RNA id: XM_026943924.2


Basic Information

Item Value
RNA id XM_026943924.2
length 2350
RNA type mRNA
GC content 0.40
exon number 2
gene id pnx
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 5776736 ~ 5781428 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTTGCAAATAACGACAAGGGTCGTAACAAAAAAACTACACGCTCTTTAAGAAAAGGGGCACATTTTAACCAGATGCGGGGTAATAAACGGCTGGGGCAGTGTTACCCTGCTGAGAAGTGAGCATTTGCATGTTAAAGtatgagagatgtgtgtgttgagaggGGGGAGGGCTGTTTATAATAATGACAAGAGGGTTTATGCATTCGGGAAGCAGGGGTTTGGGTTTGGGATTTGTCCAAGTCTagtcttttaaaatgttaattttatacaCGCGCGAGACTCGTGTGTTCCGCCAGTATAAATGCGCGAGGATTGGTCAACTTGAAAAGGGCGAGGACAAGCACGGCTTCTCTGTCACTCCTCACTTCAGCCTTGAGGTCTGACATTTCCCGAGTTAGTGACTGCAAGTGTCCGTGAATATGCagcaagaaaccagaaaacctcaGCggatttcttctttttccatcGCCGACATCCTGGATCCCTCAAAGTTCACAGGAAGGCATCGGGATGCGCAAAGCGACAAACTTTCCGACTACAGGAACAAGAGAAGCTGCGACGAATTATCAGGTGATGAAAGTGCTGAGGGGTCAGATGAAGTTTCACCAGCTTCAGAAGCGAAGGAGAGCCCTCatatcagaggtaaagctaaaATCAAGGGGCGGCGTATGCGCACGGCGTTCACTCTGGAGCAGCTGCACGTGCTCGAGCGCAGCTTCCAGAGCAGCCACTATCTGTCCGTGTTTGAGCGCCACGTCATCGCCAAGGCTCTGGAGCTGTCCGAGACACAGGTTAAGATCTGGTTTCAGAACAGACGCACCAAGTGGAAGAAGGAGCAAGAGGGACGAGAGCTGGAGGAGCTATACCAGTGCACCACAATAGCACCGGTGGTTGTACCGACCACGCTGCCACTCGGTACCACCTCCTGCAACAGGTCGAGTCCGCTGCATTTCTACTCGGCACGGAACCTTCTGACCACTTATCCCACACTTGCACTGCTCTGAGGCCAGATTCGACTCACAAACGACTCGGTTCCTTTTCATCGACTctttgaattgattttttttttattatttttaaaaagactgaAGTGAAACGATTCAAATCGGACATTTTGGCAATTTATTTGctccttttcattttattctgattatgtATTTCATTGTTCGCCATGTTCTAGGCTAACACGCAAAAAAAACATGGGTTTACATGGTGTGTATTATTAGCAGTTAGCATTCAAACTAGGCCTTAGGTCTTAGTTAGCATTCAAACTAGGTCTAAGACAAGCGTAGTCTTAGCTAGGCTAGCTAATATTACACAAACAGGAGTTTCAGCTTAGGAAAATAGCTAGTTCAGAATAACAGCAGAATACTGTAGTAGTCAAAGTAGATGCAATATAGTGAATGTGGGACACTTTTTGGTAAATGTTCCTGGAGACTATAGACCAGTAAAACTATAGCAGTTCATTTTAGGCCTCATTGAAATAAAACAGCCCCATAACCCCTCAAATATATGATAACATGGCCATATTCTTCACAAAAGCATTTTGTTCAGGTAATGTGGGACACCTGGGTTGATAAAATAGGACAATCTATTTTGctgtgaatataaaatatttaatgtcagACCTATCAAATGTTCAACTAAACCAAGTGTTATGGCAATAATTCAACTACAAATATGGCTGTTTAACCAGAACTTCCAAGAGAACTTGTGATGACCTACATAATTGAATTTTACCCGAAGTTTGATGATGATCTGTGTTGTAAATTGAACATTTGCATAGTTCAATTTCCTTAGAAACAAATCAGTAAATAAGTCGTAACGCCATGGGTAGTTTACTGAACGGGGAAAACAAATTGACTAGCCTGAGCAAGCAAGGCTGCTTAAGGTCACCTTTCTTTACAGAAAGTTCATAATGTAATCcatgtatttaaatgtaaagtaattttaagtttaatttaagTAAATTGTATGagtttaatttgcatatttatgtcactttttaattaatgtttaaatattttgcaagggagtttatacattttatttctttgtttaaaaaaaaaatttaaatgtatatttttgcaTTCAGATGTTTATTTCTCATTTGCCATCCaagctacttttaaatgacatGATTAACATCACTGCATGTGTTTTTTAGCGTATATATCCAgtgaataaaatttaataaaataataaaaacactttagcCTATGCACCTATTTAGTTCTGATATTAATAACAGAACCATTTGTGAGactagacagacagagacagagacatgcaCATATGGAGAGCAGATCATCAAGACAGACAGGATATCAAATAGTTGAGCCATTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312835 lncRNA upstream 49791 5667582 ~ 5726945 (+) True G264009
TU312825 lncRNA upstream 71905 5702843 ~ 5704831 (+) True G264002
TU312815 lncRNA upstream 203456 5572964 ~ 5573280 (+) True G263993
TU312774 lncRNA upstream 571317 5204995 ~ 5205419 (+) True G263953
TU312598 lncRNA upstream 751228 5023275 ~ 5025508 (+) True G263801
TU312899 lncRNA downstream 140882 5922310 ~ 5926306 (+) True G264056
TU313350 lncRNA downstream 392886 6174314 ~ 6174692 (+) True G264424
TU313337 lncRNA downstream 412646 6194074 ~ 6194681 (+) False LOC113544903
TU313352 lncRNA downstream 413500 6194928 ~ 6195142 (+) True G264426
TU313353 lncRNA downstream 426562 6207990 ~ 6209011 (+) True G264427
XM_026943660.2 mRNA upstream 17638 5742231 ~ 5759098 (+) True grk5
XM_026943662.2 mRNA upstream 17638 5742231 ~ 5759098 (+) False grk5
XM_034312438.1 mRNA upstream 54030 5717115 ~ 5722706 (+) True setd9
XM_034312437.1 mRNA upstream 54030 5717993 ~ 5722706 (+) False setd9
XM_026943849.2 mRNA upstream 54030 5718214 ~ 5722706 (+) False setd9
XM_026943960.2 mRNA downstream 2540 5783968 ~ 5796488 (+) True aebp1
XM_034312327.1 mRNA downstream 15713 5797141 ~ 5806497 (+) True ykt6
XM_026943749.2 mRNA downstream 15713 5797141 ~ 5806497 (+) False ykt6
XM_026943748.2 mRNA downstream 15713 5797141 ~ 5806497 (+) False ykt6
XM_026943751.2 mRNA downstream 16241 5797669 ~ 5806497 (+) False ykt6
TU312620 other upstream 696119 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 2959478 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 3429351 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 4357247 1414504 ~ 1419489 (+) False ponzr2
TU313203 other downstream 227372 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 1285443 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 1334632 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 1587052 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 1587134 7368562 ~ 7368633 (+) True trnam-cau_30

Expression Profile