RNA id: XR_004579762.1


Basic Information

Item Value
RNA id XR_004579762.1
length 2014
RNA type misc_RNA
GC content 0.40
exon number 6
gene id LOC113543674
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 9419665 ~ 9424855 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATCATTATTACCGTCAACCATGTCTGTCTGGCGCATTAACTGGACTATGATGTTTTCTGCCATCTGCAGCTAAggacattgtttaaaaaaaaaacagtatgtccACAATGACAGCAGTGCTAACTTTTTCCAGATATGTAAAGTACTGCTGGAAGAATTTCCCAAGATGCGAGATTTGCTTGGTGGTTGGCTGCTTAAAAAAAGCTTCAGGCAATGCATGCAGCACTGTGCTGTTTGAGGGCAAACCTGACCACCTAATCGCTTCCATCTCCCAAGTGTTAGAGCAGAATGAGATGATTCTCATGGCAGGGAGAATGATAGGCCATTCTTTCCTTCATGGTGGCCCTCGTCTGACAGGTGTTAGCCCAGCAGTTCTTCATGTGCTGTTAGGTGATACACTCCAGACAGCCACCATCACCATTGAAGATGTGGCGGACATAGACATCAAGGAGACCATAAGACTGCTTTATGAAGATGGAGAATCAGACAGGAAGGGAGATGAATGCAAGAACCAATACAGTGCACTCATTGAGGATCAGAGGGCAGCTGTAAATGAGTTGGCACTGGCATGGGACCTCCCTGTATTAATGGAAACCAACAGCACCTGGCTTCTTCATAATCTACCTCAGCATGCACAACACTCCTGGTTACTACTGCAGACACCTAGTTCTAACTGGAGTTTTTCTTGTTGCGTTTATACAACTGAAAAAGGCTTAGCGGTGTGCTTGGGCGAAACTCATGCCAACTGAAGCAGCTCAAGCAGGGATGGAAGGAATCATTGATTTGGCCACCGTTGGAATCTCAACCTGACACAGTGGCATCAGATTTTTTAGGTTGTTCTAGACCAAATCAAATGGCCTGAAGAAGGAGGGTTGGAGGATGATGTCGATGGGTGCTTAGTCAACTCTACATGCAGAATTATGGGGTACTTGCGTCAACGAGTGAAAATAGATaaaatgcatattaatattGCATATTGCATATTGATATTGCATAGATAATGCATATAGATATTACATTCCCTCAGTCCATCCAATGGTTTCCATTTTTGGTGTTACACAaagaattttttgtttttctttttcttttttcaccatTTCCCTTAATGAGGATTATGTAAAGACACATAATGAAGGACCTTAAGTTATCATGGTTCACTGAAAAATTTCACTGGAGTATTTAGATTTTGAAGAAACTTTGTTGTAAGCTATTTCTTTGTGGCAGTGGCCTATTGCCACTTTTCGAGATGGTTCGTTGCCTATTTGAGTATATAACATAATGCATGTAGAAATAACAGTAATTGTAAGACCTGTTCCTCTGCCAACATATGAGCCCATTAATACAAATGTGTCAGCTATGATAGAAAAAATGTGTACACTATAGATGGCTTTTAACCTTAACATGTTAGCAAAGTAGCACAACTACTGTAGCATGTAGTTACTCATTTGTCTCAGTTTCCAATTCTTTGAGAAATATTCAATTCTTTGAGAAAGCATATTGTGCTTTGACTCTTTTTACTGTCAGTGTCCCAAGAACAGCTGAAACAGCTTGTTAATTTCTGGGTTGGATGGGAGATACCAGTGGATGACATGGAAGTGGAGATGGTGCAAGCGGAACATCCCACTTCACATGCTTCCACACCCTGTGCTTGACTGGTAATTAGTTACTGAGAATTTAGCTTTCATTTACAGAACTGGATCACCACAAATGACAGAGGGATTGTTGCAGAGTACTCAGAGGTGTACTACAGAGTAGTAGTAGACCTAATGAAAGAATTCTATGAAAAACAGTACTCTGAATTCATGAGTTATCTcttgttattttatgttttccttTGAATTGGGGCTTTACATACAGTCAAGTGTCAAATTTCAACATTCTCAAAGCACATGAGGCATGCTCAAAAACCTATTGTATAATTAAAAGAAGAATCTATGCATGTTGTTCAGTTTTCCAGTGTCCCAAGATGTTGAAATAGTGGCTTGTATTGATATGGTTTGTTGTTTCATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315385 lncRNA upstream 17750 9401931 ~ 9402718 (+) True G266159
TU315387 lncRNA upstream 18652 9401288 ~ 9401816 (+) True G266160
TU315388 lncRNA upstream 18758 9401288 ~ 9401710 (+) False G266160
TU315390 lncRNA upstream 83380 9336704 ~ 9337088 (+) True G266162
TU315359 lncRNA upstream 156385 9257118 ~ 9264083 (+) False LOC113534874
TU315412 lncRNA downstream 22150 9447005 ~ 9447268 (+) True G266184
TU315413 lncRNA downstream 23217 9448072 ~ 9448341 (+) True G266185
TU315494 lncRNA downstream 71383 9496238 ~ 9496886 (+) True G266260
TU315527 lncRNA downstream 106514 9531369 ~ 9531778 (+) True G266279
TU315530 lncRNA downstream 114227 9539082 ~ 9539299 (+) True G266282
XM_026941931.2 mRNA upstream 20162 9365347 ~ 9400306 (+) False uspl1
XM_034312843.1 mRNA upstream 20162 9365350 ~ 9400306 (+) False uspl1
XM_034312842.1 mRNA upstream 20162 9365362 ~ 9400306 (+) False uspl1
XM_026941932.2 mRNA upstream 20162 9375745 ~ 9400306 (+) True uspl1
XM_026927841.2 mRNA upstream 156357 9256943 ~ 9264111 (+) True LOC113534874
XM_026942076.2 mRNA downstream 8965 9433820 ~ 9441067 (+) False alox5ap
XM_026942075.2 mRNA downstream 8965 9433820 ~ 9441067 (+) True alox5ap
XM_026942072.2 mRNA downstream 8965 9433820 ~ 9441067 (+) False alox5ap
XM_026942074.2 mRNA downstream 8965 9433820 ~ 9441067 (+) False alox5ap
XM_026942073.2 mRNA downstream 8965 9433820 ~ 9441067 (+) False alox5ap
TU315389 other upstream 84178 9335801 ~ 9336290 (+) True G266161
TU314948 other upstream 750671 8668814 ~ 8669797 (+) True G265807
TU314836 other upstream 780740 8633635 ~ 8639728 (+) True G265696
XR_004579838.1 other upstream 1066627 8333618 ~ 8353841 (+) True LOC113544929
TU314760 other upstream 1066653 8333502 ~ 8353815 (+) False LOC113544929
XR_004579824.1 other downstream 279505 9704360 ~ 9754590 (+) False dclk1a
TU316249 other downstream 1144173 10569028 ~ 10570705 (+) True G266868
XR_004579830.1 other downstream 3891083 13315938 ~ 13316216 (+) True LOC113543571
XR_004579771.1 other downstream 5337458 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 7200054 16624909 ~ 16624980 (+) True trnam-cau_35

Expression Profile