RNA id: XM_034312447.1



Basic Information


Item Value
RNA id XM_034312447.1
length 4003
RNA type mRNA
GC content 0.46
exon number 14
gene id mamdc2b
representative True

Chromosome Information


Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24698791 ~ 24718235 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


cacacacacacacacacacacactctctctctctctctttagctCTCTCTTGGTTTCTCGCTTTCATTTCTCAgactctctcttctctctggcagatagacagatagacagatagacagatagacggCTCCCATCTGAAGACCAGCTCAGTTTCGGAGAGGTCACATCAGTTCACCTGTGAAGCCGAGGCTGGGAGACACGCTGTGCTCTGGCTGAGGAGAATGGAGCTCTTCACTCAGGAGAAGATGATTCCCTACGTCTTCCTCAGCATTCTCGCGATGGCCCGAGGAAAGACGTTACCAGGCTCGTGTAGTTTTCAGGAGACGATGTGTGACTACACAGCAGATGCAGCTTTTCTCAGCTGGAACCTCAACCCTAATGATCATTTCATCACGGTGGATGCGAGCTCGCAGGGAAAAGGGGACAAAGCGGTTCTTTTGGGTCCTGATGTGGAGCTGCAGGATTGGAGCTGTCTTCGTCTCATCTATCAGCTCACCGGAGCCGGCTGGCTTCAGGTTCTCACTCGTTCAGAGGGAGAGAGTTTTGACCACACGCTCTGGTCGGCCAGCAGTCCCTCTGAGAGCTGGCTCATCGCCACCGTAGACCTGCAGAATTCAACCGAACCGTACAAgattgtgATTGAGGGTGGGAGGGGCTCGGCTGAAGGCAGCAGTGTGTCCATCTTTGAGGTCAACATTTCAGATAAATACTGCATCGaGTGTGATTTTGAGGAGTCTCACCTGTGTGGCTATGCTAGCCAGTGGAGTGGAAATGTGAACTGGTATGTGGGGAGAGGAGCTCCGAACAACCCTGCACTCAGTGAGGGACCAGGTCATTACATGTACGTGGATTCGGTTCACTCCAGGACTCTGAAGGAAGTGGCCACGCTGCTGTCGCCCATGACCTCGTCGCCCATGTCGGGCTGTTTGAGTTTTCAGTACCAGCAGGACCACGCCGAGGGTCACATGTTCTCGGTGTACAGCAGGGACCGGGCGCGGCAGTACAGGGAGCTGTGGAGAGCAGACCTGCCTGAGAGCAACCAGGTGGAGCAGGAAACCAAGACCCAGGTGTGGATTCCTGTACAGGTGACCCTGCGCGCCCCCTACCCCCTGCAGGCGTTTCAGGTTTACAAGGTTTCAGGTAGCCAGGTTTCAGggtggtttgtgtttgtgtttatgtgtttgtgtgtttgtgtgtttgtgtgggttttttcaGAGCCCGTGTTCGACCCGTCAGTGGCAGACTGTGACTTTGAGCTGGGTTTCTGTCGCTACACACAGAACACAATGGAGACTGAAATGTGGAAGCGAGTCTCAGTGCGGCCCAATGTGTACCGCGAGGGAGACCACACGACCGGGAGAGGTTCGTTCTTGTTGGCGAGTTCACGCTTCGTCATGCAGTCTGGCTCCATCAGCCGGCTGTTCGGACCTCCTCTGCCCGGGAACCAGACGTACTGCCTGAAGTTCTTCTACTCTCTCAGAGGTTTCAGTAAAGCTGAGCACACTTTAGCAGTGTATCTGTACAACAGCACCGCACAGAAACACACCCGGGTCTGGACCCCGAGTGACAGAACAAGAGACGTGTGGATTCACGTGGAGCTCAGTATCCAGACGCAGAACCACACTCAGGTGATGTTTGCAAGTACGTGTAAAAGTTTTTGGAACTGTGGTTCTGCTGCTCTCGATGACATCGGCCTCCGTCTCGGGGACTGTGAGCTACCGTTAGgttctcctctGTCAGTTCCTTCACGCTGTAACTTTGAGAACGGACTTTGTGGATTCACTCAGGAAAAAAAGCGTGACATGGCAGACTGGGTTCTGATCCGAGGCCCAACACCGACCTCCTACACTGGACCTAAAGGAGACCACACCACTGGAATGGGTCATTATTTGTACATCGAGGCCTCCCTGATGCTGCCGGGTCACAGTGCCCGCCTCCTGTCCCGCCCCCTCCGTGGTTCTAGAGCAGCTCAGTGCCTGCTCTTCTTCTACCACATGTACGGTTCTGGAACAGGTTCTCTCAGGGTTCTGCTGCGCTCGGAGCTGGAGGATGGAGACGTGGTGCTGTGGGAGAGGAGTGGAGAACACAGCGTCTCCTGGATGAGAGCGTCAGTGACCTATCAGTACGACCGTCAGCACCAGattGTATTTGAAGCCACCCGAGGGCCATCGATACTGAGCGATACTGCGATTGATGATATTAAATTTCAAAAGGGACCTTGCAAAGATGGTGGTCAGTAACTTCACCTTTCACCCTTCAGTTAGTCAGATCTGATTTACAGTGACACTCAGCaagagaagaaataaacatGGAAATTAACGTCTTAATGTCTTAACGTCTTAACGTctaaaaacagctttataaaGTTTAACCTAAGCTTTAAAGTACCTTTTACAGGTAATAATCTCTCATGTCTGCTTTTATTGACCCGGTTTCACTCTGTGTGACTTCAGCGGTGTGTTTTATGATGATTCCTCGTCACACCGTACGAGATCCTGTACAATAAACTGTGTTGTGAATTCTATAGCAGACTGTGTGACAGCGCGCGTCCGTGTCAGATTATACTGTgtaatgaagatcctctaacgatagacctgtgattaaagaccACGACTACATTCTGCTCACATCATCAATCAGCGTGATCCAGAAATCAGCTCACGCAGAAAACAGGCTCgagtaaaaacacagttttacacaacacacacagtcctgGGAGATTGACATTGTCCTATTGGTGGACACACACTTTACCGACGACTGTGTTTGGTCGCCGTGGCGCTAAATCGCCTGCTGGTGAGCGTCATGTTATGTGCTCTAAAACCGTCGATCTCAACTCTCGACCAAGATCATGTGAGAATCATGCAGTGTAATGCGGGCTTTACAGGTCGAACAAACTTTCCACCACCTCACCTGCAGTCTAACCTCTGCTCCATTATCACCACATTCCTCTACAGTAACACACGCTTCAGCTTTTCACACAaatctgctttcttttctttttctttttaataaaattaagatGTAAAAAATTAACTTTCAATAAAGATTCAGCAcattagccttttttttattcttaaagcATTTTCCAGACTTTATTCatctataaatgttaataagtaaaagaaaaaaagctaattcatacatttaatagCAGTTCTTGGATAAGCGATTGTACTTCCTAATCTTCATTCTCTACAACTCTACCAAAAATGCAGAGGCAGAACGTTTGGAGAGAGTTTTGGTGTGTTTGATTTTCAGGTCTTATCTAcagtgtttgattgacaggtttaACCTACAGTGTTTGATTGACGGGTTTAATCTAcagtgtttgattgacaggtttaATCTACagagtttgattgacaggtctaATCTACagagtttgattgacaggtctaATCTACAGTGATTGACAGGTTTAATCTACAGTGTTTGACAGGTCTAATCTAcagtgtttgattgacaggtttaATCTACAGTGTTTGACAGGTCTAATCTAcagtgtttgattgacaggtctaATCTACAGTGTTTGACAGGTCTAATCTAcagtgtttgattgacaggtctaATCTAcagtgtttgattgacaggtctaACAGTGAGAATGTGAATGGAAAGGAGTGTATTTTGATGCATGAGGACGAGAAAGTGCGATATCTCTTCTTTAGTATGGCCGAATGTAAAGACATTAAAAGTGAAATGAGAAACAGACTTCGCTTTTATATTGTAGATTGTTGAATAAGTTGTAGATTGTTGCAcctaaaaaatacaaaaataaaccgTTTCCACCTGAGTTAGAATTTATGTCTCCAATTACATGCACTTACGGAGGAACTGCAACTGTTTAAATCTGCATTCTCTAATCAACATCTGAATTCttaaaaagttttgaaaatgcttttattttttttttcctcactttgttGTAATTTCTGTCTTTGCTGCACCActtgttattatgtttttacattaaataactaataaaccgataaataga

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU325639 lncRNA downstream 2680 24694573 ~ 24696111 (-) True G274837
TU325596 lncRNA downstream 20033 24657290 ~ 24678758 (-) False G274808
TU325589 lncRNA downstream 22286 24657290 ~ 24676505 (-) True G274808
TU325597 lncRNA downstream 25729 24657290 ~ 24673062 (-) False G274808
TU325592 lncRNA downstream 40096 24596220 ~ 24658695 (-) False G274808
TU325645 lncRNA upstream 696 24718931 ~ 24719131 (-) True G274841
TU325669 lncRNA upstream 31410 24749645 ~ 24749854 (-) True G274856
TU325670 lncRNA upstream 36945 24755180 ~ 24755382 (-) True G274857
TU325671 lncRNA upstream 61884 24780119 ~ 24780386 (-) True G274858
TU325672 lncRNA upstream 62726 24780961 ~ 24781675 (-) True G274859
XM_034312446.1 mRNA downstream 939 24658808 ~ 24697852 (-) True smc5
XM_026942651.2 mRNA downstream 189231 24500862 ~ 24509560 (-) False sgtb
XM_026942652.2 mRNA downstream 189311 24500862 ~ 24509480 (-) False sgtb
XM_026942649.2 mRNA downstream 189413 24500862 ~ 24509378 (-) False sgtb
XM_026942650.2 mRNA downstream 190345 24500862 ~ 24508446 (-) True sgtb
XM_034312575.1 mRNA upstream 15313 24733548 ~ 24749451 (-) True tjp2a
XM_026911830.2 mRNA upstream 42981 24761216 ~ 24777827 (-) True pip5k1ba
XM_034312576.1 mRNA upstream 75319 24793554 ~ 24797730 (-) True actr1
XM_034312377.1 mRNA upstream 88187 24806422 ~ 24808492 (-) True zgc:86599
XM_026911816.2 mRNA upstream 92568 24810803 ~ 24844734 (-) False LOC113525332
TU325248 other downstream 397787 24297481 ~ 24301004 (-) False LOC113544170
TU325209 other downstream 445485 24251603 ~ 24253306 (-) False inip
TU325032 other downstream 835523 23861998 ~ 23863268 (-) False nrarpa
TU325027 other downstream 896507 23798359 ~ 23802284 (-) True G274342
XR_004579778.1 other downstream 3491621 21189969 ~ 21207170 (-) False LOC113544130

Expression Profile


XM_034312447.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 30.
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XM_034312447.1 Expression in each Bioproject

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XM_034312447.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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