RNA id: XM_034312549.1


Basic Information

Item Value
RNA id XM_034312549.1
length 6731
RNA type mRNA
GC content 0.45
exon number 20
gene id cux1a
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 576083 ~ 612550 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cactctctgtctctctctcacacacacacacacacacacacacgggctcATGATGGAGGTGAATTTGGAGCTGTTGTTAGAAACCTCTTAAAGACGTCACTGTTTAAACTaAAGACCTGGACGTCGCCGCCAGCACTCTCGCCAGCACACAGCATGAGAACGAACAAACACGAAAAAAACTCAACGACCAGAGCGACGAGCTCAAGAAACACACAccagaggattTACACGAACACATCACTCCACTGTTAAAGGGCTTCCAGTCTGAGATCGACGCTCTGTGTGAAAGGAGTAAAGAGTCAGAAGCTGCTTTCCTCAGCGTGTATAAGAGATTAATCGATGTCCCAGACCCGGTGTCTGCGTTAGAGGCGGTGCAACAGCTGCAGATTGCGGTTATTAAGATGCGCGACGTGGAGGCGGAGAATcagaagctgagagagagactgcaggAGTACGACAGAGAGGTcgcagaggtcaaaggtcatgaagaaatgattaaaacttTGAGGGAGAAATTGGAGTCTTACGAACATTTAATTCAGTGCGGAACGAAAGAcgaggatgaagaagaagaacaacgcAACGCTAACTGTGCAGGAAAAGAAAGAACCCATGAGGACGAAGCGATGATGGTGGATGTAGAAACAGCCAATCAGgctCTGGAGGCGGAGCTTGTGGTGAAGCAGAGAGAGGTGGAACGTCTGATGGAGGACGTACAGAAACTCCAGAGCAGCCTGACTGACCTCACCAACtccacagccaatcagatcagagaattacagcagcagctcgaCTCCaagcacacactgctgcagGAGCTTGAGGAGAAGCTGGAGGCTCAGGCGGACTATGAGGAGATAAAAAGGGAACTGAACATCCTGAGATCCATGGAGCTCGGTTCCTCAGAGCGTCCTGCAGAACAGGCTTCCCCGAGACGGCAGGACGCATCGCTTTCCAGGCAGGAGGACAGCGGCCAGGACCGAGACAGCGTCCAAAAACAACCGATTAACAGCAGCTTCACCGGTTCTGCGGAGAGTCGTCTTCCTGCCTCACCCTCCACCACACCTCCTCGATCCGGCCACGCCCACTCACAGACTCCACCCCTTTCTCAAATCCTCGTGAAGAGCAAAGCTCCACCTGAGTCGGCCCGCTCTTTTTCTTCCGATTTGTTTAGGCAGCGCTTCAGTGCTGCTTTTCCTCCACTCTCTGGCAAATCCTCAGCTAACTCGTTTCTCCAGCGGACGTTTGGGCAGAACCTGTACAGCTCAGACCTGCACACGGAGGAGGAAGTGGACACGGCTGAGATCGCGCGGCAGGTGAAGGAGCAGCTGATGAAGCACAACATCGGGCAGCGTGTGTTCGGACACTACGTGCTCGGGTTATCTCAGGGGTCCGTCAGCGAGATCCTCGCTCGCCCCAAACCCTGGAACAAACTCACCGTCCGCGGGAAAGAACCATTCCACAAGATGAGGCACTTCCTGTCTGACGAGCAGAACATCCTGACGCTGAGGAGCATCCAGGGACGACAGAGAGGTAATATCACCAGTAGAGTCCGTGTTCCTGAAAGCAGCTCTGATGAATCCCATAAGTCCGTTCTGGATCAGACTAAAAGGGACCTGCAGGGACACAAAATTGAAGGTGTCCACTCGTCTTTATCAGTTTCCTCAGATGACAACCTTCCCTCCGTCCTGAACGTCCAGCAGGTGGAGTCCGGTTCCAcaatgacctctgacctttccaGTTTGGGCTCCAGATTACTCGGTTCCTCCATTTCTGTGCTGCCTTACTCACCTCTGGAGCTTAACTCTGCGAAAaacacctcctcctctcctgtgATGGACTCCTGGAGAGAGCAGTGGTGGAGCGCGATACACTGCGAACAGcgcaaagacacacacactcaggaagaCACAGAGCTGGGCAGCATGGTGTCTGAGATTCCCGTTTCCTCGCAGGATTACTGGAAGGACCAATCGAGCACAAGTTCAGAACAAAATCTGCAGATGTCCAACACGAACGAGACGCCTCACAGCAGCCCGTTACtgccttcctcttcttcttcctcttcttcctcgtCGCTGCAAACAAAGCAAGCGAAAGCCACGATGACGCCGCTAACGTCCGAGCAGTACGAAAGATTCATGTACCAGGAAGTGGATACGGTGGAGCTCACGCAGCAGGTCAAAGAGAAACTCGCCAAGAACGGCGTCTGCCAAAGAGTGTTCGGGGAAAAGGTTCTGGGCCTCTCTCAGGGCAGTGTGAGTGACATGCTCTCTCGGCCGAAGCAGTGGAGTAAACTGACTCAGAAAGGCAGAGAGCCGTTTATACGCATGCAGCTGTGGATTGAAGGAGAACTGCAGGACCTCACGagggCAGAGACTTCGGCGAGTCTTAGCCCCGCCCCCGAGTCTCCTGAAAGCTCCTCTGAGGAGCTCGTTAAGCTCGTTAGGGACCAGCATGAAGAGGCGGAGCCTGAGTCACATGACACCGCAGCCGGGATGCAGGAAGCGGTGGTCACGCCGCTGGAACTCGACACCTACTCCATCAGCAAGAGGGTCAGAGAGGTGCTGAGCGATAATAACCTCGgTCAGCGTCTGTTCGGCGAGGCTGTTCTGGGTCTGACTCAGGGCTCCGTGTCTGATCTTTTGGCTCGGCCCAAACCGTGGCACAGACTGAGTGTGAAAGGCCGCGAGCCGTATGTGCGAATGCAGCGATGGCTGAACGACAAGAACAACATCCACAAACTGAGAGAAATCAAACACACTGAGAAAAAAGTGTATCTGAAGCGGCGTGTGAGCTCGGTGTGTGAGGACACTGTGCTGgacagcggtgtgtgtgtgggagagttTGGACAGGAGTGTGTTCCTCAGCTGAAGAAGTCTCGAGTCGTCCTCAGTGCGCAGGAGAAAGAGGCTCTGAGGAAAGCGTACGAGGAGAAACCGTATCCTTCACCAGGAGCCATCGAGGAACTCGCGCAGCAGCTCAGACTCAAAGCCAGCACCGTCACCAACTGGTTCCACAACTACAGGTCTCGTATTCGGCGTGGAGTCTTCATGGATGCGGCTGCAGTGAAATCAGATGGCGTCTCCGAGGGACAGACGAGTGGAACGCAGGAGTGCGCTGAGCTCTCGGACTCCACGTTTAACTTCCCAGAATCCTCAGCTGCGCCCGGAATCCTGAGAGACAGCAGCCTGCGCAGGCGGAAAGCCGCCAACCTGAACAGCATCATCCACCGCCTGGAGAAAGCGGCGAATCGGGACGAGGCCCACGAGGGCGAGGCGTGTGAGAGTCAGGACACGAGTGCAGAGTGTGTGAACGATTCCGCATCAGTCAGTGTGGATAACTAACGGGAGGCGGAGTCTCAGACAGAACACTGTCAATCAAGCAGCACATTAGCATGTTAGGCCACGCCCATCAGGGGGAGCAGTCTCAGATCAGTGCGATCAGCTGTTATATGAGtgttttatctcatttatatcTTATTTAAATTCTGCTGGATGCTTAATAGACACTGTTCTGGAATATTTTCCACGATTTTCCGATAACAAGCGTCAGCACTGTGTTCAGATCACCTGCGTTAACACTTACATACATTAGAAATATAAGATTAATGAACTGATaacagatgaaaataaaaaccagcTCCAGCAGTGTGCGCTCAGTGGACGTGGCAGgaggagaaaacaaaaagagatgattttgttattattttatgaattattattaatattacagggCACTTAACGCTCCGCTACGGCCCAAAGGTGCAAAACATAAACCCCAAAACTATAAAAACCCTTCAGCAATAAAGGCAGCAACTGTTACAGCtactacaatttttttattttatcaaccgagagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggacagagaATAATAAGAGGCCTCAGACTTAAAAAGTAGCACTTGAGGAAGCAGAAGCTCTCTGCTGTCAGCTCTATGCAGCTCTGCTTTGGATTTTTAAAGCCAGAAAGTTAAACTTCTTTgtctaaaaatcttttttacatgtttttattttagaatttttagcCCAGTGCCCTACTCCCTAATCTCTCCAAACACCCCACTGCATCATGGGTATTCACACACCTTATTCTCTATATAAGTcccataaacaccatcatcagccctcagtgggcgtgtcccaaatcaTCTCCACTACAGAGAAAGAagtttttttagaaataattttacaatattttaaaaagaactttTAGTAAGGAGAATAGTTTAGAACCAGGTGCCTTCGGTGGATTtgtgaaatgaaacacagccGTGAAACAGCACTGGAACCCTCAGGTCCTTCGCATTAACGTTCACTTCAGATACAAACCGCACTTTATGACCTGTTTAGTCTTTGTGCGATTTAGTAGCTACTTCAGACaagcagatgaaaaaaaaaacaagttctaGTTCACTGTTCAttattgtttctctttcttaaaCAATCGCGGTTGTGTGAATgctccagagaaaaaaaaatggaaataaactcCTGGCTTTTGTAAGCTCTAACACTGCACACGTACACGTACACGTACACGCTTGCTGAACATCTAACACGCTAACCGGCTCCATGAAACAGCCCTTAATATGGCGTCTGAAGGGGACATGAAGGGGACATGAAGGGGACATGAAGGGGACATGAAGGGGACGAGTGAATAAGAGCGATTcatttttcagttcattttattcgtgtgtgtttgtgtgcttgtgGCGAGTCTAACGTTGTCCTTCTCctctttttatctttaataataatcagaataataGCAGCAGACTTTTTATTAGTTGACGTAGTGGTAGTAATTTATACaggtattttataaatattaaagtcttatggaattgttttttatttatgtttatatatatatatatatatatttgaaggGACGATAAACGATCAGCTTCCGTGCTGTCAGATGAACAAACTGCCGGCAGTTCATCAGTAGAACATTATAGAACATACTTTTAATACGTGATAATTAATTTTACACCTTTATTGTTCTGTTAATGAGTTTAATGAACGTGTTACTCTGTGCACTAATCATACAGGCATTATAATGCATCATAACGCATTTAAATTATGACTCGTAAAGCATTTAAACTTTCTCATTTCTGTAAAAAATGATGTGATCATTTCGCAGTGAGACCTACAGCAGGAGTTCCCAAACTTTTTTATCCAAACGACCCCaaatctgtctctctgaagACTTTACGCCGCCGTCGTGATGGTCGTCATGAGCTTCGTCTCCAGTCTAAAACTCCGACCTCAcgttcaaaagtatttactacaaatctagaaaatccagaaggctggtGCACAGAGCAGAGCTTTCatgagaggattttaaaattcaaacactaagaGTAAGGAAAcctggttagtgttagtgctcagTAACGCTCTAGAACAGTGCGTAAGTGTgagatttgtctgtttttattgctgAGCTACACTAATGCAGCGAGTCAGGAGAGTGAAAACGACAAAAATAACACgtatacatgcacacaaaatccatcttcAATCTTTCTGATatcaatttataaaataaaggaatgaaACTGTGAGTGTAAATGAAGCGACGCTCAGTTTGGGATCTCCTGCGCTACACACTGCGCTATCACACGTCACACACCACGTCACCCTTCGGCTGAAATTCTGTTCTGATTACACATTTAACACTATATTCttatcatttaaacaaaacGTCTCTTACAGATGcagtttattttagtttcatctttatttcatcagttttaTCTAACAGGAAGTTCTGCACAGTAAATGAAATTCTCTCATTCGTCCCAGAAGTAGGAGTAAAATTACTGAAACGCTCTGCAGGTTTATCCCTCAGCATCAGGAATACatttcatcacttcctgtctcagGTTTTGATGTTTAAACCTTTATTTTAGTCAACAGATTAATTACAATAAGCAGGACTGGATTCATGTCTAATCGTTAATCACACCTCGCTGTATGTCAGTCTGCTAACGCTGTACGTTTAACAGCCAcgttattaatttattacactTCTTTAACTTACTGtctgtttttcctcattttgaatttttctaattttttttttctcccttttcattcaaattaaagtgagttattgtgttttatttgtgtattttacttGAGTCATTACTGTAAAGCTCTAATTAAAAATAaggcagatttttatttaaaaataaataaatacagtgatTAGGGGTCTGTTAGGGAGcttatttacatataatttacatataatttacatataatttacatatcaTGTATCAGGATGTGTGCTGATTTATAAACGATATTCCAGGCAGCCGTCGGATTCAAATCTCAGGATAAATCCCCaatataaactttattaatgcattttctggtgtgttttatattctttatttattattattttttattttaaagcataaaatggagctgaagtgtaaataaataaataaataaaaccccaaCTCCATTCCATTTTTATATGtatctaattttatttgtattatctGTATTTACAGAAGTATTCAGTCTTCCAGTCTTAATCCAGTACGGAAAAATCAATCACTgtatcattattcatttttattagattcattttatttgtatcccAGTGTGATAACGgaagtaaatatattttgtattttcagtgtatcctctgcagtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309324 lncRNA upstream 6321 517324 ~ 570178 (+) False G261101
TU309345 lncRNA upstream 7316 515729 ~ 569183 (+) False bcl7ba
TU309344 lncRNA upstream 59345 515729 ~ 517154 (+) False bcl7ba
TU309311 lncRNA upstream 140211 379020 ~ 436288 (+) False ska2
TU309346 lncRNA upstream 152741 422871 ~ 423758 (+) True G261106
TU309405 lncRNA downstream 44855 657405 ~ 670966 (+) False LOC117599335
XR_004579793.1 lncRNA downstream 50462 663012 ~ 684364 (+) True LOC117599335
TU309434 lncRNA downstream 92993 705543 ~ 706282 (+) True G261173
TU309437 lncRNA downstream 98874 711424 ~ 713068 (+) True G261176
TU309468 lncRNA downstream 158708 771258 ~ 773261 (+) True G261190
XM_034312782.1 mRNA upstream 59289 507279 ~ 517210 (+) True bcl7ba
XM_034312901.1 mRNA upstream 69400 501222 ~ 507099 (+) True tbl2
XM_034312781.1 mRNA upstream 76313 482388 ~ 500186 (+) True prdm15
XM_034312541.1 mRNA upstream 99908 460262 ~ 476591 (+) True LOC113523717
XM_034312540.1 mRNA upstream 140201 428149 ~ 436298 (+) True ska2
XM_026910326.2 mRNA downstream 3280 615830 ~ 621347 (+) True kctd7
XM_034312453.1 mRNA downstream 10836 623386 ~ 636006 (+) True rabgef1
XM_034312455.1 mRNA downstream 10836 623386 ~ 633969 (+) False rabgef1
XM_034312454.1 mRNA downstream 12336 624886 ~ 633972 (+) False rabgef1
XM_034312456.1 mRNA downstream 17461 630011 ~ 633973 (+) False rabgef1
TU309320 other upstream 63726 507497 ~ 512773 (+) False bcl7ba
TU309389 other upstream 90299 482435 ~ 486200 (+) False prdm15
TU309343 other upstream 95788 444767 ~ 480711 (+) True G261104
XR_004579859.1 other upstream 264513 311476 ~ 311986 (+) True LOC117599405
TU309275 other upstream 309739 256626 ~ 266760 (+) True fgf13b
TU309447 other downstream 113277 725827 ~ 727725 (+) True G261178
trnal-uag_7 other downstream 482301 1094851 ~ 1094932 (+) True trnal-uag_7
trnal-aag_10 other downstream 486822 1099372 ~ 1099453 (+) True trnal-aag_10
TU309774 other downstream 489239 1101789 ~ 1112278 (+) True vamp2
TU309863 other downstream 593441 1205991 ~ 1237132 (+) True G261503

Expression Profile