RNA id: XM_034312577.1


Basic Information

Item Value
RNA id XM_034312577.1
length 4239
RNA type mRNA
GC content 0.49
exon number 35
gene id LOC113544842
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 6099069 ~ 6115392 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttGCTTTATCCTGTGGACCAGCTACCCATTTATAAAGTGTCAAACCTGTCAGGTACccatttttaaactgttaaaccTGTCCTACAAGATGGCGTGAATGGTGCTCCTTGTTTCGTCATTCCTGTTTCGTTGTCATCAGACCTGTTTTTAAAAGGGTGAAATCTCCTGTGTGGGTTTGAGtcttttttttggaactggagGAACAGTTCAGTGCTTTTCACTTGTAGACTTTGTGCCTGTGTGATGTGGATGTCatctttcattatttaaatcaaGCTGTTTGGATATTTTAAAACATCTGCATTTACAGAACTCTCTCAGGgatttgggaacaacagcatagATATCCTGTTAGGTACGCATTCGGAAAGTGGAGCCGTTACTTTCTGGTCCCATGCTGTGAATTTGCCACTGGCCAGCAATGCCATCCTCAGCTGGAAGTTCTGCCATATGGTGCATAAACTCCTACGTGATGGCCATCCTAATACCCTGCGAGATAGCAAAGGACATGTCCCAAATATTAAGCAAATGGGATCTTTATGGGGAACCCTCCATGATCGATATGGGCATATTGTTGCTCTGTATGCGAAGTTCCTGTGCATCAAAATTGACTTCCATTGTAAGCACAAAGTGATTCCACCAAATCTTGAAGTTCCTGACGAGGTCCTTGAGAGGGCTATTGCAGTTGATATAAATGAAGTGTTTGAAACCACTGGTGAGGTGCTAGACTATATGGATGCTGCACTTTTATTACAGGAAACAGTTTTCAGACAACTTGAGTCCAACAATACGAGCTCAACGACTGCTGTGGGTCAGTGCCGCCTAGCTCCCTTGGTCCCACTTATCCAAGACTGTAGCCCTCTCTATCACTTCCTTGTCAAGCTCCTGTTCAAGCTACACAGCCGAATACCCATGGATGCTCTGTTGGGCCATCGTGAGCGATTCCGTGATCAGTTCAACAGtcTTTCCCAGTTCTTTGAGAAAGCCAGGAGCATGGAGTTCTTTAAAACCATCATACAGATCCCTGATTTTCCTGATTCCCCTCCAAACTTCCTGCGTGCAGCTTCGTTGGCTGATTATGTCAAGCCAGTGGTGGTTCATAATCAGCTTCCTGAAGATGATGATACAGAGACTCAGGTGGAAGCTGGTGAAGGATACCCAATGTTCTATTCTTTCAACCAGTATGACCCAACAAATGACGTACCTGTCCAAAGGGAGAAAGAGGTCGACTCTCTGAGGAAGGAGCTTGAAGCAATGAGACCTGAGGTGCAGATGTTCAAAGCAGAGGCCCAGCGTGCCGTCATCCACCTGAAGGACCAAGTGAATAAGTTGGAGGCGGAGCTAGAAGACCAACGCACTCACAAGCAGATGGCTATGGTGGAGAACGAGCAGCTGCGCATGGAGGTGGAGGCATTAAGGACACAGACGGCAGTCGCTGCGAGTATGCATGCCTCTGTAGACGACAGCCGAGTTCAAACTGCCCAGATGCATTTCACACGGCTTAAAGAAAAGCACGCAGAGCTGGTCACCAGGCATGCTGATCTCATGAGAAAGAATGCAGACATGGTGAAGCAGCTGACCAGCACTCAGCAAGCTCAGGAGGAGCTGGTCAAGGTCAAGCAGCAGATTGCAGAAGACCTGGAGCAGCTCAAACAGGAGAACAGTACCAAGCTTGAAGCACAGAAGGCAGAAATCATCCAACTGAGGCAAGAGCTGCAGACTGGAAAAGCTGAAATAGTAAATGTTCAGAGTGCACTCCAGAGCAAAGAAAAGgcAGGAGATCAGCTGAGCAGTGTGTTGGTAGGGCTTCAGGCTGAGAAGGAAACATTGATGCGCTCTCTGAAAGAGCAGGAGGCTGAGCTTGCTAACCTGCGCCAGAGCACTCAGCTGCACCAGACCACGCTGCACCAGGAGCGAGACAATACCCAAAGAGAGATTGACTCCCTGAAGAGCCAACTACAGGGAAAAGTGAGTCGAGAACAGGAGCAGCAGATGGAGTTGGATAAACTGAAGAGAGAGCTGGAGTTGAAAAGAGCAGAGGCACTAAGTGTGCAGAGTGCACTACAGAGTAAAGAGACGGCAGGAGATCAGCTGAGCAGTGTGTTGGTGGGGCTTCAGGCTGAGAAGGAAATACTGATGCGTTCTCTGAAAGAGCAGGAGGCTGAGCTTGCTAACCTGCGCCAGGCCGCTCAGCTGCACCAGACCACGCTGCAGCAGGAGAGAGACAAATACCAGAGAGAGATTGACTCCCTGAAGCGCCAACTACAGGAAAAACTACAGCgggagcaggagcagcagctggAAATCGCTCAGCTGAAACGAGAGTTAGCGGAGAGGAGAGCAGAAGTGACAAGTGCTCAAAGTGCTCTTCACAGCAAGGAGACGGCAGGACATGAGATGAGCAGTATGTTGGTGGGGCTGCAGGCTCAAAAGGAAACACTGATGCGTTCTCTGAAAGAGCAGGAGGCTGAGCTCGCTAACCTGCGCCAGGCCGCTCAGCTGCACCAGACCACGCtgcagcaggagagagagaggacccAGAGAGAGATGAGTTCCTTACAGAGCCAACTACAGGCCAAGttgaGCCGGGAGTCGGAGCTCCAGCAGAAGCTGCAGGAGGAGCAGTTTTGCTTATTGCAGTGTGCTGTGGTGGAGGCAGAGGGCATCATACTAGACGCTCTGGCCAAAGTGGACGACCCCATGCACGTGCGCTGTGTTTGCACTCCTGAGTATTTGATCAATCGGGCTGAGACCACTCTGGTGTCCATTGACAAGATGCAGCAAAGTCATGCTGGGTATTTGAGAAATCTGGATGATGCCAGTGGGCTGTTGAGATCTGTGACTCAGTTTTCCCACCTTGCAGCAGACACTATTGTTAATGGATCTGCTGCGTCCCACTCTGCACCCACTGACCAAGCTGACAGGCTGACAGATAACTGCAGAGACTGTGCCACTCACTGTCTGCAGTTCCTTAAAGAACTCAAGCTGAAGGCCACACTGCAGAGAGCCGACCCGAGCGCCATCCGCTATACGGTCCAGCGCATCCTCAACCAAGccactGATTTACGACGCAATGACGCAGATATTCAGAAAGCAGAGCTGGCAGATATGGTGGATAAAGAGATGGCTGCCACGTCCACTGCTATTGAGGATGCTGTTCTGAGGATGGAAGAAATATTGAGCCAAGCAAGAAGAGATACATCAGGATTAAAACTGGAAGTTAACCAAAGCATCCTTGGTTCCTGCTCTGATCTGATGAAAGCCATACACATGTTGGTCACAGCGGCCACAGATTTACAGAAGGACATTGTGGAAAGTGGTCGGGGAGCTGGCTCTGTGAAAGACTTCTATGCCAAGAATTCTTGCTGGACTGAGGGGCTCATCTCTGCCTCCAAGGCTGTAGGATGGGGAGCCACACAGATGGTTGAGTCTGCTGACAAAGTAGTGACAGACCGAGGCAAATATGAGGAACTGATAGTGTGCTCCCACGAGATTGCTGCCAGCACTGCCCAGCTCGTAGCCGCCTCTaagGTAAAGGCAGATCGAAGTAATAAGAAACTTAATACACTGCTGCAAGCCTCACGACATGTAAATGATATGGCAGCGGTCGTTGTGACTTCAACAAAAGCTGGACAGATGCAAATCGAAGATAAGGATCCGATGGATTTCTCAGGCATGTCTCTGATCAAGCTGAAGACAGAGGAAATGGAAACTCAGGTGAAAGTGTTGGAGCTGGAGAATCAGTTGTCCAGTGAACGCCAGCGGCTGGGCGAGCTAAGGAAAAAGCACTATGAGTTGGCTGGAGTTCCTCTTGATCAGACCGTAGAGAGGGATTTTGATGGGTTTGTCAGCGTTTTACCACCAGTGATGCCTGAGCCACCGCTGCCTGAACCACCCAAACTTGAGCCGCCTAAAAACCCACCATCTAAAAAACCTTCCATTTTCCAGAAATCTGGCAGTCTCCTTAAAAATAAGTTTAGGTGAAGCCTTTGAGAAGAATGTACAGTGGAAAAGACCATttgaatttaacattttttggccTTTTGtataaatcattcatttattctcatttagtaacggctttatcctggttattCGCAATGAATCCGGAGTCTAACGCAGgagcactgggtgtgaggcgggaatacaccttggatgagACGGCattccatcacaggacaccatgcatgcacatttacacacttattcacacctaggggcaatttagagtcacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312899 lncRNA upstream 172763 5922310 ~ 5926306 (+) True G264056
TU312835 lncRNA upstream 372124 5667582 ~ 5726945 (+) True G264009
TU312825 lncRNA upstream 394238 5702843 ~ 5704831 (+) True G264002
TU312815 lncRNA upstream 525789 5572964 ~ 5573280 (+) True G263993
TU312774 lncRNA upstream 893650 5204995 ~ 5205419 (+) True G263953
TU313350 lncRNA downstream 58922 6174314 ~ 6174692 (+) True G264424
TU313337 lncRNA downstream 78682 6194074 ~ 6194681 (+) False LOC113544903
TU313352 lncRNA downstream 79536 6194928 ~ 6195142 (+) True G264426
TU313353 lncRNA downstream 92598 6207990 ~ 6209011 (+) True G264427
TU313354 lncRNA downstream 103117 6218509 ~ 6283930 (+) True G264428
XM_026943865.2 mRNA upstream 129 6090772 ~ 6098940 (+) True ccdc62
XM_034312578.1 mRNA upstream 129 6090772 ~ 6098940 (+) False ccdc62
XM_026943839.2 mRNA upstream 18643 6059834 ~ 6080426 (+) False LOC113544829
XM_026943866.2 mRNA downstream 761 6116153 ~ 6129642 (+) True rilpl1
XM_026943867.2 mRNA downstream 761 6116153 ~ 6128520 (+) False rilpl1
XM_026943868.2 mRNA downstream 762 6116154 ~ 6129642 (+) False rilpl1
XM_026943722.2 mRNA downstream 33601 6148993 ~ 6164952 (+) True sbno1
XM_026943723.2 mRNA downstream 33601 6148993 ~ 6164952 (+) False sbno1
TU313203 other upstream 87167 6008800 ~ 6011902 (+) True G264336
TU312620 other upstream 1018452 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 3281811 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 3751684 2343661 ~ 2347385 (+) True LOC117599403
XR_004579764.1 other upstream 4679634 1414504 ~ 1419435 (+) False ponzr2
TU313925 other downstream 951479 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 1000668 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 1253088 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 1253170 7368562 ~ 7368633 (+) True trnam-cau_30
trnar-ccu_7 other downstream 1253871 7369263 ~ 7369335 (+) True trnar-ccu_7

Expression Profile