RNA id: XM_034312317.1


Basic Information

Item Value
RNA id XM_034312317.1
length 2319
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC113543443
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 11337851 ~ 11345580 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTAACACTGCGTACGTTTTctacatgaaaaagaaaagtcagCTGTGTTTCATTAGTTCAGCAATGGCTATTATCTTCCTCGTAATGTTTGTGATGTATAGCACCTTAAATTCCCACTATGTAGCATCAGGACGTAAAAGGGACTTCAGTATTGTGGGGAGAACCCTCTACAAGCTGGATGTCTCCTGGCCCAAATATTCAGAACATTTCACTGGAGAGGTTTTTGGAGTGGCTGTGGACCATCTGGCCGGCGTAGTATACGTTGCACAGAGAGGTGAGAATATCCCCAAAGTGCTGGTGTTTAGCACAGATGGAGACTTCCTGCAAGCCTGGAACACCAGCACACTAGAGATGCCACATGGCATTTTCCTGGCCAACGCTTCGAGTGCCCCCTCTGTGTGGATAACTGATGTGGGGAATGGGCCTTATGGACACACTATAAAGCAGTATTCTCCCTCGGGGAAGCTGCTGCAGGTGCTGGGAACAGCAGGGAAAGCCGGCTCTGGTCTCACTCCACTACAATTTGACCAGCCTGCTGAGATTTTCATCCACGACTCCACCAGAGAGATTTACATTgtggatggagatggaggaaTGAACAACCGGCTCATCAAACTGTCCCAAGGTACCTTGCAGATGGTGTGGATGCATGGTGAGAAAGGTGAGGGACCCTCGCAGTTCTACATCCCTCACAGTGTGGCTGTTGATAACTTTCAGAGGGTGTGGGTTGCAGACCGAGGAAATAAGCGGATTCAGGTGTTTAACTCAGTGACAGGGGACTGGCTGGGCTCATGGGGAAGCTGCTTCACAGACGATGCACCCTACTCCGTGAGGCTCACCCCTGACCAGAAGTACCTTGTGGTTGCACAGTTAAACACTAACCGTGTCACTCTGCTGGAGGCTCCACCTGTGGGAATTATTGGCCAGTGCAAAGTGGTGAGTTCCATCCAGCTGGCTGACGACATTAAACCTCACCTGGTGGACTTGGATCAGAAAACCGGAGTGCTTTACGTGGCAGAAATCGGAGCTCAGCAGGCTCAGAAGTTTGTACCGATCACATTCAGGAATAATGTCCTTTAAATCGGTGACTTCACCTGCTCAGAGTGAGATGTTTTGAAGGAAATACAAGATAATTTAAACTTGGCATCATTTGGATTAACATTTGATAAAGGAGTAAACCCTTATATCATATTTGGGTTaaatattatactgtaataatatttgtaaaaaatattttccggATGCCAGATGTAAGCTGAAAAAAGTGCACTTTATTTTAGTATGAGGGATGATCAGAATACTTTGTTTGCAGTTGTATGTAATACAGGATGTCTGTGCAGGTGAATGTTTTggctggaataaaaaaaaaatcattttcaacatAAAAGTATGTATTTAAGTATGAATTCAGGCACAAAAGTGTTCTGAACTGTAAGCATAATTACAACATCTTGCTTGATGTTGAGTGCTTCCAGGTGCTTTTGAATGTGACTGTAACTGTATTTGCCATGTCTTTTTGCATGAAGCCAGTCTGTAATGCTTTACCTTGTGTTATAAcaatttaatgttattgtgcTTCTGCTGTAATTCTTGTTTGTTCTGTGAAAGTCTgtgatttgtaaaataatatggATCGACATGCCACTATATAACTTGTTTTTATCCATCTTGAAAATCACAGACTGGGCTGTCTGTAAgagacattttcttctttttttaagagttattttaaatatgttgctAGTAAATGTATGTGGGCTTGTGACCAATATTGCCTAAGGTTTATGTGTAAATGAAAATTCACATGGAGTTTACCGTCCTCAAATTTTTAAagtagttatttttatttgagaCTCTAATTATTAAGTTAGTCAACTTTTCACTATATTTTTAATGGACACTTACAGAGCTCATTACAAGGGGGCCAAatatgtgatgatgatgatgatgatgatgatgataataataataataataataataatatctattATTGTTACAAATTGTCATTGagcagttttttgtttgttttgtaggtGTTGATGTGTACATTTGTAATgtgaatcaatcaatcaactaATCAATGTAGCAAAAAAGAATCATGTTTCTACACTCAGTGTTAATGCAACTGAGTAGTTTAGATTTTTCTGTAGTGTACAAATGTAAAGGGGCAAACATGCCCAAAGTACCTAAAGTAACTGTCATTTGTCTTTACTGGAAAATAACTATTGTGggattaaatcattattttcaaaCCAAAGCTTCCTTTACGGCTGTAAATGTCAATACTCATCTGTCAATACAATGCTCAACTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU316536 lncRNA upstream 226254 11111386 ~ 11111597 (+) True G267103
TU316518 lncRNA upstream 249988 11086248 ~ 11087863 (+) True G267090
TU316497 lncRNA upstream 280830 11056612 ~ 11057021 (+) True G267070
TU316486 lncRNA upstream 295461 11042217 ~ 11042390 (+) True G267062
TU316475 lncRNA upstream 301621 11035998 ~ 11036230 (+) True G267051
TU316726 lncRNA downstream 87079 11432659 ~ 11432862 (+) True G267257
TU316789 lncRNA downstream 278794 11624374 ~ 11627972 (+) True G267314
TU316792 lncRNA downstream 304849 11650429 ~ 11652188 (+) True G267317
TU316842 lncRNA downstream 482989 11828569 ~ 11828818 (+) True G267362
TU316866 lncRNA downstream 518307 11863887 ~ 11868663 (+) True G267381
XM_026941602.2 mRNA upstream 172 11320077 ~ 11337679 (+) True ilk
XM_026941604.2 mRNA upstream 21288 11314594 ~ 11316563 (+) True timm10b
XM_026941605.2 mRNA upstream 23838 11307981 ~ 11314013 (+) True LOC113543445
XM_034312941.1 mRNA upstream 33435 11293697 ~ 11304416 (+) False si:ch1073-15f19.2
XM_034312710.1 mRNA downstream 2001 11347581 ~ 11366351 (+) False emsy
XM_034312708.1 mRNA downstream 2002 11347582 ~ 11366351 (+) True emsy
XM_034312709.1 mRNA downstream 2024 11347604 ~ 11366351 (+) False emsy
XM_026941720.2 mRNA downstream 47355 11392935 ~ 11400100 (+) True klhl35
XM_026941710.2 mRNA downstream 78969 11424549 ~ 11429838 (+) True psmg1
TU316249 other upstream 767146 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 1583261 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 1912996 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other upstream 1912996 9420468 ~ 9424855 (+) False LOC113543674
TU315389 other upstream 2001561 9335801 ~ 9336290 (+) True G266161
XR_004579830.1 other downstream 1970358 13315938 ~ 13316216 (+) True LOC113543571
XR_004579771.1 other downstream 3416733 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 5279329 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 5279820 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 5279902 16625482 ~ 16625553 (+) True trnam-cau_36

Expression Profile