RNA id: XM_026943948.2


Basic Information

Item Value
RNA id XM_026943948.2
length 1434
RNA type mRNA
GC content 0.43
exon number 4
gene id avd
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1870659 ~ 1873142 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGCGCATGCGCTTTGCATCACTATGACGTGGATAGCTGCGTGTTTGTGCGTTCTTGTGTTAGGAATGTACCAGATAATTATCGGGCAAACTTTAAATCCAGACTCTGAAAGAAAAGTGTTGGGCTGTAACGTGACCGGAGAATGGCACAGTGAGCTCGGCTCGCAGCTGCAGCTCAGCGCCGCTGGACCGGAAGTGAGAGGCGTGTACCGGACGGCAGTGGAGAGCGCGCGCGGGGCGGCGGGTCCGAGCCGCGAGGCCAGAGTGGTCGGGGTGATCAGTGACGGTCCGCAGCCCACCATCGCATTTTCTGTGCTGTGGGCGAAAGGATCGTGCACTACCTGGGTGGgtcagtgtttcattttacCAGGAGGTGTTCAGGTCCTGAAAACGCTGTGGATGCTGCGCTCTGCTGCTGAGAGCTCCATGGACAACTGGGACAACACCAGgttGGGAGAGGACCAGTTCATTTGCGCACGAGGTGTGGAAAGTCTATAACGGCTCTTGGTTTATCAGCATTCTTGGGGTTCATCAGTTGATGTGTATGAAAGAATAGACGCATCCTGCTGATAGATGAGTTGACCTTTGGGTTTATCACTTCTACATCATCCCAGTTCAATAAACACAGTCCCACAGTGCAGtgcttcttatttattttcttttcttaacaCCATTTCCAGTTGAACTGctgcatttctgcatttttttttctcagagctTATTATAGGCTGGAAAGGAAACCTCTTCCACGTTTCTAATCTTAGACTGGCTGCTGTGCGGCATCCGCTTTTTATTTAGGCAGTACCTTTGTTCTCCTTCCTTTCTGTTatgtatttaatgttaaaatgagGACTGGTGTGGACTGTATcccataaatataaacacagtttCATGCTtttgtaggaaattaatcaacagtggagtggtgtgatgaagcagagttgctgttaccaccctaaggttgatttattttcctataacagcatgcactgagGTGTTTTACTCTTCTTGTACCTCTTatggtaatagtaactctgcttcattgcACCACTCTGTTactcattattttcctacatcagttttttattccttatatatagttttaactttcatttcctgtttatcaCAACTGTGCAATGTTTAAAAAGAGCTTGATTAAAATGGCGACCTCTTGTGGTGTGTTGGAGAAAAAACACGTAATAAAAGACTCAGGAAAACAAATAGCAAACTTTGCAAACACATTAAATTTGATTTAAGTTCTGTTAATCATTAGTAGTGTGGCATATAAAAATATCAGCTGGAGAAATGTTGAATGTTTGTGTAGAACAGCTTCTTAGCTGAGATTGTGTTTGAAAGTAAATACCCATATGATTCATACTAAACCtcacaaaaatacagattaacaacaacaaaaatctttCTACAAGCTATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310409 lncRNA upstream 13806 1856652 ~ 1856853 (+) True G261894
TU310350 lncRNA upstream 90100 1775490 ~ 1780559 (+) True G261848
TU310355 lncRNA upstream 102675 1763838 ~ 1767984 (+) True G261853
TU310027 lncRNA upstream 151923 1712537 ~ 1718736 (+) True G261647
TU310023 lncRNA upstream 166485 1682219 ~ 1704174 (+) False G261643
TU310477 lncRNA downstream 162110 2035252 ~ 2035465 (+) True G261960
TU310618 lncRNA downstream 324728 2197870 ~ 2198075 (+) True G262095
TU310625 lncRNA downstream 343818 2216960 ~ 2217185 (+) True G262102
TU310626 lncRNA downstream 344344 2217486 ~ 2217846 (+) True G262103
TU310731 lncRNA downstream 430198 2303340 ~ 2303551 (+) True G262201
XM_034312266.1 mRNA upstream 44337 1812599 ~ 1826322 (+) False fgf18b
XM_034312267.1 mRNA upstream 44337 1812599 ~ 1826322 (+) False fgf18b
XM_026944035.2 mRNA upstream 44337 1812699 ~ 1826322 (+) False fgf18b
XM_034312269.1 mRNA upstream 44337 1813486 ~ 1826322 (+) True fgf18b
XM_034312271.1 mRNA upstream 44337 1813486 ~ 1826322 (+) False fgf18b
XM_026943979.2 mRNA downstream 109011 1982153 ~ 2053236 (+) True pcdh1a
XM_026943933.2 mRNA downstream 777512 2650654 ~ 2653366 (+) True smtlb
XM_026943904.2 mRNA downstream 825102 2698244 ~ 2711113 (+) False LOC113544866
XM_026943903.2 mRNA downstream 825102 2698244 ~ 2710882 (+) True LOC113544866
XM_034312657.1 mRNA downstream 848208 2721350 ~ 2728418 (+) True slc37a4b
XR_004579765.1 other upstream 451170 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 451224 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 633527 1205991 ~ 1237132 (+) True G261503
TU309774 other upstream 758381 1101789 ~ 1112278 (+) True vamp2
trnal-aag_10 other upstream 771206 1099372 ~ 1099453 (+) True trnal-aag_10
XR_004579857.1 other downstream 470519 2343661 ~ 2347385 (+) True LOC117599403
TU311007 other downstream 922406 2795548 ~ 2817258 (+) False pcp4a
TU312620 other downstream 3204739 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 4135658 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 5193729 7066871 ~ 7082441 (+) True G264948

Expression Profile