RNA id: XM_026943935.2


Basic Information

Item Value
RNA id XM_026943935.2
length 3008
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC113544883
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 5627430 ~ 5639581 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGAGGGGGAAGTCTCGGCCGCAGTTGAGCTCATCAAAACGGCTGCTGCTGGATTCAGAGAGCGGGAGAGGAATTTTTCCGTAGCATGCTATAAATTCACAATTTAACATAAAGGGGGTTTTAAAAGCCcttctacaaaaataaaagactgGATAACCATCACCTGAGAGCCCTGAGTGGGCTGCTGATAACACCAGATTGGACTATTGGATTACCTGCCAGCATCTTTCCTTTTTCACCCCATTTTCACcacaccttttttttcattagacAGATTTGAATTCATATTTTCACCCTAGTTTGGCAGCAAGGCTGCTCCCCTACATCCAGATGAATGAAGACCCCATTCGGGAAGAACGCAGGCCAGAGATCCAGAGCTGATGCAGGACATGCCGGTGTCTCTGCAAatatgatgaagaagaagaattccCACAAaaaacacaaaagcagCGTGGGGCCCACCAAAGTGTCTCAACCCCGGCGAAACATAGTGGGCTGCCGCATACAGCACATCTGGAAGGAGGGCAGCGGAGCGGCGTCCCAGTGGAAGGGCACCGTGTTAGACCAAGTGCCAGTCAACCCATCCCTCTATCTAATCAAGTACGATGGGTTCGACTGCGTATATGGCCTGGAGCTGCACAAGGATGAGCGAGTGCAGGGGCTGGAAGTCCTGCCGGATCGTGTAGCTTCCACGCGCATCAGCGACGCACATCTGGCTGACACGATGATAGGCAAGGCAGTGGAGCACATGTTCGAGACGGAGGAAGGCTCGAAGGACGAATGGCGGGGCATGGTGTTGGCCCGTGCACCCATTATGAACACATGGTTTTATATCACTTATGAAAAGGACCCGGTCCTCTACATGTATCAGCTGCTCGATGACTACAAGGATGGAGACCTGAGGATCATGCCAGATTCAAACGATTCTCCCCCCGCGGAGCGAGAGCCCGGAGAGGTGGTGGACAGCCTCGTCGGCAAGCAAGTGGAGTACGCCAAAGAGGACGGCTCCAAACGGACTGGCATGGTCATACACCAGGTGGAGGCCAAGCCCTCCGTCTATTTCATCAAGTTCGATGACGACTTTCACATTTACGTGTACGACTTGGTGAAAACGTCATAGGCGGGCAAACGAGGCGGAGAAAGAAGGAGGTCCAGGTGGTAGCCCAAGAGGAGATTGACTACGGATGTGATCCACAAACTCTGCCAAAAGTCCTCACGGAACGTTTCTTTGCACCATCTTAATGGAGATGCGGTGATGGATATTTCACTGGAGCCTTGGATTGCCACTAGTTAAGTGTCTTTTTCTCGTTTCCACATGAAGGGATGGGTGTTGTTTTTGACATGTTACTCCCTAAACAAAACGTAGCTACATGTTCATATCATCATTTTTTAGTGTTGTTCATTCCTGTTGAATAACAGGCGTACATCATTTCCACTCGTGAATGGGAGGATCGGAGGTCAGCCTCCAGCTCTTACTTTCGAATCGGGCACTTTGACGACTGAGAGGCTCAGCTTTTAATCGCTGAAAATTTCATTTGCTTTGATGCAGTTCTACCATATAGCACAAAGCAGTGGGGATGAAAAGCTCAGTTACTCCCACCAAATCACACATACTACAAATTTTACTCATCTGTTTGATAGATGATGCGTATTTGTAGTTTGCTCACCAGCTTCTTTCATACTGTGTTGTATttgtccgttttttttttttttttttttttttaaatcatagaTTCCACATTATTCCATGATCTGTTGATTATTGTAAGCACTAATGTTTTTTGCCTTTACTACATATTGGAGCACTTGGTTATTTTTGAAAGATACATGATTTATCAAAATTCAGCCACTTATTTGATAGCCATTTATgagcattcaaaaaaaaaaaaaaaaaaaggtgaacagAATTGATTATATAGTTCTCGTGCTATTCAGCTATGGCTCATTGATGCCTTCgtaattgtgtttttaaatgtatttgcaaTTTGTATTTCGTGATATTCGTGGATGGCTCATAATTGTCTTAATTTTATTACgcagtatattttatttcactacaACACGGTTagattttcacttcatttgtattcatttcCGAATGAATACGCGTAGAAAAATTGGCCAAATATTCCAAGAATATTCAGTCAAGATTAACAATAGTAAGAAAACtgcaataataatttaagtatTCAGGTAGTGCATCGCAACCCATTCTAATCATATTTGGTAAATAAGTAGCTACTTACACAGTTAGccttttgagatttttttttttttttttttttaaacgctgAAATGTATGTGCCTCGCTGTAAAAGACAAGTCTGCTTTTCATATTCTTCTTTTGTACGTTCCTAATAGAGCTGTATGTATGATGACCTGAGGGGCTTTCTCTCCTCAGGAATGTTACAGAGTTTAAAGTAACGCATATACACTCGCAGCCACATGTGTTAGTCATTACctcatgcctttttttttttccctcatgagTGTCCGTTCAGCCCGCTAGATTTATcctgttatttttaaacagtgttcACTTGCAGTccgaaaaaagaaaacataaatgtatataaaaaaaattaataaggGCACGGAGAGAACTCTCTCACTTTTGATACACACAACAGCGTTATTTCAACCATAGACAGTGGAAATGATGTCACAGCTGTTTAACCGTACGACCTTAACGCTTagcttaccaaaaaaaaaagaaagaaagaaaacaacaagaacaacaacaacaacaaaaaaagaactgCTGTCCATTAAACCATTGTGATTCATATCCATTCGGGAAGACTGTAAGAAAATCGTATGCACCTTCAGTAACCATTGCAGCTTTGCGTACATTTCAGACTTGTTTCAGCAGTGGCATATGAACGTGTCATTATGCAAACGGACGCTCAGTTGGACGGTTCGGCCTTTTCTTTACACTTACCTACTGTAGTATTGTACCGTGTTTGATGTCCGGTCAACGTGGGAAATTCaaacgaagaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312815 lncRNA upstream 54150 5572964 ~ 5573280 (+) True G263993
TU312774 lncRNA upstream 422011 5204995 ~ 5205419 (+) True G263953
TU312598 lncRNA upstream 601922 5023275 ~ 5025508 (+) True G263801
TU312488 lncRNA upstream 740629 4885346 ~ 4886801 (+) True G263716
TU312487 lncRNA upstream 742703 4883327 ~ 4884727 (+) True G263715
TU312835 lncRNA downstream 28001 5667582 ~ 5726945 (+) True G264009
TU312825 lncRNA downstream 63262 5702843 ~ 5704831 (+) True G264002
TU312899 lncRNA downstream 282729 5922310 ~ 5926306 (+) True G264056
TU313350 lncRNA downstream 534733 6174314 ~ 6174692 (+) True G264424
TU313337 lncRNA downstream 554493 6194074 ~ 6194681 (+) False LOC113544903
XM_034312414.1 mRNA upstream 1174 5613981 ~ 5626256 (+) False zmp:0000001301
XM_034312413.1 mRNA upstream 2513 5610182 ~ 5624917 (+) False zmp:0000001301
XM_034312412.1 mRNA upstream 2513 5612010 ~ 5624917 (+) True zmp:0000001301
XM_034312410.1 mRNA upstream 2513 5613979 ~ 5624917 (+) False zmp:0000001301
XM_034312415.1 mRNA upstream 2513 5613979 ~ 5624917 (+) False zmp:0000001301
XM_026943897.2 mRNA downstream 6290 5645871 ~ 5649454 (+) True nxnl2
XM_026943670.2 mRNA downstream 13138 5652719 ~ 5660142 (+) True wu:fb59d01
XM_034312602.1 mRNA downstream 24503 5664084 ~ 5701178 (+) True LOC113544765
XM_034312603.1 mRNA downstream 24503 5664084 ~ 5701178 (+) False LOC113544765
XM_034312438.1 mRNA downstream 77534 5717115 ~ 5722706 (+) True setd9
TU312620 other upstream 546813 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 2810172 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 3280045 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 4207941 1414504 ~ 1419489 (+) False ponzr2
TU313203 other downstream 369219 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 1427290 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 1476479 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 1728899 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 1728981 7368562 ~ 7368633 (+) True trnam-cau_30

Expression Profile