RNA id: XM_026943903.2


Basic Information

Item Value
RNA id XM_026943903.2
length 3174
RNA type mRNA
GC content 0.46
exon number 18
gene id LOC113544866
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2698244 ~ 2711113 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTTGCATACCGTGCCGTGGATGAAGGAGATGATATTTCTCGCGAACACTTCGCtccaaaataaagcaataaaaaaaataaagtatttgtaAAGAGAATTGCTCATCAGCTCATCAGCCTGATGGTGGTTGTAAGCATCAGGAGCGCGCACAAGCGGCGGTTTGTGCTGCTGTTCCTGAGTATCACCGGGATCATCATTTACCGGCACTTCAGTGGACAACCAGAGAAGGTGCGGATCAGCAGGAAACAGGGATTAACGGTGAACTCTTCCCAGTTCACGCTGGGAGGCGAGCCGTTCCGCGTCCTCGGGGGTTCGCTTCACTACTTCCGCGTCCCTCGGGCCTACTGGAAGGATCgcatgatgaagatgaaggctTGTGGCCTCAACACTCTAACCACATACGTGCCGTGGAACCTGCACGAGTCTGAACGAGGGAACTTCCAGTTCAACGCAGGTCTGGATTTGGAGACGTTTCTCCTCCAGGCGGCTGATGTGGGTCTCTGGGTTATCCTTCATCCGGGTCCCTACGTCTCCTCAGAGCTGGACCTTGGAGGATTGCCGAGCTGGCTGTTAAGAGACAGGAAAATGAAGCTGAGGACGACGTACGCTGGCTTCACGCAGGCCGTCGAGGCTTTTTTGGACAAGCTCATTCCCAAAATGGTGCCCTTACAGttcAGGAAAGGTGGCCCTATCATTGCCGTGCAAGTGGAGCATGAATATGGGTCGTATGCAGTGGACAGGAAATATATGGCGTTTCTGAAAGAGGCCCTTGAGTCGAGGGGCATCAGTGAGCTTCTCCTCACATCAGACAGCCATGAGGGCTTAAAGAGTGGAGGAGTGAGCGGAGTTCTCAGGACTCTGAATCTGCGGAAACTAAATTACGAAGACATCAAGTATCTGGATTCTGTGCAGCCAAACAGCCCTGTTTTAATTACGGAGTACTTGACCGGACGCTTCGATGGCTGGGGAGATCTGCATCACATCTTTCCTGTAGAAGACATGGTCGCAGTGGTTAGAGAGGTTTTGCGGCGTGGCATGTCCATCAACCTGCACATGTTCCATGGAGGAACAAACTTCGGCTTCATGACCGGCGCTGTGGCAAAGCCCTCTTACAAGGCTCTAATCACGAGCTATGattATGACGCGCCTTTGTCCGAGGCCGGTGAATATACACCGAAGTACCATCTGCTGAGAGAACTCCTCAGTCGATACAGTAACGATCCTCTGCCGGAGATGCCGGCTCTGCGCTGGAAGGAAAGCTACGAGCCAGCCATCATGTACCGACACCTCTCTTTATGGGATGCTCTGCCTTTCACACAGGAGccTTTTAAATCCAGGAATCCTGTTAATATGGAGAATCTCCCCGTAAACAACAGGAACGGACAAGCATACGGATACACACTGTATGAGACCACCATCACCACCGGAGGCTTCTTAAAATCTGGAAACAACATCCGAGACAGAGCACTGGTGTTTGTGAACAGAGGCTTCATCGGCACTTTCGACTACAAGAATACAGAGTTAGCAGTTTCTGATGGGAAGgaGGCTCGAACATTGAGTTTGCTGGTGGAGAACTGCGGAAGAGTGCACTTTGGCCAGACCATGGACAATCAGCGCAAAGGGATCGTTGGAGACATTTTACTGAACAATGTGCCTCTTAGGGACTTCACAATTTACAGCCTGGATATGACACGCAGCTTTATTGACAGTTTATACAGAGCTCCGTGGAAGTCTCTCCCTCAGAAGCCAAGCTTTCCGTCATTTCTTCAGGGAAGAATTTTCGTGGATGGATATCCGAGTGACACGTTCGTTAAGCTGCCTAGCTGGAGCAAAGGCGTGATCTTCATCAACAGCCAGAACATCGGACGTTATTGGCACGTCGGCCCCCAGCAGGCGCTCTACATCCCAGGCCCTTTCCTCAACAGTGGAATCAACTTAGTCAGTTATCACAATTTGTATGGTGACAAGagcagtgtgtttttggttaTGTTTTaccatgtgcctttgttttggttttggtcctgtctcccCCCCTGTCATGTAATTGGTCTGTTActtattgtgttcacctgttgtGTGTTTAGTCCATGATTACTTTTTGTACTTATACCTtggtgtgttatgtgtgttatgCCATTGTGAAGTCTTGTCAATtgcatttctgtgctttctgaTTTTGACCCCTACCCGCTTTATTAGTTTAGGATCACAGATTATCCTTGTTTAATGCTGTTtgcctgtgtttttttccccccacttctGTCTCAAATTTGGTCACCTACCAATTCCCATCCaacagccagctctccccatcatacgacagggagggtgaaggctaataTGTGCTGTCtttgagacatgtgaagccagccagctgcATACTATCGAACTGTTGCTCGTGATGCATCACAAACAGTGTAATACACACAGAGGacagtgctatctgccctcttctgcatacgtGAGCTCACAAATGTTCACGATTGGTTAGTGTCCCTGTAATATAtgatccctcccacccagagagcatgacCAATTTTGTTCCTTTGTTCCCTTGTTGCCTTGGGAACCTCAGTGTGAAGGCAGAATGAGGACATTTTACTGAAACATGTACCTGTTTTCTCTTTAAGTAAGCACGTATACGTTTTAAATTTGTGTGACTCTGTGTTGTGCTATGGTgcctttgggtttttttgtctgttattCAAGTGTtgtaattttttcccctttccctACCACTTCCTCTGTGTTTGCTGCTTCGGTGCTTGCTAGACCACCACTGTAAATTTGTTCCTAATGACTTGCCTCAtcaaattaaaagttaaatatgtattaaaaaaaaaaaagaatttgattCCCAAAAGTCCCTCTTCAGATAACAGGTGGGTGTGGAAATAAATCAACATCAGCTTTTTGTTACAGATTTACAAACCAAACTGTTATTTCACCTAGTTAACCTGAATATACTCTCTGGAACGTAAAAACGATGTTCTTTAGGGCAAGtacattagtaaaaaaaaacagtcattttgAGCTGAATTGGAAATACGTCATGTTTGTCTTACAGATTTCTCTGGTTTATTTCAGGTCACTGTATTTGAGGAAGTGGAATCTGATTTTAAACTCCAGTTTGAAACCACTCCTGATCTGGGAATGACCGTCGACATTCAGT

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004565 beta-galactosidase activity molecular_function

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310961 lncRNA upstream 11770 2684795 ~ 2686474 (+) True G262412
TU310960 lncRNA upstream 16529 2680943 ~ 2681715 (+) True G262411
TU310957 lncRNA upstream 24483 2673541 ~ 2673761 (+) True G262408
TU310955 lncRNA upstream 25671 2670723 ~ 2672573 (+) True G262407
TU310937 lncRNA upstream 32774 2639208 ~ 2665470 (+) True G262395
TU310987 lncRNA downstream 33546 2744428 ~ 2747317 (+) True rps25
TU310996 lncRNA downstream 45725 2756607 ~ 2760152 (+) True G262440
TU310997 lncRNA downstream 46188 2757070 ~ 2792408 (+) False G262440
TU311004 lncRNA downstream 46188 2757070 ~ 2791711 (+) False G262440
TU310994 lncRNA downstream 47030 2757912 ~ 2760152 (+) False G262440
XM_026943933.2 mRNA upstream 44878 2650654 ~ 2653366 (+) True smtlb
XM_026943979.2 mRNA upstream 645008 1982153 ~ 2053236 (+) True pcdh1a
XM_026943948.2 mRNA upstream 825102 1870659 ~ 1873142 (+) True avd
XM_034312268.1 mRNA upstream 871922 1816565 ~ 1826322 (+) False fgf18b
XM_034312657.1 mRNA downstream 10468 2721350 ~ 2728418 (+) True slc37a4b
XM_026943763.2 mRNA downstream 10468 2721350 ~ 2728418 (+) False slc37a4b
XM_034312856.1 mRNA downstream 33514 2744396 ~ 2747268 (+) False rps25
XM_026943976.2 mRNA downstream 56670 2767552 ~ 2782425 (+) True igsf5a
XM_026943916.2 mRNA downstream 84609 2795491 ~ 2817263 (+) True pcp4a
XR_004579857.1 other upstream 350859 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 1278755 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 1278809 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 1461112 1205991 ~ 1237132 (+) True G261503
TU309774 other upstream 1585966 1101789 ~ 1112278 (+) True vamp2
TU311007 other downstream 84666 2795548 ~ 2817258 (+) False pcp4a
TU312620 other downstream 2366999 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 3297918 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 4355989 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 4405178 7116060 ~ 7118616 (+) False ddx55

Expression Profile