RNA id: XM_026943897.2


Basic Information

Item Value
RNA id XM_026943897.2
length 1193
RNA type mRNA
GC content 0.48
exon number 2
gene id nxnl2
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 5645871 ~ 5649454 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcTATGCTTTTCACAGGAAATCCCCGGATTCCACTCAGGGTGAGAGTCAGGGTGTTAGACACACTCCCGCGGGGTTTAATCCCACCTGGCAACCACCGTCCTGTCGCTTGGAGTTTCTGAAGAGCGCTGATTGGTGCTGACGAAGGTTATAATTTGCATAATGGGCGGGTCTTATAGCGAGTTTATCCGTCCTCGCGATGAAGATTAAAGTTCGTTGATCCGAGctgttactttttttctttttttttaaggaagtgGCCGGAAGTTGCTCGTTTTCCGCCTGCgtataaagtgtaaagtaatTTCCCTGGACGTTAAATAGAGGTAAAAGCCATTCTGAAGAGGTTCTGTTAACTTTCTAGGGCTTGTCATTAGTGCTGAATGAGTTGCTGAGTGACACACTGAGGTGTTTATCTTTTCTCCGGTGATGGCGGAAGTGTTCGCCGGGCGCGCGCTCCTGAATAAAGACGGAGATCTTGTAGATGCAGAAGATTCACTCCGTAATAAAGTAGTGGGTTTGTATTTCTCCGCCGGATGGTGCCCTCCGTGCCGCGACTTCACACCGGTGCTGTGTGACTTTTACACCGAGCTGGTGGAAGAGAGCGACCCTCCTGCTCAATTCGAAATCGTTTTTATATCCTCGGATAAATCCGCCGAGGACATGGCGGAATATTATCACGACCTGCACGGGGACTGGCTCGCGCTGCCTTGGACCGACCAGTACAAGCACGAGCTGAAGAAGAGGTACAACATCACAGCCGTGCCCAAGCTGGTGATCGTGAAGGAGAACGGGCAGGTGATCACGGACAAAGGCAGGAAGCAGATCCGAGACCAGGGCCTGGCCTGCTTCAGGAACTGGCTGGAAGTAGCCGAAATCTTCCAGAACTTCAACTGCTAGTGATTTGAGTCAGTTTTCTGGTGCAACGGAGCTAGTGAAGAAATGCTGCATCCCGCACTTTAACAGGGTCTGGACACTTTATAACCACgctttatacattatttttaaaggctCTTGCTACTTTGAAGTTTatttttactgcagtgttttttttatgaggATCCGTTTTCCTCAGTTTTAGGATAGtggattagtgtgtgttgttacaCTGGTACTCAGGgactgttttatgttttgcatTGTCATGGTGCTTCAGATTCCCCGGCgtttcattaaaacactgatgttttCCTGA

Function

GO: NA

KEGG:

id description
K17609 NXN; nucleoredoxin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312815 lncRNA upstream 72591 5572964 ~ 5573280 (+) True G263993
TU312774 lncRNA upstream 440452 5204995 ~ 5205419 (+) True G263953
TU312598 lncRNA upstream 620363 5023275 ~ 5025508 (+) True G263801
TU312488 lncRNA upstream 759070 4885346 ~ 4886801 (+) True G263716
TU312487 lncRNA upstream 761144 4883327 ~ 4884727 (+) True G263715
TU312835 lncRNA downstream 18128 5667582 ~ 5726945 (+) True G264009
TU312825 lncRNA downstream 53389 5702843 ~ 5704831 (+) True G264002
TU312899 lncRNA downstream 272856 5922310 ~ 5926306 (+) True G264056
TU313350 lncRNA downstream 524860 6174314 ~ 6174692 (+) True G264424
TU313337 lncRNA downstream 544620 6194074 ~ 6194681 (+) False LOC113544903
XM_026943935.2 mRNA upstream 6290 5627430 ~ 5639581 (+) False LOC113544883
XM_034312417.1 mRNA upstream 6290 5627787 ~ 5639581 (+) False LOC113544883
XM_026943936.2 mRNA upstream 6290 5627850 ~ 5639581 (+) True LOC113544883
XM_034312414.1 mRNA upstream 19615 5613981 ~ 5626256 (+) False zmp:0000001301
XM_034312413.1 mRNA upstream 20954 5610182 ~ 5624917 (+) False zmp:0000001301
XM_026943670.2 mRNA downstream 3265 5652719 ~ 5660142 (+) True wu:fb59d01
XM_034312602.1 mRNA downstream 14630 5664084 ~ 5701178 (+) True LOC113544765
XM_034312603.1 mRNA downstream 14630 5664084 ~ 5701178 (+) False LOC113544765
XM_034312438.1 mRNA downstream 67661 5717115 ~ 5722706 (+) True setd9
XM_034312437.1 mRNA downstream 68539 5717993 ~ 5722706 (+) False setd9
TU312620 other upstream 565254 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 2828613 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 3298486 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 4226382 1414504 ~ 1419489 (+) False ponzr2
TU313203 other downstream 359346 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 1417417 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 1466606 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 1719026 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 1719108 7368562 ~ 7368633 (+) True trnam-cau_30

Expression Profile