggtatataattcaaatgtcaaaattcTTATTCAAATACTTCCAAAATCCATAGCTTCCCTGCCAGAAAAAATAGAGTAAAGCCTTATCTCATTTTACCTAATTCTAACACTGGttaatttgaaaataatgaTCTTCAAATTATGGTGCCTAAACTCTGCTCAATTCACAAACAAATCTTGTTGCATATGTTTGAAGTTACAAATTGTAAGACCgtggtggatttttttctgatttccaTGTGTCATAGGTAAATTGGATATAAAATTAAGGGAATAGTTAGGGTCATGATTATCACAATTGATCATCTATCTCAGATACACAGAGCACACAGAGtagatacagatacacagagTAACATCTCAAAATTTATTACAACATAAATGTTAATAGTCATCTGAATATAACATAGTCTATATACAGTTTCTGCAGTTATCACTGTGCCTGAAGTCAAACTAAAATTCCAATAAGCtccattttttcatttactaGCCACAGATGGGTGACAGGACAAACCTGTGACTGGTCCTTAGAGAGAAGGGTCACTGTAAATCAATTCAAAGTTCTGACTAAACACCTTATcttatgatgaaatatttctatgcTGATGAGAGTGGACTTTTCCAGGATGACATACATTTTATAGATAAAACTATATAACTACTAAACAAAAGACTGCAGGTCTATTATTAAATAGCTTTATCTCTAATGGCAGAGCCATTCTAGATCTATGTATCCTCCTAAATTAGCTTAATTTTagaagaaatatacagtattaggCAGCATACAGAGCAACCAAGGTCTTCCTGTAGTTATCACAGCAGATATAGCCAGACATGCTAATCTCATGATGTGACATGTTTACTGCTGAAGTGACAGGCTATGCCCAAAGCAAAACTGATTGCACTGAGTTGGCTCAGCTGCTTAGGAAAATAACCTCCCTCTCTATGAGCACTTGACACCTATGCTGTCCAGACTGACTGAGATAGCAAAGGGAGACAACTTAGGGCTCCAGTTAGAGACTTCGAGATGCAGTAACAGGAGGTGGAGATCAGATggttgaaatgtgaaaaaaagataCTGATCATACTGATCTGGGCCACTTCAGCATATGCAGCAGACACAGCTGGCTCAATATTGTGGCTCAATTCATCCTACAGTAAACTCACGTTAAATAAACTCCTACACAGTTAAAATCCAATAAAATGGATTTTGTAAAACCACCTTGAGTTTTATTGTCActatataaacaaattattattattattattattattattattattattaatattcaaaataaaacctAATTAAAACATAATCTCCACTTTGTTCAATGAAAGTGTTTCAGCATTTAACAATTGTCCAGATTCTTATTGAAAAATGTTCTTCCAGCTGTGTGTGCAGCCACTGAAATTgagatttaattaattaattaataaaaccaacaaaattAATACAATTTGACAGCCATGCCAATTATTGACCACTTTGTCATTTTAtgtttgtattgtatatttaaccttgaaatgaaaaagaaaatacaactgAAACTCAGTCAAACCACCTGA

Function

GO: NA

KEGG:

id description
K13885 SCARB1; scavenger receptor class B, member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314483 lncRNA upstream 39246 7851915 ~ 7852265 (+) True G265420
TU314482 lncRNA upstream 39882 7851370 ~ 7851629 (+) True G265419
TU314481 lncRNA upstream 42477 7848803 ~ 7849034 (+) True G265418
TU314446 lncRNA upstream 43634 7844793 ~ 7847877 (+) True G265383
TU314480 lncRNA upstream 46855 7843789 ~ 7844656 (+) True G265417
XR_004579852.1 lncRNA downstream 65404 7975659 ~ 7977423 (+) True LOC117599395
TU314593 lncRNA downstream 72404 7982659 ~ 7986096 (+) True G265490
TU314628 lncRNA downstream 185148 8095403 ~ 8097573 (+) True G265520
TU314654 lncRNA downstream 265259 8175514 ~ 8187611 (+) True tmem167a
TU314652 lncRNA downstream 266411 8176666 ~ 8187611 (+) False tmem167a
XM_034312276.1 mRNA upstream 27368 7860866 ~ 7864143 (+) True ubc
XM_026943616.2 mRNA upstream 27368 7862227 ~ 7864143 (+) False ubc
XM_026943615.2 mRNA upstream 27368 7862227 ~ 7864143 (+) False ubc
XM_026943622.2 mRNA upstream 32686 7856023 ~ 7858825 (+) False tpst2
XM_026943629.2 mRNA downstream 26973 7937228 ~ 7944128 (+) True cetn3
XM_026943628.2 mRNA downstream 27628 7937883 ~ 7944128 (+) False cetn3
XM_026943735.1 mRNA downstream 266636 8176891 ~ 8187610 (+) False tmem167a
XM_034312463.1 mRNA downstream 289825 8200080 ~ 8217268 (+) True LOC117595648
XM_026944007.2 mRNA downstream 419450 8329705 ~ 8353841 (+) False LOC113544929
trnam-cau_33 other upstream 521172 7370268 ~ 7370339 (+) True trnam-cau_33
trnam-cau_32 other upstream 521633 7369807 ~ 7369878 (+) True trnam-cau_32
trnam-cau_31 other upstream 522095 7369345 ~ 7369416 (+) True trnam-cau_31
trnar-ccu_7 other upstream 522176 7369263 ~ 7369335 (+) True trnar-ccu_7
trnam-cau_30 other upstream 522878 7368562 ~ 7368633 (+) True trnam-cau_30
TU314651 other downstream 266411 8176666 ~ 8187611 (+) False tmem167a
XR_003404565.2 other downstream 364792 8275047 ~ 8276323 (+) True LOC113544932
XR_003404563.2 other downstream 423216 8333471 ~ 8353841 (+) False LOC113544929
XR_003404564.2 other downstream 423235 8333490 ~ 8353841 (+) False LOC113544929
TU314760 other downstream 423247 8333502 ~ 8353815 (+) False LOC113544929

Expression Profile