RNA id: XM_026943800.2


Basic Information

Item Value
RNA id XM_026943800.2
length 2324
RNA type mRNA
GC content 0.45
exon number 2
gene id tor4aa
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7169248 ~ 7174553 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGAGCAGATAGGTGGAGTTTAGAGTAAGTTTTGAGTGGAGGTCAGCGAAGAAttacctcctcctcttcttcttcttctgtcctTTTCACCATGCTATGTGCtgaaagaagactttgagactTTCCCAAAGCTCTCTCTAGTGATCTGTTGAAGATGGGCGACCAAAACCTTCCCGCCATGCTTTCGGAGGATGaactggagaagaagaaggaacaCAGGACAGTCACGTTCTCCCAGTTCTCCTCAACTGTACGAGCCGTGCTGCGAATTCGCCAGAAGTACCAAGCGATGAAAAGGCGCCGCGTGGACCGGTCAGCATCCCAGCACAGTGCTCATTTAATGTCTCAGCGTGGTGATCTGCGCTCCACCAGCCCCAAGATCTTCACATTCGATATAGTTGATGGTAATAGTCCTGTCAATGTAggcaagaaaaagagaaagaaaaaggcaCGTGTCCTGTTCCCCAATAGCAGCCGCCGAGTCTTGCCCACCAAGGAGCAGAGCCGGGCCAAGAGCTGCCTGGTCTTGCTGTGCGTTGTGGTTTTCTTGCAGGTTTACAACGCCATCGAAAACTTGGATGACCATGTGCTCAAATACGATCTGGAGGGACTCGAGAAAACCCTTAAAAGAGAGGTTTTTGGACAGCAGGAGGCAACTGATGGCCTGTTGGGCCATTTAAAAGATTACTTGTCCACATACGTTCACAGTAAACCTTTGGTTGTGTCTCTTCTTGGGCCCAGTGGTGTAGGAAAGAGTCACATAGGAAGGCTATTGGCTCAGCACTTCCGTTCTGTGGTGGGCGAGCAGCTGGTCATGCAGTACTTCGTCCTCCACCACTGTCCCACGGGAGGAGACGTCCCGCTCTGTGCCGAAACTCTGACCTCCCAAGTCTCTGAGATGGTCACTCAGGctgaagaagaggagaagatcCCCCTGTTCATCTTTGATGAGATGGAGCACATGCCTACTGAGCTGCTGGACACTGTGCGCGTTCTCATCGCGAAAAAGGACAACAACGAATATCTGAACGCCATCTACATCCTCATCAGCAACCTGGAGCGAGAGGAGATCACAAAGTTTGTGCTGCAGAACTCCACGAGCATCACCAGTTCGGGCCGAGGGCTCATTAGCAAGGAGTTGAACGCTTTGCTGCTTAGTAATCTCAAAAAGCACCACCTGCTTTGGCTGGAGGCAGAGTTGCTGCCTCTCACACTTCTGGAAAAAAGCCATGTGATGGAATGTTTTATCGACGAGATGTCTCGGGAAGGATTTTACCCAGAACGTTCTCATGTAGAAAGACTAGCAGACGAGCTGGGTTACTATTCTGTGGGTGAACGAGAGTTTTCACGCACTGGATGTAAGCAAGTGGTGGCAAAAGTGAATCTTCTGTGAAACCAAAGGCTGTGTACACTGAGGCCATGCAGAAGTGTATCCTGTTAGTAGAAGAATATTCGAGGAATACACTGATGCATCAAGATCCGTACTAGTCTGCGATGGCTGGAAAAGACTGGCATGGTTTCACTGTTATTTTTATAGCTCTAAACAGGAATGTTATGAATGttgaattttaaaagaaaattactgattttttttaatgccattgTTATTTTCCCCAATATATTTGTTAATGGAAAGTGTCAACGACTAtttctctctcacgcacacacacagcgcaaATGGATTCCTGTCTACTTTGTTTTGTAGTTGGCTGTTCCTGGTAAACTTTTGTAGGATGAGACATGTCAACAAATGGTAAATTCTCCCTAGAGAAACTAGGGTGGTGCAGCTGAGAGACCTTTccggaaaaaaaacactgaatataaTATTTCAGGGCAGACCTACAAAGCCAGAGGTTTCAGTGAAATACTCAGAAACaggagtaaaataaaacaaaaaaaactgaggtGAAAGTACTGAAACCTGACCATTTTTCTGTTAACCTCCTTTGAATAACCTGTACCTTGGTGTCTTGGAGTCAGAGTCCCCCATTTTAGATGAGCATAAGAATTGGGATAATCATGTATTGTATTGCCTGAAGTTCTTATTTTCCATCGTATTGGAAAACGCTCTACATGCTCTAAGATATCTGTACTTTTAGTACAGCTCCAGGTTAAAGATCACACACAAATTACACTGTAAAAGCACACATCAAACTAGAGGCTTGGTGATTATTTTTTGGTTTACAGTGTAATAAATTCTGATAATTCAGTAGAAACTACTTTGTCACCATTTGCTTTGCCCCAGTGTATATGATTATTGAAGGACCGAATGAACATCATGTTATAGAATTATAGAACATAAGTAAAACTACAACTCTAAGTA

Function

GO:

id name namespace
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313953 lncRNA upstream 5138 7165128 ~ 7166073 (+) True G264976
TU313947 lncRNA upstream 13644 7154274 ~ 7157567 (+) True G264970
TU313949 lncRNA upstream 17347 7152799 ~ 7153864 (+) True G264972
TU313921 lncRNA upstream 80249 7089667 ~ 7090962 (+) True G264944
TU313915 lncRNA upstream 115552 7055347 ~ 7055659 (+) True G264938
TU313963 lncRNA downstream 73632 7248185 ~ 7249078 (+) True G264986
TU314033 lncRNA downstream 193936 7368489 ~ 7369482 (+) True G265039
TU314005 lncRNA downstream 242681 7417234 ~ 7417633 (+) True G265023
TU314046 lncRNA downstream 245457 7420010 ~ 7420244 (+) True G265052
TU314047 lncRNA downstream 248217 7422770 ~ 7423011 (+) True G265053
XM_034312717.1 mRNA upstream 18906 7127751 ~ 7152305 (+) True naa25
XM_034312715.1 mRNA upstream 18906 7127931 ~ 7152305 (+) False naa25
XM_034312716.1 mRNA upstream 18906 7127931 ~ 7152305 (+) False naa25
XM_034312947.1 mRNA upstream 44965 7116051 ~ 7126246 (+) True ddx55
XM_034312806.1 mRNA upstream 57217 7108513 ~ 7113994 (+) False tmed2
XM_026943942.2 mRNA downstream 8395 7182948 ~ 7197818 (+) True slc25a1b
XM_026943737.2 mRNA downstream 24495 7199048 ~ 7242018 (+) False pi4kaa
XM_026943739.2 mRNA downstream 24495 7199048 ~ 7242018 (+) False pi4kaa
XM_026943736.2 mRNA downstream 24496 7199049 ~ 7243280 (+) True pi4kaa
XM_026943738.2 mRNA downstream 24496 7199049 ~ 7243280 (+) False pi4kaa
TU313944 other upstream 52595 7116060 ~ 7118616 (+) False ddx55
TU313925 other upstream 88770 7066871 ~ 7082441 (+) True G264948
TU313203 other upstream 1159309 6008800 ~ 6011902 (+) True G264336
TU312620 other upstream 2090594 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 4353953 2795548 ~ 2817258 (+) False pcp4a
trnar-ccu_6 other downstream 193927 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 194009 7368562 ~ 7368633 (+) True trnam-cau_30
trnar-ccu_7 other downstream 194710 7369263 ~ 7369335 (+) True trnar-ccu_7
trnam-cau_31 other downstream 194792 7369345 ~ 7369416 (+) True trnam-cau_31
trnam-cau_32 other downstream 195254 7369807 ~ 7369878 (+) True trnam-cau_32

Expression Profile