Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579782.1 |
| length | 524 |
| RNA type | misc_RNA |
| GC content | 0.42 |
| exon number | 5 |
| gene id | LOC117599326 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 19825962 ~ 19830268 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579783.1 | lncRNA | upstream | 730 | 19817178 ~ 19825232 (+) | True | LOC113544143 |
| TU322531 | lncRNA | upstream | 730 | 19818467 ~ 19825232 (+) | False | G272180 |
| TU322223 | lncRNA | upstream | 329096 | 19496165 ~ 19496866 (+) | False | LOC113544004 |
| TU322222 | lncRNA | upstream | 331087 | 19489558 ~ 19494875 (+) | False | LOC113544004 |
| TU322221 | lncRNA | upstream | 341058 | 19482497 ~ 19484904 (+) | True | G271923 |
| TU322559 | lncRNA | downstream | 92767 | 19923035 ~ 19923178 (+) | False | gfra2b |
| TU322558 | lncRNA | downstream | 110778 | 19941046 ~ 19943499 (+) | False | gfra2b |
| TU322611 | lncRNA | downstream | 135859 | 19966127 ~ 20008197 (+) | True | G272246 |
| TU322615 | lncRNA | downstream | 393209 | 20223477 ~ 20226693 (+) | True | G272249 |
| TU322678 | lncRNA | downstream | 409626 | 20239894 ~ 20240346 (+) | True | G272305 |
| XM_034312420.1 | mRNA | upstream | 20167 | 19792704 ~ 19805795 (+) | True | LOC117595711 |
| XM_026942526.2 | mRNA | upstream | 39131 | 19783324 ~ 19786831 (+) | False | LOC113543969 |
| XM_026942462.2 | mRNA | upstream | 160638 | 19649463 ~ 19665324 (+) | True | LOC113543930 |
| XM_034312298.1 | mRNA | upstream | 276768 | 19540378 ~ 19549194 (+) | True | LOC113544003 |
| XM_034312834.1 | mRNA | upstream | 285686 | 19530877 ~ 19540276 (+) | True | LOC117599386 |
| XM_026942865.2 | mRNA | downstream | 23286 | 19853554 ~ 19943505 (+) | True | gfra2b |
| XM_026942564.2 | mRNA | downstream | 188098 | 20018366 ~ 20023714 (+) | True | LOC113543999 |
| XM_026942659.2 | mRNA | downstream | 220350 | 20050618 ~ 20110301 (+) | True | itga1 |
| XM_026942459.2 | mRNA | downstream | 287257 | 20117525 ~ 20123709 (+) | True | sub1a |
| XM_026942461.2 | mRNA | downstream | 288201 | 20118469 ~ 20123709 (+) | False | sub1a |
| TU322529 | other | upstream | 20167 | 19793912 ~ 19805795 (+) | True | G272180 |
| TU322530 | other | upstream | 20167 | 19793912 ~ 19805795 (+) | False | G272180 |
| TU322533 | other | upstream | 20167 | 19799022 ~ 19805795 (+) | False | G272180 |
| XR_004579787.1 | other | upstream | 25444 | 19797773 ~ 19800518 (+) | True | LOC113544133 |
| XR_003404464.2 | other | upstream | 39131 | 19782580 ~ 19786831 (+) | False | LOC113543969 |
| trnae-cuc_36 | other | downstream | 18487 | 19848755 ~ 19848826 (+) | True | trnae-cuc_36 |
| TU322750 | other | downstream | 568012 | 20398280 ~ 20398947 (+) | True | G272367 |
| TU322768 | other | downstream | 593131 | 20423399 ~ 20429143 (+) | True | G272374 |
| TU322810 | other | downstream | 710057 | 20540325 ~ 20542954 (+) | True | G272408 |
| TU323423 | other | downstream | 1645844 | 21476112 ~ 21478880 (+) | True | LOC113543995 |
