RNA id: XM_034312448.1


Basic Information

Item Value
RNA id XM_034312448.1
length 1521
RNA type mRNA
GC content 0.67
exon number 2
gene id LOC117599334
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24872050 ~ 24873662 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCAGAGTGAAGAGGCCATTTCACCTCACAGCGCACCCCAGCCACCTCACAGCCACCTCACAGCCACCTCACACTGCACCCCAGCCACCTCACACCGCACCCCAGCCACCTCACAGCCACCTCACAGCCACCTCACACTGCACCCCAGCCACCTCACACCGCACCCCAGCCACCTCACAGCCACCTCACAGCCACCTCACAGCCACCTCACACCACACCCCAGCCACCTCCCAGCCACCTCACACCGCACCCCCAGCCACCTCACAGCCACCTCACAGCCACCTCACACCGCACCCCAGCCACCTCACACCGCACCCCAGCCACCTCCCAGCCACCTCACAGCGCACCCCAGCCATCTCACAGCCACCTCACACCGCACCCCAGCCACCTCCCAGCCACCTCCACCGCACCCCCCAGCCACCTCACAGCCACCTCCCACAGCCACCTCACAGCCACCTCACAGCCACCACCTCACACCACACCCCAGCCACCTCACAGCCACCTCCCAGCCACCTCACACACCACCCCCAGCCACCTCACACCGCACCCCAGCCACCTCACAGCCACCTCACAGCCACCTCACACAACACCCCAGCCACCTCACACCACACCCCAGCCACCTCACACCACACCTCCAGCCACCTCACAGCCACCTCACAGCACCCCAGCCACCTCACAGCCACCTCACACCCCACCCCAGCCACCTCACAGCCACCTCACAGCCACCCCCCAGCCACCCCAGCCACCTCACACCGCACCCCAGCCACCTCACACCAGCCACCTCCCAGCCACCTCACAGCCACCTCACAGCACTCCCAGCCACCTCACAGCCACCTCACACCGCACCCCAGCCACCTCCCAGCCACCTCACACCGCACCCCAGCCACCTCACAGCCACCTCCCAGCCACCTCACACTGCACCCCAGCCACCTCACACCGCACCCCAGCCACCTCACACCACACCCCAGCCACCTCACAGCCACCTCACAGCCACCTCCCCCAGCCACCTCACACCGCACCCCAGCCACCTCCCAGCCACCTCCCAGCCACCTCACACCACACCCCAGCCACCCTCACACCGCACCCCAGCCACCTCACACCACACCCCagccacctcacacacaccacctcctcACAGCCACCTCACAGCCACCTCACAGCGCACCCCAGCCACCTCACAGCCACCTCCCAGCCACCTAACAGCCACCTCACACCACACCCCAGCCACCTCACAGCACCCCAGCCACCTCACAGCCACCACCTCACAGCCACCCCCAGCCACCTCACAGCCACCTCACAGCCACCTCACAGCCACCTCACACCGCACCCCAGCCACCTCACAGCCACCTCACACCGCACCCCAGCCACCTCACAGCCACCTCACACCGCACCCCAGCCACCTCACACCGCACCCCAGCCACCTCACAGCCACCTCATACCGCACCCCAGCCACCTCACAGCCACCTCCCAGCCctgcagcttttgttttgtttatgcttattttCGATTTGCCagtctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325666 lncRNA downstream 68569 24799457 ~ 24803481 (-) True G274853
TU325672 lncRNA downstream 90375 24780961 ~ 24781675 (-) True G274859
TU325671 lncRNA downstream 91664 24780119 ~ 24780386 (-) True G274858
TU325670 lncRNA downstream 116668 24755180 ~ 24755382 (-) True G274857
TU325669 lncRNA downstream 122196 24749645 ~ 24749854 (-) True G274856
XM_026911816.2 mRNA downstream 27316 24810803 ~ 24844734 (-) False LOC113525332
XM_026911817.2 mRNA downstream 44453 24810803 ~ 24827597 (-) True LOC113525332
XM_034312377.1 mRNA downstream 63558 24806422 ~ 24808492 (-) True zgc:86599
XM_034312576.1 mRNA downstream 74320 24793554 ~ 24797730 (-) True actr1
XM_026911830.2 mRNA downstream 94223 24761216 ~ 24777827 (-) True pip5k1ba
TU325248 other downstream 571046 24297481 ~ 24301004 (-) False LOC113544170
TU325209 other downstream 618744 24251603 ~ 24253306 (-) False inip
TU325032 other downstream 1008782 23861998 ~ 23863268 (-) False nrarpa
TU325027 other downstream 1069766 23798359 ~ 23802284 (-) True G274342
XR_004579778.1 other downstream 3664880 21189969 ~ 21207170 (-) False LOC113544130

Expression Profile