RNA id: XM_026943834.2


Basic Information

Item Value
RNA id XM_026943834.2
length 2953
RNA type mRNA
GC content 0.54
exon number 16
gene id rfx3
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 4865568 ~ 4883273 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGCCCTGTTATCCGGCGCCATAGTCACCGTAGTCGTGGCGACTGTAacccaccaacaacaacaaccagcaCCTCGCGCTCCATCCTTACCGCCTCTgccatcctcatcctcatctccacacacacttcagGCGCCATGCAAACCCCAGAGGCTGGCGCTGACTCCTCGTCCACGGTGCCCCTCCAGACCAGTGTGCCTGTGCAGCCTGCTGTCACCACCCAGCAGGTGCCCACTCAGGTGCCCGTCCAGCAACAGGCACAGACTGTTCAACAGGTGCAGCATGTGTATCCGTCCCAGGTGCAGTATGTGGAGGAGAACAGCGGCGTCTACACCAACGGAACCATACGCACATACTCGTACTCAGAGCCGCAGCTGTACAGTCAGAACAGCAGTGGGAGCTACTTTGACACGCAGGGCGCCGCGCCCCAGGTGAGCACGGTGGTGACGACTCACAGCTTGGCCAACAACGGCAGCACTAACGGCGGGCTGGCTATGGGCCTCACGGGGGGTCAGATCATCAGCAGCTCAGGGGCCTACCTGATTGGGTCCAACGCCATGGACGGCTCCGCCCCTCACACCGCAGCACAGACCACCAGGGCCTCTCCTGCTACGTTGCAGTGGCTTCTGGATAACTATGAGACTGCAGAGGGGGTGAGTCTGCCTCGCTCCACACTCTACAGCCATTACCTGCGCCACTGCCAGGAGCAGAAGCTCGATCCAGTCAACGCCGCATCGTTTGGGAAACTCATTCGCTCCATCTTCATGGGCCTGCGCACACGCCGCCTCGGAACCAGAGGGAACTCCAAGTATCATTATTACGGGATCCGCGTGAAGCCAGACTCACCTCTGAACCGGCTGCAGGAAGACATGCAGTACATGGCACTGCGGCAGCAGCCTGTGCATCAGAAACAGAGGTTCAAGTCTGTGCAGAAGGCAGATGGCTTTTTAGGAGACAACTACTCGAGCAGCGGGCATCACAATCCCAACGTCGCCGAGCAGACAGTCCTCGCACAGAGCCAGCACCATCAGCAGTTCCTGGACGCATCTCGGGCCATTCCCGAGTTTGTAGAGCTCGATCTTGGAGAGAATGGGGTGGATGGTGTCAGCATGGAGGACATCAAAGCTCTTCAGATACTGTACAGAGAACACTGCGAGGCCATCTTGGACGTGGTGGTAAACCTCCAGTTTAGCTTGATAGAGAAGCTGTGGCAGACGTTCTGGCGCTATTGCCCTTCCAACTCAATAGAGGGCATCACCATGACGGAAAACAGCGGGATGAGTGAGATTGAGGGGCGTCTGCCACGTGCCAGGCTGTTACTGCTGTGCCATAGCGAGGCCGTGCTGAAGTGGATGAACACCTGCGATCACCTGATGTACCAGGCTCTAGTGGAGATCCTCATCCCTGATGTCCTCAGACCCATTCCTAGTGCCTTGACTCAAGCCATCCGTAACTTTGCCAAAAGCCTTGAGGGCTGGCTCACCAATGCCATGAGCGCCATTCCCCAGAAGATGATCCAGACCAAGGTATCCGCTGTTAGTGCCTTTGCGCAAACCCTGCGCAGATACACGTCTCTGAACCACCTGGCCCAGGCAGCGCGTGCTGTCCTGCAGAACACCTCACAGATCAACCAGATGCTCAGTGACCTGAACCGTGTGGACTTCGCCAATGTGCAGGAGCAGGCATCATGGGTCTGCCAGTGCGAGGAGGGCATGGTGCAGCGACTCGAGCAGGACTTCAAGGCTACGCTGCAGCAGCAGAGCTCCTTGGAGCAGTGGGCCGCCTGGCTCGACAACGTGGTCAGTCAGGTCCTCAAGCCCTACGAGGACAGGCCGAGTTTCCCTAAAGCAGCCCGCCAGTTCCTTCTCAAGTGGTCCTTTTATAGCTCGATGGTGATCAGAGACTTGACCCTGCGCAGTGCTGCCAGCTTCGGCTCCTTCCACCTGATCCGGCTGCTCTATGACGAGTACATGTTCTACCTGGTGGAGCACCGTGTCGCCCAGGCAACCGGAGAGACACCCATTGGGGTTATGGGAGAGtttgatgACTTGAATACCATGTCACCTACCAACATTGATAAAGATGAAGTAAGCGAGATGGACAGCGAGCTGGACGAGGAGATGCAGGAGGCAGGCGAGCCGCTGGCCAAGCAAGAAAAAGCAGAGGCTGAGGTGATTCAGGTGTTGCAGGTGGGGACTATGGAGGACGGAAGCAGCGCCGTGGTGGGTGTGGTGCAGCCGGACATGCTGGGTACAATGGGGGTGCAGCAGCAGTCCACCATCCGTCACTGCGGTGGGGCTGGGAACGCCTATGCCTCTGTGTGACACTTTCACCAGCTCtctctcaattttttttcttcttatccCTCCACATGACACCTCCTAGTTGTATTCATTTACATCTCATCCTCACATGTAACACGCTCTCTTATGTTCAGCAGGGTCTGATCACAACACTACATCAGCAGATGCTTCAGTCCTGCACTGCCATTATTTGAACTTCATTTATGTGATCAGTCTATTTGATTCAGAGTAACCCTTGAAGGAGAGAAGGTGCTCAATGTTAAAGTCCCTTCGCTGAAAAGAATgggtaattttttattttttttttccagatgagCAAGAACTCAAATCCAAGTCACTAGCTCcacaggaaaaacaaacaccactgaatctcaaaatgtatttgtactgttgatcattgtttttttttttttttttttctttcctgcgTGGCTTTGTGTCAGAGTTGGAAATCTTGCTGTGTATTGTGCTGCTATAACCTCAAGTGAGCTGTCCAGAGATGTCCAGCCTCCTCCTTGAGCTGTTCTCATTGCCTTCTGTTTGTCGAATCAGTCTCTTGGTCTGGTCTTATGAGAGGATTCATTTCACATCCTCTACGTATCCAGTGCAGACCTGGTGAGTTTTTGCAGTTTtggtggtggttttttttt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0050796 regulation of insulin secretion biological_process
GO:0060285 cilium-dependent cell motility biological_process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312395 lncRNA upstream 89859 4721546 ~ 4775709 (+) True G263634
TU312366 lncRNA upstream 244078 4618066 ~ 4621490 (+) True G263612
TU312320 lncRNA upstream 366324 4498199 ~ 4499244 (+) True G263566
TU312167 lncRNA upstream 579362 4285977 ~ 4286206 (+) True G263439
TU311683 lncRNA upstream 679314 4185759 ~ 4186254 (+) True G263025
TU312487 lncRNA downstream 54 4883327 ~ 4884727 (+) True G263715
TU312488 lncRNA downstream 2073 4885346 ~ 4886801 (+) True G263716
TU312598 lncRNA downstream 140002 5023275 ~ 5025508 (+) True G263801
TU312774 lncRNA downstream 321722 5204995 ~ 5205419 (+) True G263953
TU312815 lncRNA downstream 689691 5572964 ~ 5573280 (+) True G263993
XM_026943830.2 mRNA upstream 1431 4842081 ~ 4864137 (+) True glis3
XM_034312849.1 mRNA upstream 297205 4496472 ~ 4568363 (+) True bmpr1bb
XM_026943728.2 mRNA downstream 111433 4994706 ~ 5016446 (+) True LOC113544783
XM_034312556.1 mRNA downstream 111433 4994706 ~ 5016446 (+) False LOC113544783
XM_026943877.2 mRNA downstream 175402 5058675 ~ 5074781 (+) True sgsm1b
XM_026943876.2 mRNA downstream 175813 5059086 ~ 5074781 (+) False sgsm1b
XM_026943913.2 mRNA downstream 194580 5077853 ~ 5080643 (+) True triap1
TU311007 other upstream 2048310 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 2518183 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 3446079 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 3446133 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 3628436 1205991 ~ 1237132 (+) True G261503
TU312620 other downstream 194608 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 1125527 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 2183598 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 2232787 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 2485207 7368480 ~ 7368552 (+) True trnar-ccu_6

Expression Profile