RNA id: XM_026943892.2


Basic Information

Item Value
RNA id XM_026943892.2
length 1004
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC113544858
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 6165896 ~ 6168964 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACGGCCATATTTGCCGGTGCTGCTCTCTCTGCTGTAAACAAAAAGTGACTGTGAGACGGACGCTTCGCTGAATTTAgggacatttttatttctgtaatttatgaTGTCTTTAGGAATGTCTTACAAACCTAACCCCCACCAGCACATTCCGGGAACTTCTGGGAACCAAGCAGGAAACATCCCCTCTCCCTCTTCCAGCATCTCCACAGTTCAGTCATACAAGCCAATTATAAATGACTTTGGGCTGCCGTCGTTTGGATTTTCGCAGGGGCTGAATGGAACTCAAGCTCCACAGAGCAAATATGCTGAACTTCTCGCAATCATCGAAGAGCTCGGGAAAGAAATAAGGCCAACGTACGCTGGAAGTAAAAGTGCCATGGAGCGACTCAAAAGAGGTATAATTCATGCAAGAGGTCTTGTCCGGGAGTGTCTGGCAGAGACGGAAAGAAATGCACGATCTTAGCCTCTGAAGCCTGCCTCTTGTCTAAGGGCAGAAGATTTCTTCTACTACTTTTACAGAAGGGTGCTGCATGGCTTTTTTCCCATAACAGAGGGATGAAACAATCaaaaatttattcattatgtaGTGTAGTTAAAGCATGGGATGGAGGTTTTGCGATGTTATTTGTGATGAATGCAACAGGAGAGATTGAATTTGAGTGTTGCCATTTGggattttatttctcttataactcctattatatatatttttttctgacataAGAACAAGCAAGCTTATCTGCATGCAATGAGGAGATGGACCAGAGTTTGAACGTGCATGGCTTTTACAGGTTTACAGTAGGGAGGTCCTCTTAAATTTGAACAAGTGTAAGGATTTAGGTTTTCTTTAAATTGGGAGACAGTGAGGACAGTTATAGTAATGGCattgttttaggtttttttttatttattaccttgtgtaataaaatgtattttcatgTACAAAAAGGTCACTTTTTGAAATTTTGTATAAAGGTCAATAAACATGACATTTGTTGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312899 lncRNA upstream 239591 5922310 ~ 5926306 (+) True G264056
TU312835 lncRNA upstream 438952 5667582 ~ 5726945 (+) True G264009
TU312825 lncRNA upstream 461066 5702843 ~ 5704831 (+) True G264002
TU312815 lncRNA upstream 592617 5572964 ~ 5573280 (+) True G263993
TU312774 lncRNA upstream 960478 5204995 ~ 5205419 (+) True G263953
TU313350 lncRNA downstream 5350 6174314 ~ 6174692 (+) True G264424
TU313337 lncRNA downstream 25110 6194074 ~ 6194681 (+) False LOC113544903
TU313352 lncRNA downstream 25964 6194928 ~ 6195142 (+) True G264426
TU313353 lncRNA downstream 39026 6207990 ~ 6209011 (+) True G264427
TU313354 lncRNA downstream 49545 6218509 ~ 6283930 (+) True G264428
XM_026943723.2 mRNA upstream 945 6148993 ~ 6164952 (+) False sbno1
XM_026943971.2 mRNA downstream 929 6169893 ~ 6194356 (+) True LOC113544903
XM_026943972.2 mRNA downstream 929 6169893 ~ 6191088 (+) False LOC113544903
XM_034312810.1 mRNA downstream 28315 6197279 ~ 6253031 (+) True LOC113544768
XM_034312816.1 mRNA downstream 28315 6197279 ~ 6253031 (+) False LOC113544768
XM_034312814.1 mRNA downstream 28315 6197279 ~ 6253031 (+) False LOC113544768
TU313203 other upstream 153995 6008800 ~ 6011902 (+) True G264336
TU312620 other upstream 1085280 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 3348639 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 3818512 2343661 ~ 2347385 (+) True LOC117599403
XR_004579764.1 other upstream 4746462 1414504 ~ 1419435 (+) False ponzr2
TU313925 other downstream 897907 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 947096 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 1199516 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 1199598 7368562 ~ 7368633 (+) True trnam-cau_30
trnar-ccu_7 other downstream 1200299 7369263 ~ 7369335 (+) True trnar-ccu_7

Expression Profile