RNA id: XM_034312493.1


Basic Information

Item Value
RNA id XM_034312493.1
length 1800
RNA type mRNA
GC content 0.49
exon number 5
gene id fgf11b
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1360710 ~ 1387400 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCTGAACCCTCGAGGGGCTCCGAACCTCCAGTGAGCACTTTCCCCTGCTTCAGGACCAGGAGTGAGCGAGTGACCGAGCGCAGAACCTCAGGCAGAACCTCAGTCCAACCCCCCTCCCACAGTTGAGAGGGGGGGGAAGATGGCAGCTCTCGCCAGCTCTCTGATCAGACAAAAACGGGCGGTGAAGGAAGACCAGGCCAACCGACCAATCGCCAACAAGCGCAGGCCGTGCCCCAAGAGCAACAAGTCGCTTTGCCAGAAACAGATCCTCGTTCTCATCTCTAAAGTGCGACTATGTGGAGGACGAAGAGGGAGAACCGACAAAAGACCAGagcCTCAGCTAAAAGGGATTGTCACACGCCTGTACAGTCAGCACGGCTTTTACCTCCAGATGCAGCCAGATGGAACCATGGACGGCACAAGGGACGAGAGCAGCTCcttctctcagTTCAACTTGATTCCTGTGGGTCTGAGGATCGTGGCCATTCAGGGGGCGAAGACGGGGCTGTACCTGGGCATGAACAGCGACGGCTACCTCTACACCTCCgaGCACTTCAACTCAGAGTGTAAGTTTAAAGAGAGTGTGTTCGAGAACTACTATGTGACGTACTCGTCCATGCTGTACCGTCAGAGCCAGTCGGGTCGCTCGTGGTACATCGGCATCAACCGCGACGGCCAGGTCATGAAGGGCAACCGGGTGAAGAAGACCAAAGGCGCCGCCCACTTCCTTCCCAAGGTCATCGAAGTTGCCATGTATAAGGAACCTTCGCTGCACGAGCTCGAGTCCGAGCAGAGCCCGCCTCGAAAGACAGCCAAGACGTCGGACTCGCTGCAGAACGAACGCAACGGGGCGCAAAGATCCGACGCCTCCTTATAACACAGGGAGgtcagagggagagggaggtgGAACTCAAAGAACTCCAACACCTCCAggaactccatttcccatcatgcaccaTGGCAGGAAGTTCTCAGATTCTGGGAGGTGTCATGGTGGGACCTGAGAGAGGAGAACCCCACGTCTTCCTTCCTTCTGATTCAGCATGAGCTTCCTCAGCCCCGTcatcacactcttacactccaATATCCCAGCATGCAACAGTCCTGCGGAACAAGATGGCCGCCATCTACACACTCCGACATAATGAGTCATCTTCCTTTCCCGCTTCCGCAATACTGCAGCCTGATTTGTTGCTTATTTTTACGTTTGTGGTTCatgtattcatattttgttAGTGCTGAacattaagtgtgtgtttgagagagaaggagagagagagatcagtaaATGATTAGCGTCCAGTGATTAGCATTAGCCTTAGCATCCACCAGCACAAGGAGGCTCTATCTGCTAAACAGCGTCTTtgacagaaaacaacaaaataaaaaggatTTCGCAACGAAAGTTAGcatttttaacatcacaaaCCCAACAGCTagtgtttctaaaaaaaaatcgaacGTTTTTGTACTCGCTTCACATCATCATAACAATCCTCGATACCAAATAACGAGTATGAAGACTGGTGACTTTATATTGAGAACTAATTAATCCGGAGACCAGACACTTTTCCGTTTTTCATTTAGTTACCACGTAGTAGAATTTGATTCGGAGAGAAAAACTGGATAAACAGGTGATACATTCggtagttttttaaaataattttttacaatCGATCTTTCACCAGCTAGCTGAGTTTTATTAACTTCTAAATTACGTTGTAGCTTATAACGgttttttcatttacaaaaaaggTTCATTGAGAGCAAATATTTCCACATTTGCAACAAAATATCa

Function

GO: NA

KEGG:

id description
K22413 FGF11_12_13, FHF3_1_2; fibroblast growth factor 11/12/13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309950 lncRNA upstream 26724 1333782 ~ 1333986 (+) True G261585
TU309909 lncRNA upstream 96570 1263307 ~ 1264140 (+) True G261544
TU309899 lncRNA upstream 112029 1241824 ~ 1248681 (+) True G261534
TU309901 lncRNA upstream 114099 1245800 ~ 1246611 (+) True G261536
TU309871 lncRNA upstream 146214 1203000 ~ 1214496 (+) True G261510
TU309975 lncRNA downstream 40750 1428150 ~ 1487270 (+) False LOC113524197
TU309973 lncRNA downstream 64699 1452099 ~ 1507489 (+) False LOC113524197
TU309969 lncRNA downstream 78168 1465568 ~ 1471657 (+) False LOC113524197
TU309972 lncRNA downstream 78168 1465568 ~ 1470922 (+) True LOC113524197
XR_003402517.2 lncRNA downstream 83221 1470621 ~ 1510087 (+) False LOC113524197
XM_026910332.2 mRNA upstream 232458 1119530 ~ 1128252 (+) True pcolcea
XM_026910335.2 mRNA upstream 248728 1101801 ~ 1111982 (+) False vamp2
XM_026910334.2 mRNA upstream 266377 1092079 ~ 1094333 (+) True and3
XM_034312866.1 mRNA upstream 494846 796839 ~ 865864 (+) True uvrag
XM_034312867.1 mRNA upstream 566617 781523 ~ 794093 (+) True dgat2
XM_026910307.2 mRNA downstream 14149 1401549 ~ 1408834 (+) True cldn7b
XM_026910308.2 mRNA downstream 24586 1411986 ~ 1418862 (+) False ponzr2
XM_034312304.1 mRNA downstream 27104 1414504 ~ 1419489 (+) True ponzr2
XM_034312305.1 mRNA downstream 27104 1414504 ~ 1419489 (+) False ponzr2
XM_026910309.2 mRNA downstream 27104 1414504 ~ 1418862 (+) False ponzr2
TU309863 other upstream 123578 1205991 ~ 1237132 (+) True G261503
TU309774 other upstream 248432 1101789 ~ 1112278 (+) True vamp2
trnal-aag_10 other upstream 261257 1099372 ~ 1099453 (+) True trnal-aag_10
trnal-uag_7 other upstream 265778 1094851 ~ 1094932 (+) True trnal-uag_7
TU309447 other upstream 632985 725827 ~ 727725 (+) True G261178
XR_004579765.1 other downstream 27104 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other downstream 27104 1414504 ~ 1419435 (+) False ponzr2
XR_004579857.1 other downstream 956261 2343661 ~ 2347385 (+) True LOC117599403
TU311007 other downstream 1408148 2795548 ~ 2817258 (+) False pcp4a
TU312620 other downstream 3690481 5077881 ~ 5080617 (+) False triap1

Expression Profile