RNA id: XM_034312454.1


Basic Information

Item Value
RNA id XM_034312454.1
length 2131
RNA type mRNA
GC content 0.54
exon number 10
gene id rabgef1
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 623386 ~ 636006 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagtttaaagaaaatgttctgGAAAGATCTGTAACTTTTCAGGAGCTCAGGTCAGGACAGGAACTCGgtgttagagacgTGATGAGTCAGCGGTCCGAGCGGCGAGGGATCCACGTGGACCAGTCCGAGCTGCTGTGTAAGAAAGGATGCGGTTACTATGGTAACGCGGCGTGGCAGGGGCTGTGCTCTAAGTGCTGGAGGGAGGAGTACCAGCGCGCACGACAGAAACAGATCCAGGAGGACTGGGAACTTGCCGAGAAGTTACAGAGGGAGGAGGACGCAGCGTACGCCAGCAGTCATGGCTCTCAGTCTCAGCCCTCTCTCACTGCCTTCTCCAAGTTTGAGGAGAAAAAGACCAATGAGAAAACGCGCAAAGTGACCACTGTGAAGAAGTTCTTCAGCCCGTCATCACGCAGCACCACGAAGAAAGagaaagagagggatgaggagagagagaaagagagggagagggagagagagagaggagagaaggtgCAGGGCAGGAGGGAGAGTCACGGAGAGACGCTGCTGCGAGATCTGAAGGGTATTTTTACTCACTCGTGGGAGATCGGCTCTCCGACTGAAGagAGCCACGAGGCGAAGTCCCACAGTCCGTCGTTTGTGCGTCAGTCGAGTGTGGAGACGGATCAGGTGTCGAGGGAGTTTGTGGATTTCCTGAAGAGTCTGAAACCGGGACGAGAAATTCACAAACAGAGCCGAGCCTTCGTGGAGAGCATGGgcaataaaaAGGACCTCGGTGCTGACGAGCTCTCCGAGTGTGTGCAGGATTTCTACCAGAACATGTCTGACCGTCTCCTCACTCACTTTAAAGgtTCCTCTGAGAAGGTGGAGCGAGTGATGGACCAGGTGGAGAAGTACATCATGACCCGCCTCTATAAGAGCGTGTTCTGTCCTGAGACCACTGACGATGAGAAGAAAGATCTGACTACGCAGCACAGGATCCGGGCGTTACACTGGGTGACCATCCAGATGCTGTGTGTTCCTGTGGATGAAGAAATTCCAGAAGCAGCTGATAGTGTAGTGAAGGCCATtacagATATAATCGAGATGGACTCTAAGCGTGTGCCGAGAGACAAGCTGGCCTGCATCACCAGCTGCAGCAAACACATCTTCAACGCCATCAAGGTGACGAAGAAGGAGCCGGCGTCGGCCGACGATTTCCTGCCCACGCTCATTTACATCGTGCTGAAGGCCAACCCTCCCCGCCTGCAGTCCAACATCCAGTACATCACACGCTTCTGCAACCCGAGCCGGCTGATGAGCGGAGAGGACGGCTACTACTTCACCAACCTGTGCTGTGCGGTGGCGTTTATCGAGAAGCTGGACGCTCACTCCCTCAACCTGAGCGTGGAGGATTTCGAGCGTCACATgtgcggcggcggcggcggtgGCGGTGACGTTTCCCCGCGCAGGAGATCCGAGTCGTTGTCCCCGTGGCCACTCGAGCTGCTCTCGGCTCTGCAGGAGCGTCAGCGGCAGGTTCTGGAGGAGGCGCGGGATCTGCAGGCTGAGCTCCAGCGCTGGCAGGAGGGCGTGGCCCGCGAGGTGCAGGACATCCTCGACAAATACCCACTGGAGATCAAGAGGCACGCGGCGCACGCCATCGACTCCGAGAATGACGAGAACGACAGGCTGCCTCCGCCCCTGCAGCCTCAAGTGTTCGCCGGATAGAAACCCTGAGGAGATTGAAAGAGTCAGAGTGAGTCTGTGTGAGTCAGAGTGAGTCTGATTCTTTCAGTTTCATCAGGGTGAGTCATTGTTAGTCAGTGTGAGTCAGAGTGAGTCagagtgagtcagtgtgagtgaGTCAGCGTGAGTCTGAGTGAGTTAGTGCAAGACAAAatgagtcagtgtgagtcagaGTGAGTCAGAATGAATCATTGAGAGACAAAGTGTGTCAGAGTGAGTCACTGTTAGCGTGAGTCAGAGTGTGTGAGTTAGTGTGAGACaaagtgagtcagtgtgagtcagaGTGACTCAGTAGAGtcagagtgtgtctgtgtgagtcaGACTCAGTGTGACTCAGTGTGACTTGGTGTGAGGCAGAGTGAGTCAGAGTGAGTCTGTGTGAGTCAGAGTGAGTCAGAGTGTGTGAGTTAGTGTGAGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309322 lncRNA upstream 9766 517324 ~ 615120 (+) False G261101
TU309327 lncRNA upstream 9766 517324 ~ 615120 (+) True G261101
TU309323 lncRNA upstream 9766 517685 ~ 615120 (+) False G261101
TU309324 lncRNA upstream 54708 517324 ~ 570178 (+) False G261101
TU309345 lncRNA upstream 55703 515729 ~ 569183 (+) False bcl7ba
TU309405 lncRNA downstream 23433 657405 ~ 670966 (+) False LOC117599335
XR_004579793.1 lncRNA downstream 29040 663012 ~ 684364 (+) True LOC117599335
TU309434 lncRNA downstream 71571 705543 ~ 706282 (+) True G261173
TU309437 lncRNA downstream 77452 711424 ~ 713068 (+) True G261176
TU309468 lncRNA downstream 137286 771258 ~ 773261 (+) True G261190
XM_026910326.2 mRNA upstream 3539 615830 ~ 621347 (+) True kctd7
XM_034312547.1 mRNA upstream 12336 576083 ~ 612550 (+) True cux1a
XM_034312449.1 mRNA downstream 3646 637618 ~ 655240 (+) True trim37
XM_034312450.1 mRNA downstream 3646 637618 ~ 655240 (+) False trim37
XM_034312451.1 mRNA downstream 4209 638181 ~ 655240 (+) False trim37
XM_026910347.2 mRNA downstream 82233 716205 ~ 719326 (+) True atg101
XM_026910340.2 mRNA downstream 96046 730018 ~ 743991 (+) True umodl1
TU309320 other upstream 112113 507497 ~ 512773 (+) False bcl7ba
TU309389 other upstream 138686 482435 ~ 486200 (+) False prdm15
TU309343 other upstream 144175 444767 ~ 480711 (+) True G261104
XR_004579859.1 other upstream 312900 311476 ~ 311986 (+) True LOC117599405
TU309275 other upstream 358126 256626 ~ 266760 (+) True fgf13b
TU309447 other downstream 91855 725827 ~ 727725 (+) True G261178
trnal-uag_7 other downstream 460879 1094851 ~ 1094932 (+) True trnal-uag_7
trnal-aag_10 other downstream 465400 1099372 ~ 1099453 (+) True trnal-aag_10
TU309774 other downstream 467817 1101789 ~ 1112278 (+) True vamp2
TU309863 other downstream 572019 1205991 ~ 1237132 (+) True G261503

Expression Profile