RNA id: XM_026943919.2


Basic Information

Item Value
RNA id XM_026943919.2
length 3519
RNA type mRNA
GC content 0.48
exon number 13
gene id bmpr1bb
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 4496472 ~ 4568363 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCGCGCGAGACCCACAGTTGaggaaagcaaagcaaagcaaaggaAAGGAAAGCGAGCGCTGCTTGACTTTGGAAGAAGCTCCTGAACAACTGAACTCGAGTCTGGCACTTCTGATTCAGCTCCGTCCCCGCTGAACGCAATGTCCTGTAGTGTGTCTAATGTTGCGTCCTGCCGGTCCGCGAGCTGAGGAAAAGCTGTTGAGACAGGCGCGTGCTGAGATGTCCTGCAGCTTGTTGCCCCGGCCGAGGCTCCCATAATTCAGTCAGGTGCTTGGCTTTGCCCTCAGATGTGCCATTGTGTGGACTAAGGCCATCAGTGTGGAGTAGCAGAGGAGACAGTGCAGCGGGTGTGTGTGGCGGGCAGAGTTTTGGCTGGAGACGCACACACTCATGCCCCGGTTGTTGGAGCCGGTTGCTGAAGGCTCTTTGATGGCccggctgctgctgctggtgtttcttctttttctggtGGGATTCAGCTCTAACTTCACTCATGCGAACGTGCTAGACACAATGTTGTTGAGGAATTCTGGGAAGGTGACGCTGGATAGCCGAAAGGAGGACAGTAGGAGCTCAGTGCCTGTGGTTCCTGAGAGGACACTGTGGTGCCACTGTTACCACCACTGTCCCGAGGACTCCGTCAACAACACCTGCAGAACTGATGGCTACTGCTTCACCatggtggaggaggaagagggcgGCCCCCCGACGCTCACCTCAGGCTGTTTGGGATTTGTGGGCTCTGAATTTCAGTGCAGGGATACAGGGAACTCTCGTTTGAGGAGGGCACTGGAGTGCTGCACTGACCAGGACTACTGCAACCGAGACCTTCACCCAACCCTGCCTCCAATTAACACCCCTAACTACGTGGACAACAGCATCCACCAGATGGCTCTGTTCATCTCTGTAGCAGTGTGCAGCATTATCCTCATCTTTATCATTGTGTTCTGTTACTTCAGGTACAAGCGTCAGGAGCTGAGGCCCAGGTATACTATTGGTCTGGAGCACGACGAGACATACATCCCTCCAGGAGAGTCTCTGAAGGACCTGATTGAGCAGTCGCAGAGTTCAGGCAGTGGCTCAGGACTCCCCCTTCTGGTGCAGCGCACCATAGCTAAGCAGATCCAGATGGTGAAGCAGATCGGAAAGGGACGCTACGGGGAGGTGTGGATGGGCCGCTGGAGAGGCGAGAAGGTGGCTGTCAAGGTGTTCTTCACCACTGAGGAGGCCAGCTGGTTCCGAGAGACCGAGATTTACCAGACTGTCCTCATGAGGCATGAGAATATACTAGGCTTCATTGCGGCAGACATTAAGGGAACAGGTTCATGGACGCAGCTCTACTTGATCACGGACTACCACGAGAGCGGCTCTCTCTACGACTACCTCAAATCCACCACGCTGGATACACGGGCACTGCTGCGCCTGGCGTACTCGGCCGTCTCAGGGCTCTGCCACCTGCACACTGAGATCTTCGGCACACAGGGCAAGCCGGCCATCGCCCACCGCGACCTCAAGAGTAAGAACATTCTGGTGAAGAAGAATGGCACGTGCTGCATCGCCGACCTCGGCTTAGCCGTCAAGTTCATCAGTGATACCAATGAGGTGGACATTCCTCCTAACACAAGAGTGGGCACCAAGCGCTACATGCCCCCAGAGGTACTGGACGAAACCCTGAACCGCAACCACTTTCAGTCCTACATCATGGCTGACATGTACAGCTTCGGCCTGATCCTGTGGGAGATTGCCAGGAGATGTGTGTCAGGAGGAATTGTGGAGGAGTATCAGTTGCCTTACCATGACCAGGTACCCACAGACCCGTCCTATGAGGATATGAGAGAAGTGGTGTGTATAAAGAGACAGCGGCCCTCTTTTGCCAACCGCTGGACCAGCGATGAGtgcctGAGGCAGATGGGCAAGCTGATGAGCGAATGCTGGGCACACAACCCAGGCTCCCGCCTCACCGCCCTCAGGGTGAAGAAAACTCTGGCCAAAATGTCCGAGTCGCAGGACATTAAACTGTGAGGGACGCTCAGACCGCTCCAACAGACTCAGAGGGAGGTGGTGGAGGTAGAGTCAGCTGTCCCACTCCTCTCCGCTCCAAGTTGAGCGACAGGCCCCCAGCGGCCCCATTCTGCTTTCTGTGAAAGCTCCCAGCCAGCAGAGCACAGGACAGAGTGCGCCCCCTGCTGGTGCACACCAGAGAGCGCCTCCTCACATGCTGACACCCAGGATAGAGGGGGCAGGGAGCAACGGCCATCACGCCATCACCTACAgccttttatttaatgtcacgCCTTTCTGCTATGGTtctgttggcttttttttttttttttttttcgttaatTTAATGCTGTTTTATCATTTTCAATGAAAGGTAAGATATGCTTCAAtgaaaaaggtttaaaaaaaatctaagtgcATAAAATAATTTCCTCTATTCTTGTCCTTCCATTTCACTGATGATAACGAAAGGGGTACGGCAGAGATCATATCACAGTACTTGAAAAcgtttatataaatgtttagaacatatatatttgtatatatatccTTGCGTTTCATGTGACGTCACACTGTATAATCGCTGCCGTTTTGAGGACAGAACAGGGGACTGCATCATTCAGTATCCAATACACTTCACTACATACAATACTGATATCGACTTACCTTCCTTTTTATAACAAATTCTAGAGAAACACCCTGCGATCCTTTACCCTCCAGGACACTCAGATTCTGTGCTCTTCAAGGTGCCTCAGAATAGCGAGAGAAATATACagagtgtctgaaaagtcaggaaccagtgGGAATAAGTtgagcaaaatccacaaaaacatgatacaggGCGTAAGGGTGAACACATggagcatatgttgtaaataataaatataaaattaaatgtatgtaattttactctcattggttcctgactttttggacaccCTGTGTATCAGGAAAACACAAATTTGGACATTTTTCTGCCTGTCTATTTTATTGGCTTTGTCAAAGTACTGTTTATGATCTTTCAAAGTATGGTGAGTAATTTTAGCCTTACCTCTAGTTATGTTTTCTTACTACAGCCAAGCCAGAAATTCAGTCCCAAATATGGACAGAAAAATGACATGACTAAAACGCAAGGATATATATGTTTGCAAAAATATAGTGCTGGATTTAAAAAACTCTGAGACTGTACACTCAACTACTGTGAGTAACAGTGGAGTTGGTCAGTATTATGAAGGTATGACCATGTGTGCGCTAGTTCAGTGTAAATGTATATTGTGAtgcagtttattttaatattgattattatattgcccagccctataCTTTGATTGTGAGTAATTAAAGTAAAGATGCAGACGAGACCTACtgtaggcatttttttttttatctttcaggCCATTTGTGTTTGCCCTGTACATAACTGTAACCcaaaatatgaatgtaaatagTGATATTGAAATGTATTGTTAATTATGGATTGAATaagtaaaatgtttgttttcttgtgttTCTCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312167 lncRNA upstream 210266 4285977 ~ 4286206 (+) True G263439
TU311683 lncRNA upstream 310218 4185759 ~ 4186254 (+) True G263025
TU311586 lncRNA upstream 703965 3790141 ~ 3792507 (+) True G262946
TU311526 lncRNA upstream 796895 3695051 ~ 3699577 (+) True G262894
TU311498 lncRNA upstream 829029 3665524 ~ 3667443 (+) True G262872
TU312366 lncRNA downstream 49703 4618066 ~ 4621490 (+) True G263612
TU312395 lncRNA downstream 153183 4721546 ~ 4775709 (+) True G263634
TU312498 lncRNA downstream 307882 4876245 ~ 4876505 (+) True G263724
TU312487 lncRNA downstream 314964 4883327 ~ 4884727 (+) True G263715
TU312488 lncRNA downstream 316983 4885346 ~ 4886801 (+) True G263716
XM_026943713.2 mRNA upstream 2680 4432696 ~ 4493792 (+) True pdlim5b
XM_026943714.2 mRNA upstream 2680 4432696 ~ 4493792 (+) False pdlim5b
XM_034312718.1 mRNA upstream 70354 4415574 ~ 4426118 (+) True opn4xa
XM_026943830.2 mRNA downstream 273718 4842081 ~ 4864137 (+) True glis3
XM_026943832.2 mRNA downstream 297205 4865568 ~ 4883273 (+) True rfx3
XM_026943834.2 mRNA downstream 297205 4865568 ~ 4883273 (+) False rfx3
XM_026943833.2 mRNA downstream 297205 4865568 ~ 4883273 (+) False rfx3
XM_026943728.2 mRNA downstream 426343 4994706 ~ 5016446 (+) True LOC113544783
TU311007 other upstream 1679214 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 2149087 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 3076983 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 3077037 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 3259340 1205991 ~ 1237132 (+) True G261503
TU312620 other downstream 509518 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 1440437 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 2498508 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 2547697 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 2800117 7368480 ~ 7368552 (+) True trnar-ccu_6

Expression Profile