RNA id: XM_034312267.1


Basic Information

Item Value
RNA id XM_034312267.1
length 3703
RNA type mRNA
GC content 0.42
exon number 5
gene id fgf18b
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1812599 ~ 1826322 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacattcacacactcactcacacctagggacagTTTAGCATAACCAGTCCAGCTACCTGTATGGTTTTGgacagtaggaggaaaccagagaacccagaggaaaccataCATACAACAGGAGAGAACATGCGACTACACAGACAAGAgtccaagctcaggatcgaaccagagacaatggagctATGTGTTCAGATTGCATTGCTGCTGTGTAGCTTCCTGCAGGTGCTAGCGGTGGATAATGTTGATTTCGGAGAGCACGTCGAGACTCAGACAGGCGCGAGAGACAGTCTGAGCAGAAAGCATCACAGGGTGTACCAGCTGTACAGCAGGACCAGCGGAAAACACGTGCAGGTGATGGGAAGGAAAATCGTCGCCACTGGAGAAGATGGGGATAAATATGCCCAGCTCGTGGTGGAGGCCGACACCTTCGGGAGTCAGGTCCGAATTCGGGGCAAAGAGACCAACTTCTACCTGTGCATGAACCGCAGGGGGAAACTGGTGGGCAGGAAAGCCAACAGTGCAAACGCTGAGTGTGTCTTCATTGAGATGGTTCTGGAGAACAACTACACTGCCTGGATGTCAGCACGTTACATTGGCTGGTACATTGGCTTCACCAAAAAGGGCCGACCTCGCAGAGGGCCGCAGACCCTCCCGAACCAGCAAGAAGTGCACTTCATGAAGCGCTTTCCGCCTGGCGAGCAGCCGAACCTGCAGCACAGCAGCTTCACCACCGTTAGCAAGAGGAACAGGAGGACGCAGCAGACCAGCGCTAGTCCTGACGCACAATCATAACATACATTTAAACCATCACTCACTTCTATAAAGGATGCTGACATGGAGGATGCTTGGGTAGGAGTCACCCTTTCCAAACCAACCAGGTGTAGGTCACTTCACTTCCAGGTGGAGGTCAAAATCAGTCCAAATCAAATGCTGTGTAATCAAAGATGGCTGGGCGTGTGTCCAGGAAATGAACTCAGAGACTCATGACTCGTGACAAGGGCACACACAGCACTGCAAGCTGAGAGAAAAGCCTCTCCAGCATCCACTGCTATTAATGACTCTCGACAGACAGTGAGTTTCAAGGATATAAAAACTCTGTGGAGGGCTCGTGTGTACATTATTCCAATCACTTATCTTCCTGGGTTAAAATAATCCTGCTTGAATTGTTAATCAATAGGACAGATGCGTAggcatgtgaaataaaacaaacagccaAATGTAGCTAATATAGTGAATTATGGAAGAAGAATCGTAGcaaaaaccaacatgaaaatCGTGATGGGATAAAAACGTGGTTTAACTGCATACTGTTGGTATGAGCTCATGCAGACATCCTGGAGtatacactcttaggaaaaaacTTACATATAGAGCCTTAAAGCAAGTGTTCTCCGGGTTTTCGCAGTCAAATAAATTTCTGCTCCTAGCATAATCCTGTTACTCTAAATTGTATTGAAATGTGTACGATAATATTTGGCCTATTTATTGCAGCCATGCAGCTTTTTATTCGCCAACAGAACGCATTCGGTCCAACTTTAAGGTTTTCGATTAATGACGAAAACTCAAATATAGACTAATAACTATAATGAGTTGTGATTTCCAGAATTGTAACAAAGGACCCCTAGATATGCTTAAGAATCCCCTGGGGGTCTCTGGGACTTATTTTGAGAACCTTACTATAAGGGATCTTCTGAGGGAGCCCTTAAATGTTCAACGACAAACCCAAGGACACAAGGTTTCCCTTTATTAGAAGCTTCTAAGTCGAGCCCACAACAATCCAGAGAACCCTTGGAGATCCTTTGGAGTGCGCTTTGTATTGCGAGTCACATTACGGTGCAGAAATGAGTATACTTAAATGTTCAAACGTAAAATTACGTTGCAAATTCAGTTATAGATATTAGAGAGAATTATAACCTCTCTAAACTCAAATCCTCATTTCTGGACCTTTAAAATATCTCATGCCTGTATTCTGGCTAATCATTTATGGAGTTTGTTGGTCTGTAAATCATTGTTGGAATGATACTGAGAAATTTTAGTTTCAGAATGTATTGCTCGAGTCCTGGACATGTAGTTAAGCCAGAATTTCCAGAATTTGGTGCATGGCTTGGACACACTTAGCTATGACTTGAGTCTCAATGAGTTGATGAGACTCAGTGAACACTGAGTGAACACAGTCTCATCAACACTGAGTGTTTGACTCTCCAACTTGTGTGCTGTTAGTAATCAGAGCTTTATCCACATATAATCAGCTGCTTAAGGGCCCTGAGCCACCAGGGAGCCCTGTAAAAATGCACGGTaaaaaattatatgtttttctaaTATCTTTTGGTGATGAAAGACAATGGTTCAGGCTTTGGCAGGGGGCGCCCTTGTGGTCTGCAGCTAAAGAggtattattattttgaacCCAAAGGTTCAAAAACATCTCTGTTAGTAATTGTTTCTTCAACATTAAATAACGTTAGTCAAAGTACGCTACCACAACTGACTGCAATTCATTAAAAACTCCAGAGTTCCGCTGAAAAATTAAATCATCAGAGGTGGCAACGTACCCCCACTGTGACAACATTTGGGATTTGACATTTACATTCAGTCGTTTGCCAGATGCTCTTCTCCAAAACAAGTTACAAAACAGACGAAAGCACAGCAATACTCTAATTCTCGAGACAAACGCCGGGCCGTAAAGTGTTAGAGAGGTCTCTCTGAAGGTGGTGATAAAAAAGGGTCAAATCTgaatctgtaaataataatgtgtataagAAGTAATTCAACAACCAGTTCAAAGAAAGTGCAGAGATAACGGCTTAAACTTGAACTCATGTAGCGGCTTATGGACTTGAATGTTGAGGATAAGATGACTTagacttgacttggacttgaCTATATACTGGTGTTCTCCAAACCAGGTCACTGACCTCCAAATTATccacattttttctctttttctctttttctctattctCAGCTCCTAAAACAACCTGAACCAAGCAAGCAAGAGTATTGTGCTATATTGGAGGGATTATATTGGGAAGCTTTGCCCATTTTTAAAGGCATGTGACCCTGACAGTATGGAAATATTCACAACTTCCATTGTCCACAGTCGGCTGTATAAGCTCGGACCCAGAACTGCAGTGTGGTACCTAAGACTAACTCTTTATACACTAATGGTCACCAgtattttatggattttttttttaagtgaccCCCACTGTTCATTTCACTAGGTCCTATTCCAACCTTTTGAAATAACCGTAAGAGCATAAGGGTAGACGatatattataggaaaataatcaactacgcATAGGATAGTTTTCCACCCAAAAATGGAAACCATTAGGTTTGTTCCAATTTCTGTAACGCTAGCTCACCTGAACTAAACTTGCATTAGCAGGTTGACATTTTTGACtagtatgtaaggaataaaacaccttgcgtcatgctgttatagaaagatAATCAATGACTGGGTGATGTGATAAAGCAGACTTACTGTTAGcaccccagagttgattattttccaataacagcatgttccaattacatttttttatttgttaaagaacctGTCATGGGTTTTATCCATAAGTTCCACAAAACTTAcattagcagctataaacaatcatttccTCATCAGCtactcttttttctctatcttgaaattaataagacaaaaaaaatgcagcttgtcatgttacgaaGA

Function

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310350 lncRNA upstream 32040 1775490 ~ 1780559 (+) True G261848
TU310355 lncRNA upstream 44615 1763838 ~ 1767984 (+) True G261853
TU310027 lncRNA upstream 93863 1712537 ~ 1718736 (+) True G261647
TU310023 lncRNA upstream 108425 1682219 ~ 1704174 (+) False G261643
TU310022 lncRNA upstream 116402 1682219 ~ 1696197 (+) True G261643
TU310409 lncRNA downstream 30330 1856652 ~ 1856853 (+) True G261894
TU310477 lncRNA downstream 208930 2035252 ~ 2035465 (+) True G261960
TU310618 lncRNA downstream 371548 2197870 ~ 2198075 (+) True G262095
TU310625 lncRNA downstream 390638 2216960 ~ 2217185 (+) True G262102
TU310626 lncRNA downstream 391164 2217486 ~ 2217846 (+) True G262103
XM_026910354.2 mRNA upstream 258910 1552268 ~ 1553689 (+) True LOC113524200
XM_034312431.1 mRNA upstream 289453 1512564 ~ 1523146 (+) True LOC113524165
XM_026910298.2 mRNA upstream 351375 1450158 ~ 1461224 (+) True tlx3b
XM_026910312.2 mRNA upstream 389134 1420371 ~ 1423465 (+) True LOC113524161
XM_026910309.2 mRNA upstream 393737 1414504 ~ 1418862 (+) False ponzr2
XM_026943948.2 mRNA downstream 44337 1870659 ~ 1873142 (+) True avd
XM_026943979.2 mRNA downstream 155831 1982153 ~ 2053236 (+) True pcdh1a
XM_026943933.2 mRNA downstream 824332 2650654 ~ 2653366 (+) True smtlb
XM_026943904.2 mRNA downstream 871922 2698244 ~ 2711113 (+) False LOC113544866
XM_026943903.2 mRNA downstream 871922 2698244 ~ 2710882 (+) True LOC113544866
XR_004579765.1 other upstream 393110 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 393164 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 575467 1205991 ~ 1237132 (+) True G261503
TU309774 other upstream 700321 1101789 ~ 1112278 (+) True vamp2
trnal-aag_10 other upstream 713146 1099372 ~ 1099453 (+) True trnal-aag_10
XR_004579857.1 other downstream 517339 2343661 ~ 2347385 (+) True LOC117599403
TU311007 other downstream 969226 2795548 ~ 2817258 (+) False pcp4a
TU312620 other downstream 3251559 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 4182478 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 5240549 7066871 ~ 7082441 (+) True G264948

Expression Profile