RNA id: XM_034312463.1


Basic Information

Item Value
RNA id XM_034312463.1
length 3369
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC117595648
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8200080 ~ 8217268 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCAAGTGTAAACTGGCTCATTTTATAGGTATGTCCGAGTATACCAAATCTTGCAGTCTAAGTTTTGGTGAAGGTATTCTAGATTACATTGTAGAGCTCAGGAGACTTGCAAGAGACTGTAATTATGGGGACTTTTTATCTCAAATGTTGAGGGAACATCTTGTGCGTGGAGTCAATGATGACCAAATTCAGTGTTGGTTACTTTCGGAGGCTGACTTAACCCTCTGGGGTCGACCAACGCGCTGGCGCGTTTTGTGGCATCTTCTCCTGATAACGCCGAAAAGAACTTAAATTACTCTGTCAGTTTTGATCGTACAGATAAGAGCAATACATCATTCGAATCTGTAAAGGgtctacttttatttgtatacactcataataacaacaaaatgctGTGCTTTTGtagaataaagaaaacagacaggGTGCGTTCTCTGTCTTCTCCGTCTCTGTCACCTCTCTTCACAGACCCGTAAATAAAACACCCTGAATCTCAGCGAATACTTGCCTCAAAGACATGAGAAATATATGTATAGAAAGCTTGAGttgtctacttttaaattaaacaattcaAGTCGAAAACAAATAATCTCTTTTTATGTAATCCGTATGAAAGTAAGGAGTGGTACAGTTTCTCCTGTCTCACCTCATTATCGCTAATGTGATCCCGCCTCGCAGTGAGCACGCTGTTCATATGTAAACGATCTGAGGTGAGCCAGGTAATTATGTACACGCCCCCGAGAAATGGCATAAAACGGCAAGCTTCATCACAGAATTTACTCACTTTTTTCTGCGCGTTTGGATGATGGCACGCTACACGGGTGAAGAAGCACTACGGCTGGTTCTGGACAGCGACGAAGAGATTACTTTCTCCTCAGAGGAAGAGCGCGACTCGGATGACGAGCGTTTGCATTTTGAAGAGCGAGTGGACCCAGCGAAGGATATCAGTCCTGACGAGACTGTGAATACACCACTCTCGCCTTCACCTGCATCTCACACAGGAAGTGGACGCAGacgtgagaaaaacagtgaaaaagaaCCTGTGGCAAAGAGAGCCAAAGCAGATAAGCAGCCCACTCTGTCATGGAACACAGAGACTGATGTTGACATGGCTCCACAGGCTCTGAGATTCCTGCCCACACGGCAACCTGGACCACAGCTAGACCCAAGACCCTGTGAAGCACACACTCCCATGAGTctcttcaaaatgtttttttcttcaactgcTGTGTCAACTCTGTGTCGAAACACCAATGCTCAGGCTGCCAGGGCACGTGCAAAgggccataaatataaatggacaGACGTCAGCATCAGTGAGCTGTACTGTTACATTGGGCTACTCTTCTACATGGCCATGGTGAAGTTGAGGTCCATCAGAGACTACTGGCGGCAGGATAGTGTTTTCTCTGTTCCTTTTCCTGCCACAATCATGTCAAGGGACAGATACCGCACCATTTCATGGAATCTGCACATGAGTCACCCAGATGCAGACAAGGACAATGACCGAAAGAGAGGCACAGCTGTACACGACCGTCTTTTCAGGATCAGACCCCTCATGGACACTATCCGGCATGCATGTAAGGCCATCTATCATCCAAGACAAAATTTGGCAGTGGATGAAAGAATGGTGGCATGCAAAGCAAACACAGGAATGACTCAGTACATGAAAGCCAAACCAACCAGGTGGGGCTTCAAGTTGTTTGTTCTTGTGGACTCATCAAatggatatactgtagattttgcTGTGTACACAGGAAAGAACAACTTTCCCACAGGCCATGGACTGTCATATGATGCTGTGACATCTCTGTTGGACCGTAGAGTTTTGGGCTCTGGGTACCATGTATACATGGATAATTTTTACACTAGTCCCAAGCTTCTAACAGACTTGTTTGCTTTGAAGTTTGGTGCATGTGGGACTTACAGAGACAACAGGAAGGATTGCCCTCGGAAAGCAGCTAACTCACTCACCAAAAAAATCTGCGAGGGGCTCCATCAGGTGGATTCGAGATGGACATCTTGTGTTTGTGAAATGGATGGACACACGAGAGGTGTCTGTCTGTTCCACCATCCATGCTGCTCATACAGGAGACACTGAGCAGAGGAGGGTGAAAACACAAAGGAAAATAGATACAGAAAAATGACTTGCAATAGCCTGCGGaaaaaaggaatgaataaaGAGCTAGAAAATTCAACCATTAAGCTCAAAGCATACACTGAAGAGGGACTAAATGTGCAAGGGATGACCTGGATCGTAGTGCAGCATGGATGCATAACAAAGACATTACTGATAATGTGGTGGCAGGAACAGTGCCAACCTTAAATGGCTAAGGGTGGCTGCAGTGGCTGGCCATACAAATCCATGCTGTGCACAATGTAAATCAACCACACCCCAGATCTCCCTGGAAAAGGTGTTAAAGAGGCAAAGTGAAGTCTTCAAAGATGAGCTGGGGCAGCTTAAAGGTACTACAGCCAAAATCTATGTAGCTAAGGATGCCCAGCCTAGGTAACAATGAGGAATATCTGTGGAACCTGGAGGAAGTGTTTTGCAGGCTGGAGGAAAGGGAACCCCAGCTAAAACATAACCTGTCAAGCCTGCTGGCCCCACTACATAAGGTCCTGTGACAGGAGGTTAAGTGGAGTTGGGGTGCAGAGAAGCAGAAATCCTTCAAGCAGTCCAAACTCATGAAGTCATTTCAAGTCCTAGACATGCAGTCATCTCGGGTCCCGGACCGAGACATGGTGCTGTTCAGACCACTTGAATACATACAGTGGGGATGGCCAAAACACCTACATGATCCAGCTTTTGCTACaaatgtgagcagaaaagagGAGCAGCATGCTGAACAGTCTGCTGTGGAGTGCTAGGGTCGTCAACCCAAAGCCAGGGACAGCTGCAGTGCCTCAGCAGTTACATCAAATATACCTTTatcaacacaaaaatgaaagcCCTTGCAAGAATCTACTGCTGGTGGCCAAAAATGGATATGGAAATTGAGGCACTGaTGGAGATGCCATTACACTAATGGAGGCTACCTTCAAGGTTGCTCTTTTCATCAAACCACAGCTGTCTTGCAGAACATGTGCAGAATGGCAAAACTGCCTGACCCAGAAGTGGAtagaggaggatgaaggaagGCTCCACATGAGGAATGAACTTATTCAAagatttttttgcaaattataAACAGGTGTAGAATGCCCCCAAATAATAAATGGCATGAAATAACttgtttaatttatacattttattcagttaaatgAACATTACAGAGTTGAATAATAATGTCATGAAAGCACTTGTTGaatgatatattttatttagttaaataGACATTgcaatgctagctagctaatcaactctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314656 lncRNA upstream 10281 8189180 ~ 8189799 (+) True G265544
TU314654 lncRNA upstream 12469 8175514 ~ 8187611 (+) True tmem167a
TU314652 lncRNA upstream 12469 8176666 ~ 8187611 (+) False tmem167a
TU314653 lncRNA upstream 12469 8176666 ~ 8187611 (+) False tmem167a
TU314628 lncRNA upstream 102507 8095403 ~ 8097573 (+) True G265520
TU314676 lncRNA downstream 42823 8260091 ~ 8260403 (+) True G265564
TU314677 lncRNA downstream 43248 8260516 ~ 8260754 (+) True G265565
TU314752 lncRNA downstream 82556 8299824 ~ 8302326 (+) False G265622
TU314751 lncRNA downstream 83928 8301196 ~ 8302919 (+) True G265622
TU314765 lncRNA downstream 123242 8340510 ~ 8342287 (+) True G265635
XM_026943735.1 mRNA upstream 12470 8176891 ~ 8187610 (+) False tmem167a
XM_026943629.2 mRNA upstream 255952 7937228 ~ 7944128 (+) True cetn3
XM_026943628.2 mRNA upstream 255952 7937883 ~ 7944128 (+) False cetn3
XM_026943772.2 mRNA upstream 289825 7891511 ~ 7910255 (+) True scarb1
XM_034312582.1 mRNA upstream 293317 7890041 ~ 7906763 (+) False scarb1
XM_026944007.2 mRNA downstream 112437 8329705 ~ 8353841 (+) False LOC113544929
XM_026909772.2 mRNA downstream 498161 8715429 ~ 8731985 (+) True rnft1
XM_026909767.2 mRNA downstream 855161 9072429 ~ 9076274 (+) True si:ch211-244c8.4
XM_026927880.2 mRNA downstream 917892 9135160 ~ 9151699 (+) True zdhhc20a
XM_026927881.2 mRNA downstream 917893 9135161 ~ 9151699 (+) False zdhhc20a
TU314651 other upstream 12469 8176666 ~ 8187611 (+) False tmem167a
trnam-cau_33 other upstream 829741 7370268 ~ 7370339 (+) True trnam-cau_33
trnam-cau_32 other upstream 830202 7369807 ~ 7369878 (+) True trnam-cau_32
trnam-cau_31 other upstream 830664 7369345 ~ 7369416 (+) True trnam-cau_31
trnar-ccu_7 other upstream 830745 7369263 ~ 7369335 (+) True trnar-ccu_7
XR_003404565.2 other downstream 57779 8275047 ~ 8276323 (+) True LOC113544932
XR_003404563.2 other downstream 116203 8333471 ~ 8353841 (+) False LOC113544929
XR_003404564.2 other downstream 116222 8333490 ~ 8353841 (+) False LOC113544929
TU314760 other downstream 116234 8333502 ~ 8353815 (+) False LOC113544929
XR_004579838.1 other downstream 116350 8333618 ~ 8353841 (+) True LOC113544929

Expression Profile